More than 300 homologs were found in PanDaTox collection
for query gene Smed_4594 on replicon NC_009620
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009620  Smed_4594  binding-protein-dependent transport systems inner membrane component  100 
 
 
332 aa  665    Sinorhizobium medicae WSM419  Bacteria  normal  0.949619  normal 
 
 
-
 
NC_011366  Rleg2_5972  binding-protein-dependent transport systems inner membrane component  80.42 
 
 
332 aa  568  1e-161  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.66552  normal  0.21412 
 
 
-
 
NC_012858  Rleg_7125  binding-protein-dependent transport systems inner membrane component  81.02 
 
 
332 aa  569  1e-161  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.483809  normal  0.155681 
 
 
-
 
NC_011989  Avi_3929  ABC transporter membrane spanning protein (oligopeptide)  76.81 
 
 
332 aa  541  1e-153  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_013521  Sked_14290  ABC-type dipeptide/oligopeptide/nickel transport system, permease component  52.29 
 
 
329 aa  362  4e-99  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_011661  Dtur_1707  binding-protein-dependent transport systems inner membrane component  53.52 
 
 
327 aa  360  2e-98  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000000370081  n/a   
 
 
-
 
NC_010511  M446_6477  binding-protein-dependent transport systems inner membrane component  54.14 
 
 
341 aa  358  6e-98  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_011894  Mnod_7229  binding-protein-dependent transport systems inner membrane component  53.25 
 
 
341 aa  356  2.9999999999999997e-97  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.0256159  n/a   
 
 
-
 
NC_011988  Avi_5699  ABC transporter membrane spanning protein (oligopeptide)  50.61 
 
 
327 aa  349  4e-95  Agrobacterium vitis S4  Bacteria  normal  0.0252968  n/a   
 
 
-
 
NC_010483  TRQ2_0509  binding-protein-dependent transport systems inner membrane component  56.27 
 
 
327 aa  343  2.9999999999999997e-93  Thermotoga sp. RQ2  Bacteria  normal  0.0910485  n/a   
 
 
-
 
NC_009486  Tpet_1683  binding-protein-dependent transport systems inner membrane component  56.27 
 
 
327 aa  343  2.9999999999999997e-93  Thermotoga petrophila RKU-1  Bacteria  hitchhiker  0.0000273599  n/a   
 
 
-
 
NC_010505  Mrad2831_2831  binding-protein-dependent transport systems inner membrane component  50.59 
 
 
338 aa  342  7e-93  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.0285608  normal  0.325568 
 
 
-
 
NC_014211  Ndas_5259  binding-protein-dependent transport systems inner membrane component  52.76 
 
 
333 aa  340  2e-92  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_008243  Meso_4486  binding-protein-dependent transport systems inner membrane component  49.09 
 
 
330 aa  338  5e-92  Chelativorans sp. BNC1  Bacteria  normal  0.394023  n/a   
 
 
-
 
NC_012850  Rleg_3375  binding-protein-dependent transport systems inner membrane component  52.74 
 
 
328 aa  327  2.0000000000000001e-88  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  decreased coverage  0.00209232  normal  0.0480066 
 
 
-
 
NC_009621  Smed_5557  binding-protein-dependent transport systems inner membrane component  50.3 
 
 
328 aa  326  3e-88  Sinorhizobium medicae WSM419  Bacteria  normal  0.621423  normal  0.0366433 
 
 
-
 
NC_010483  TRQ2_0886  binding-protein-dependent transport systems inner membrane component  50 
 
 
328 aa  324  1e-87  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0864  binding-protein-dependent transport systems inner membrane component  50 
 
 
328 aa  324  1e-87  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_2453  binding-protein-dependent transport systems inner membrane component  49.7 
 
 
329 aa  323  3e-87  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.925084  normal  0.312586 
 
 
-
 
NC_011368  Rleg2_5448  binding-protein-dependent transport systems inner membrane component  48.78 
 
 
328 aa  321  8e-87  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  decreased coverage  0.00290712 
 
 
-
 
NC_012848  Rleg_5179  binding-protein-dependent transport systems inner membrane component  48.78 
 
 
328 aa  318  7e-86  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.687314  normal  0.260687 
 
 
-
 
NC_008043  TM1040_3684  binding-protein-dependent transport systems inner membrane component  47.65 
 
 
342 aa  317  2e-85  Ruegeria sp. TM1040  Bacteria  normal  normal  0.400561 
 
 
-
 
NC_012669  Bcav_0596  binding-protein-dependent transport systems inner membrane component  48.64 
 
