| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rcas_2453 |
|---|
| Symbol | |
|---|
| ID | 5539934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus castenholzii DSM 13941 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009767 |
|---|
| Strand | - |
|---|
| Start bp | 3151635 |
|---|
| End bp | 3152624 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640894583 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001432551 |
|---|
| Protein GI | 156742422 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.925084 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.312586 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTCAGT ATATTGCGCG TCGCGTAGTG TTGATGATTC CAACCCTGTT TGTCATTTCG
CTGATCTCGT TCGCCATCAT TCAACTGCCT CCCGGCGACT TCTTAAGCTC CTACGTAGCG
CAACTGCGCA CTGAAGGCGA CGCAATCGAC GCTGCACAGT TAGCGGCGCT CGAAGAGCAA
TACGGGTTGA ACCAACCCAT ATACATCCAA TACTGGAAGT GGATCAGCGG CATTTTACTG
CGCGGCGATA TGGGACGGTC GTTCGAGTGG GGCAAGCCGG TAAGCGAGTT AATCTGGGAT
CGGATCGGGA TCACCATGCT GATCTCGCTC CTGACCATCC TCCTGAGTTG GGCGATTGCC
ATTCCGGCCG GCGTGTATGC CGCCACGCAC CGGTATTCCA TCCCCGATTA TCTGATGAGT
TTCATCAGTT TTCTGGGGTT GGGCACACCG AGTTTCATGG TTGCGCTCAT TGCGCTGTGG
GTCGGGCTGG CGTTCTTTGG GGTCAATATC AGCGGCTTGT TTTCCGATCA GTATCTCGAC
GCGCCATGGA GCGTCGGCAA AGTGCTGGAT ATGCTATCGC GCATCTGGCT GCCGGTGATC
GTCCTCGCTA TCGACAATAC AGCCAGTATC ATTCGCACGC TGCGCGCTAA TCTGCTGGAT
GAACTCAACA AGCCCTATGT CGAAACGGCG CGCGCGAAGG GGGTGCGCGA GACGGTGCTG
ATCTGGAAGT ATCCGGTGCG CGTGGCGCTC AACCCGTTCT TCAGCACCGT TGGCTGGACG
CTTGCGGCGC TCGTTTCCGG CGAAACGCTG GTGGCGGTCG TGCTGAGTTA TCAGACGAGT
GGACCGCTCC TGTTGCGCGC GTTGACCTCG CAGGACATGT ACCTTGCCGG GAGTTTCATT
CTGCTACTCA GTACGCTGAC GGTCATCGGC ACGCTGATTT CGGACATTCT GCTCGCATGG
GTTGATCCGC GCATCCGTCT GGAGGAGTAA
|
|---|
| Protein sequence | MLQYIARRVV LMIPTLFVIS LISFAIIQLP PGDFLSSYVA QLRTEGDAID AAQLAALEEQ
YGLNQPIYIQ YWKWISGILL RGDMGRSFEW GKPVSELIWD RIGITMLISL LTILLSWAIA
IPAGVYAATH RYSIPDYLMS FISFLGLGTP SFMVALIALW VGLAFFGVNI SGLFSDQYLD
APWSVGKVLD MLSRIWLPVI VLAIDNTASI IRTLRANLLD ELNKPYVETA RAKGVRETVL
IWKYPVRVAL NPFFSTVGWT LAALVSGETL VAVVLSYQTS GPLLLRALTS QDMYLAGSFI
LLLSTLTVIG TLISDILLAW VDPRIRLEE
|
|---|
| |