Gene Pput_1216 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPput_1216 
Symbol 
ID5195512 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida F1 
KingdomBacteria 
Replicon accessionNC_009512 
Strand
Start bp1379369 
End bp1380046 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content62% 
IMG OID640585679 
Producttwo component transcriptional regulator 
Protein accessionYP_001266561 
Protein GI148546459 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACTGC TGGTGGTCGA GGACGAAGCC CTGCTTCGCC ATCACCTCTA CACCCGCCTG 
GGCGAAAGCG GCCATGTGGT CGAGGCGGTC GCTGATGCCG AAGAGGCGCT GTACCAGGCC
GAGCAGTACC ATTTCGACCT TGCCATCATC GATCTGGGCC TGCCCGGTAT CAGCGGCCTG
GAGCTGATCA CGCGTCTGCG CAGCCAGGAC AAGACCTTCC CCATTCTCAT CCTCACAGCC
CGTGGCAACT GGCAAGACAA GGTCGAGGGC CTGGCCGCCG GTGCCGACGA CTATCTGGTC
AAGCCGTTCC AGTTCGAGGA GCTTGAAGCA CGGCTCAATG CCCTGTTACG CCGCTCCAGT
GGTTTCATCC AGTCGACCAT CACCGCTGGC CCCTTGGTAC TTGACCTCAA CCGCAAGCAG
GCCACCCTCG ACGAACACGC CTTGGCCCTG ACTGCCTACG AATACCGCAT CCTCGAATAC
CTCATGCGCC ATCACCAGCA GGTGGTGGCC AAGGATCGCC TGATGGAACA GTTGTACCCA
GGTGACGAAG AGCGCGACCC CAATGTCATC GAAGTGCTGG TTGGCCGCCT GCGCCGCAAG
CTTGAAGGCG AGCGCGGCTT CAAACCCATC GACACGGTGC GCGGCCTGGG CTACCTGTTC
ACCGAGCGCT GCCGATGA
 
Protein sequence
MKLLVVEDEA LLRHHLYTRL GESGHVVEAV ADAEEALYQA EQYHFDLAII DLGLPGISGL 
ELITRLRSQD KTFPILILTA RGNWQDKVEG LAAGADDYLV KPFQFEELEA RLNALLRRSS
GFIQSTITAG PLVLDLNRKQ ATLDEHALAL TAYEYRILEY LMRHHQQVVA KDRLMEQLYP
GDEERDPNVI EVLVGRLRRK LEGERGFKPI DTVRGLGYLF TERCR