 
330 aa  312  4.999999999999999e-84  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_011988  Avi_5516  ABC transporter membrane spanning protein (oligopeptide)  48.16 
 
 
328 aa  309  5e-83  Agrobacterium vitis S4  Bacteria  normal  0.472347  n/a   
 
 
-
 
NC_013525  Tter_1804  binding-protein-dependent transport systems inner membrane component  45.57 
 
 
327 aa  291  1e-77  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013946  Mrub_1662  binding-protein-dependent transport systems inner membrane component  43.52 
 
 
322 aa  270  2.9999999999999997e-71  Meiothermus ruber DSM 1279  Bacteria  normal  0.161485  normal  0.148489 
 
 
-
 
NC_009523  RoseRS_3049  binding-protein-dependent transport systems inner membrane component  41.46 
 
 
328 aa  269  5.9999999999999995e-71  Roseiflexus sp. RS-1  Bacteria  normal  0.111848  normal  0.36544 
 
 
-
 
NC_009523  RoseRS_2809  binding-protein-dependent transport systems inner membrane component  42.81 
 
 
327 aa  266  5e-70  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_009767  Rcas_2111  binding-protein-dependent transport systems inner membrane component  42.68 
 
 
328 aa  265  5.999999999999999e-70  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.2949  normal 
 
 
-
 
NC_009767  Rcas_2423  binding-protein-dependent transport systems inner membrane component  41.9 
 
 
327 aa  261  1e-68  Roseiflexus castenholzii DSM 13941  Bacteria  normal  0.772391  normal  0.978149 
 
 
-
 
NC_014212  Mesil_2593  binding-protein-dependent transport systems inner membrane component  42.2 
 
 
322 aa  250  2e-65  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_012858  Rleg_6876  binding-protein-dependent transport systems inner membrane component  39.34 
 
 
335 aa  241  9e-63  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.0537311  normal 
 
 
-
 
NC_008010  Dgeo_2511  binding-protein-dependent transport systems inner membrane component  44.48 
 
 
323 aa  237  2e-61  Deinococcus geothermalis DSM 11300  Bacteria  normal  n/a   
 
 
-
 
NC_009620  Smed_4141  binding-protein-dependent transport systems inner membrane component  38.62 
 
 
337 aa  236  3e-61  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.633745 
 
 
-
 
NC_011366  Rleg2_5906  binding-protein-dependent transport systems inner membrane component  39.39 
 
 
335 aa  236  4e-61  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.188987  normal  0.479782 
 
 
-
 
NC_011988  Avi_5118  ABC transporter membrane spanning protein (oligopeptide )  38.02 
 
 
337 aa  231  2e-59  Agrobacterium vitis S4  Bacteria  normal  0.296521  n/a   
 
 
-
 
NC_010003  Pmob_1327  binding-protein-dependent transport systems inner membrane component  37.39 
 
 
326 aa  213  3.9999999999999995e-54  Petrotoga mobilis SJ95  Bacteria  hitchhiker  0.00111488  n/a   
 
 
-
 
NC_009616  Tmel_1387  binding-protein-dependent transport systems inner membrane component  37.31 
 
 
321 aa  193  3e-48  Thermosipho melanesiensis BI429  Bacteria  hitchhiker  0.000859188  n/a   
 
 
-
 
NC_009718  Fnod_1563  binding-protein-dependent transport systems inner membrane component  34.04 
 
 
321 aa  192  7e-48  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  0.0231928  n/a   
 
 
-
 
NC_002939  GSU1434  peptide ABC transporter, permease protein  34.73 
 
 
326 aa  188  1e-46  Geobacter sulfurreducens PCA  Bacteria  normal  0.393954  n/a   
 
 
-
 
NC_010483  TRQ2_0405  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
321 aa  184  1.0000000000000001e-45  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_009486  Tpet_0389  binding-protein-dependent transport systems inner membrane component  35.44 
 
 
321 aa  184  1.0000000000000001e-45  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_0434  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
358 aa  184  2.0000000000000003e-45  Trichodesmium erythraeum IMS101  Bacteria  normal  normal  0.0891876 
 
 
-
 
NC_014212  Mesil_1368  binding-protein-dependent transport systems inner membrane component  34.12 
 
 
332 aa  181  1e-44  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.00733957  hitchhiker  0.00049009 
 
