Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rcas_2423 |
Symbol | |
ID | 5539904 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus castenholzii DSM 13941 |
Kingdom | Bacteria |
Replicon accession | NC_009767 |
Strand | - |
Start bp | 3116417 |
End bp | 3117400 |
Gene Length | 984 bp |
Protein Length | 327 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 640894553 |
Product | binding-protein-dependent transport systems inner membrane component |
Protein accession | YP_001432521 |
Protein GI | 156742392 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.772391 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 0.978149 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAACT TCATTGCCCG ACGCCTGGTC AACATGTTCT TTTTGTTGAT AGTCGTTTCC TTTGTGGGAT TCTGGATCAT TCAGTTGCCG CCAGGATCGA TTCTTGATGT GCAGATTCAG CGTCTGCGGA TGCAGGGCGG AAACCTCCCC GAATCGATGA TCCAGGCTTT GCGTGATCGC TACGGCGTCG ATGATCCATT CTATGTTCAA TACTGGAAGT GGATTTCACG CTCGTTGCAG GGCGATTTTG GCACCTCATT CGAGACCGAT CAGAAAGTTG CCGAGCGTAT CTATAACCGT TTGGGCATTT CGTTTGGCTT GTCGTTGACG GCGCTCCTCT TCACCTGGCT GGTTGCGATT CCGATTGGCG TCTACTCGGC AACCCATCGT TACACCTGGC CAGATTATTT GATCACCTTT GTCCAGTTTT TAGGACTCTC CATCCCCGGA TTCCTGCTGG CGCTGATTTT GCTCATTACA GCGTCACGCC TGTGGGATCA ACCGATTGGC GGTCTCTTCT CGCCGCAGTA TGCCGACGCG CCCTGGAGCC TTGCCAAACT GTGGGACTTT ATTCGCCACG TCTGGATTGC GATCGTTGTC CTGGCAATTG GAGCGACTGC CGGTTTGACG CGCGTGATGC GCGCTAATCT GCTCGATGTG CTGAATATGC AGTACATCCA GACGGCGCGC GCGAAGGGAT TGAAAGAGTC GACCGTCATC TGGAAGCATG CCGTGCGCAA CGCTATCCAC CCGCTGGTCA TGTCGCTTGG GACGCTGCTG CCGGCGCTGG TGGTCGGTGA AACGCTGATT GCGATCATTT TGAGCCTGCC GACGATTGGT CCCCTTTACC TCGATGCGTT GCGTTCGCAG GATATGTACC TGGCCGGAAC GATCCTCGTC ATGCTGTCCG CGTTGCTGCT GGTTGGCAAC CTCATCGCCG ACCTGCTGCT CGCCTGGGTC GATCCGCGTG TGCGGCTCGA ATAA
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Protein sequence | MLNFIARRLV NMFFLLIVVS FVGFWIIQLP PGSILDVQIQ RLRMQGGNLP ESMIQALRDR YGVDDPFYVQ YWKWISRSLQ GDFGTSFETD QKVAERIYNR LGISFGLSLT ALLFTWLVAI PIGVYSATHR YTWPDYLITF VQFLGLSIPG FLLALILLIT ASRLWDQPIG GLFSPQYADA PWSLAKLWDF IRHVWIAIVV LAIGATAGLT RVMRANLLDV LNMQYIQTAR AKGLKESTVI WKHAVRNAIH PLVMSLGTLL PALVVGETLI AIILSLPTIG PLYLDALRSQ DMYLAGTILV MLSALLLVGN LIADLLLAWV DPRVRLE
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