| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_3436 |
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| Symbol | |
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| ID | 4075610 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008043 |
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| Strand | - |
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| Start bp | 460797 |
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| End bp | 461744 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638004945 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_611670 |
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| Protein GI | 99078412 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.24032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.535319 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCATT ATCTCGCCAA ACGACTGCTG TCGCTCGCTC TCAGTCTCAC CATTGCATCC
ATGGTGATTT TCGCCGTGAT CGAAGTCGCT CCGGGCGATC CGGCCTCCTT CATGCTGGGC
ACCGGCGCCC AAGAGGAAAC CGTCGCCGCC CTGCGCAGCG AGCTGGGCCT CGATCAAAGC
AAGGTGAGCC GCTATCTCGA CTGGGTTGGC GGCATGCTGA CCGGAGATTT CGGCACCTCT
TACACATATC GCACCCCGGT CGCCAAAATG GTTGCAGAGC GGCTTTGGGT CTCTCTGCCG
CTCGCGATCT ATGCGCTGAC GCTGTCCACA TTGATCGCGC TTCCGGCCGG GATCTATGCG
GCCTCGCGGC GGGGCAAAGC CGGGGACATG GCCGTGATGG GCGCGACCCA GCTTGGGGTC
GCGGTGCCGA ATTTCTGGTT TGCGATGCTC TTGGTGCTGG TCTTTGCAAT CAATCTGCGC
TGGTTTTCGG CGGGCGGATT TGTCGGCTGG GACAAGGGGC TATGGGCGGG ACTGCACGCG
CTGACCCTGC CGGCGATTGC GCTGGCGTTG CCGCAGGCGG CAATCCTTGC GCGGGTTATG
CGCTCGGCCC TTCTGGAAGT GCTGGGCGAG GACTTCATGC GCTCGGCTCG CGCCAAAGGT
CTGAGCCAGA AGCAGGCGAT CCGCCGTCAC GGGCTGCGCA ACGCGCTTAT TCCCGTGCTT
ACGATCATCG GCCTGCAGTT TTCATTCCTG CTTGCCGGTG CCATCATCAT CGAACAGGTC
TTTTATCTGC CGGGCCTTGG ACGGCTGGTG TTTCAGGCGA TTTCCGCGCG CGATCTCATT
GTGGTCGAAA GCGTCGTCAT GCTCTTGGTC TTTGCCGTGA TCCTGGTGAA CTTTCTTGTC
GATATGGCCT ATGCCGTGGT CGATCCTCGG CTCAGGAGAA CATCATGA
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| Protein sequence | MLHYLAKRLL SLALSLTIAS MVIFAVIEVA PGDPASFMLG TGAQEETVAA LRSELGLDQS
KVSRYLDWVG GMLTGDFGTS YTYRTPVAKM VAERLWVSLP LAIYALTLST LIALPAGIYA
ASRRGKAGDM AVMGATQLGV AVPNFWFAML LVLVFAINLR WFSAGGFVGW DKGLWAGLHA
LTLPAIALAL PQAAILARVM RSALLEVLGE DFMRSARAKG LSQKQAIRRH GLRNALIPVL
TIIGLQFSFL LAGAIIIEQV FYLPGLGRLV FQAISARDLI VVESVVMLLV FAVILVNFLV
DMAYAVVDPR LRRTS
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