 
-
 
NC_007517  Gmet_1235  binding-protein dependent transport system inner membrane protein  33.53 
 
 
333 aa  180  2.9999999999999997e-44  Geobacter metallireducens GS-15  Bacteria  normal  0.391976  normal  0.26803 
 
 
-
 
NC_006274  BCZK0210  oligopeptide ABC transporter, permease  32.32 
 
 
318 aa  179  5.999999999999999e-44  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0232  oligopeptide ABC transporter permease protein  32.32 
 
 
318 aa  179  5.999999999999999e-44  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_010001  Cphy_0806  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
334 aa  179  5.999999999999999e-44  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0267  oligopeptide ABC transporter, permease protein  32.62 
 
 
318 aa  179  5.999999999999999e-44  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B5079  oligopeptide ABC transporter, permease protein  32.01 
 
 
318 aa  179  5.999999999999999e-44  Bacillus cereus G9842  Bacteria  normal  0.823719  normal 
 
 
-
 
NC_003909  BCE_0249  oligopeptide ABC transporter, permease protein  32.32 
 
 
318 aa  179  7e-44  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_010718  Nther_0478  binding-protein-dependent transport systems inner membrane component  32.92 
 
 
321 aa  177  3e-43  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0206  oligopeptide ABC transporter, permease  31.71 
 
 
318 aa  176  4e-43  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_009523  RoseRS_4598  binding-protein-dependent transport systems inner membrane component  33.54 
 
 
319 aa  176  6e-43  Roseiflexus sp. RS-1  Bacteria  normal  0.930375  normal 
 
 
-
 
NC_008262  CPR_2257  oligopeptide ABC transporter, permease component  31.33 
 
 
321 aa  176  6e-43  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0209  binding-protein-dependent transport systems inner membrane component  31.71 
 
 
318 aa  175  8e-43  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2730  binding-protein-dependent transport systems inner membrane component  34.83 
 
 
331 aa  174  9.999999999999999e-43  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_2797  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
319 aa  175  9.999999999999999e-43  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS0219  oligopeptide ABC transporter permease  32.18 
 
 
307 aa  174  1.9999999999999998e-42  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0242  oligopeptide ABC transporter, permease protein  32.18 
 
 
307 aa  174  1.9999999999999998e-42  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_009632  SaurJH1_1012  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
320 aa  174  2.9999999999999996e-42  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.0445446  n/a   
 
 
-
 
NC_011725  BCB4264_A0246  oligopeptide ABC transporter, permease protein  31.86 
 
 
307 aa  174  2.9999999999999996e-42  Bacillus cereus B4264  Bacteria  normal  0.0542782  n/a   
 
 
-
 
NC_008261  CPF_2554  oligopeptide/dipeptide ABC transporter, permease protein  31.02 
 
 
321 aa  173  2.9999999999999996e-42  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_0993  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
320 aa  174  2.9999999999999996e-42  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0220  binding-protein-dependent transport systems inner membrane component  31.4 
 
 
318 aa  171  1e-41  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010730  SYO3AOP1_1446  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
328 aa  171  2e-41  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  hitchhiker  0.000323084  n/a   
 
 
-
 
NC_008609  Ppro_2014  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
325 aa  170  4e-41  Pelobacter propionicus DSM 2379  Bacteria  normal  0.169122  n/a   
 
 
-
 
NC_011831  Cagg_1411  binding-protein-dependent transport systems inner membrane component  33.23 
 
 
319 aa  168  2e-40  Chloroflexus aggregans DSM 9485  Bacteria  normal  normal 
 
 
-
 
NC_011884  Cyan7425_3483  binding-protein-dependent transport systems inner membrane component  35.19 
 
 
351 aa  167  2e-40  Cyanothece sp. PCC 7425  Bacteria  normal  normal  0.61865 
 
 
-
 
NC_007802  Jann_0779  binding-protein-dependent transport systems inner membrane component  31.9 
 
 
313 aa  167  2e-40  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_2856  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
322 aa  167  2.9999999999999998e-40  Serratia proteamaculans 568  Bacteria  normal  normal  0.205475 
 
 
-
 
NC_009483  Gura_2050  binding-protein-dependent transport systems inner membrane component  31.63 
 
 
325 aa  167  2.9999999999999998e-40  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008043  TM1040_3436  binding-protein-dependent transport systems inner membrane component  33.03 
 
 
315 aa  166  4e-40  Ruegeria sp. TM1040  Bacteria  normal  0.24032  normal  0.535319 
 
 
-
 
NC_008530  LGAS_0776  ABC-type dipeptide/oligopeptide/nickel transport system, permease component  29.91 
 
 
320 aa  166  4e-40  Lactobacillus gasseri ATCC 33323  Bacteria  decreased coverage  0.00000000429836  hitchhiker  0.000000000000473305 
 
 
-
 
NC_014248  Aazo_2322  binding-protein-dependent transporter inner membrane protein  33.03 
 
 
348 aa  166  4e-40  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2033  binding-protein-dependent transport systems inner membrane component  33.13 
 
 
324 aa  166  5.9999999999999996e-40  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0384  binding-protein-dependent transport systems inner membrane component  32.62 
 
 
319 aa  166  5.9999999999999996e-40  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.512992 
 
 
-
 
NC_008709  Ping_3159  ABC transporter binding protein inner membrane protein  29.61 
 
 
393 aa  165  1.0000000000000001e-39  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_011726  PCC8801_2266  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
320 aa  163  3e-39  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013922  Nmag_0581  binding-protein-dependent transport systems inner membrane component  33.74 
 
 
318 aa  164  3e-39  Natrialba magadii ATCC 43099  Archaea  normal  0.448412  n/a   
 
 
-
 
NC_013161  Cyan8802_2317  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
320 aa  163  3e-39  Cyanothece sp. PCC 8802  Bacteria  normal  normal  0.766968 
 
 
-
 
NC_011729  PCC7424_2612  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
353 aa  163  4.0000000000000004e-39  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_010001  Cphy_0813  binding-protein-dependent transport systems inner membrane component  29.57 
 
 
328 aa  163  4.0000000000000004e-39  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.00108438  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0572  binding-protein-dependent transport systems inner membrane component  28.27 
 
 
322 aa  163  4.0000000000000004e-39  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_007413  Ava_2469  binding-protein dependent transport system inner membrane protein  33.63 
 
 
345 aa  163  5.0000000000000005e-39  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_005957  BT9727_0569  oligopeptide ABC transporter, permease  30.61 
 
 
321 aa  162  7e-39  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1869  ABC-type transport system protein  33.53 
 
 
324 aa  162  7e-39  Pelobacter carbinolicus DSM 2380  Bacteria  normal  n/a   
 
 
-
 
NC_011729  PCC7424_3115  binding-protein-dependent transport systems inner membrane component  32.33 
 
 
322 aa  160  3e-38  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_012918  GM21_1591  binding-protein-dependent transport systems inner membrane component  32.13 
 
 
326 aa  160  4e-38  Geobacter sp. M21  Bacteria  n/a    normal  0.75386 
 
 
-
 
NC_011898  Ccel_1767  binding-protein-dependent transport systems inner membrane component  33.53 
 
 
321 aa  159  6e-38  Clostridium cellulolyticum H10  Bacteria  normal  0.181911  n/a   
 
 
-
 
NC_011146  Gbem_2643  binding-protein-dependent transport systems inner membrane component  31.83 
 
 
326 aa  159  9e-38  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_2849  ABC transporter permease protein  30.46 
 
 
313 aa  158  1e-37  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.585703  normal  0.643564 
 
 
-
 
NC_013515  Smon_0942  binding-protein-dependent transport systems inner membrane component  28.31 
 
 
320 aa  157  2e-37  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009674  Bcer98_0553  binding-protein-dependent transport systems inner membrane component  28.96 
 
 
322 aa  157  3e-37  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_0692  binding-protein-dependent transport systems inner membrane component  32.43 
 
 
321 aa  157  3e-37  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_1413  binding-protein-dependent transport systems inner membrane component  32.15 
 
 
332 aa  154  2e-36  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.739242 
 
 
-
 
NC_008686  Pden_0802  binding-protein-dependent transport systems inner membrane component  31.8 
 
 
312 aa  153  2.9999999999999998e-36  Paracoccus denitrificans PD1222  Bacteria  normal  0.882657  normal  0.847152 
 
 
-
 
NC_009485  BBta_2054  peptide ABC transporter permease  32.15 
 
 
336 aa  153  4e-36  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0359637  normal  0.365039 
 
 
-
 
NC_012793  GWCH70_0757  binding-protein-dependent transport systems inner membrane component  27.36 
 
 
309 aa  153  4e-36  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_008009  Acid345_3533  ABC peptide transporter, inner membrane subunit  32.21 
 
 
305 aa  153  4e-36  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
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