More than 300 homologs were found in PanDaTox collection
for query gene RPC_1224 on replicon NC_007925
Organism: Rhodopseudomonas palustris BisB18



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007925  RPC_1224  short-chain dehydrogenase/reductase SDR  100 
 
 
261 aa  533  1e-150  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.000362575 
 
 
-
 
NC_012853  Rleg_5590  short-chain dehydrogenase/reductase SDR  67.43 
 
 
266 aa  370  1e-101  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.263195  hitchhiker  0.00574732 
 
 
-
 
NC_012853  Rleg_5904  short-chain dehydrogenase/reductase SDR  67.18 
 
 
265 aa  367  1e-100  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.708406  normal 
 
 
-
 
NC_008254  Meso_3682  short-chain dehydrogenase/reductase SDR  62.2 
 
 
261 aa  342  2e-93  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_3574  short-chain dehydrogenase/reductase SDR  60.16 
 
 
267 aa  298  6e-80  Acidovorax citrulli AAC00-1  Bacteria  normal  0.259441  normal  0.335877 
 
 
-
 
NC_009429  Rsph17025_3335  hypothetical protein  53.6 
 
 
249 aa  263  2e-69  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.2531  normal  0.255614 
 
 
-
 
NC_011884  Cyan7425_0445  short-chain dehydrogenase/reductase SDR  47.71 
 
 
267 aa  244  9.999999999999999e-64  Cyanothece sp. PCC 7425  Bacteria  normal  0.810235  normal  0.221701 
 
 
-
 
NC_013757  Gobs_3857  short-chain dehydrogenase/reductase SDR  46.77 
 
 
263 aa  220  1.9999999999999999e-56  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_0746  short-chain dehydrogenase/reductase SDR  45.04 
 
 
268 aa  197  2.0000000000000003e-49  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.219555 
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  42.15 
 
 
265 aa  186  3e-46  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_014151  Cfla_2980  short-chain dehydrogenase/reductase SDR  43.08 
 
 
271 aa  184  1.0000000000000001e-45  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1227  short-chain dehydrogenase/reductase SDR  39.92 
 
 
261 aa  175  6e-43  Methylobacterium populi BJ001  Bacteria  normal  0.198957  normal  0.373488 
 
 
-
 
NC_009077  Mjls_2901  short-chain dehydrogenase/reductase SDR  44.74 
 
 
231 aa  172  3.9999999999999995e-42  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_2871  short-chain dehydrogenase/reductase SDR  44.74 
 
 
231 aa  172  3.9999999999999995e-42  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_2915  short-chain dehydrogenase/reductase SDR  44.74 
 
 
231 aa  172  3.9999999999999995e-42  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  37.64 
 
 
298 aa  163  3e-39  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  36.64 
 
 
344 aa  154  1e-36  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_2064  oxidoreductase ( short-chain dehydrogenase)  36.4 
 
 
264 aa  149  4e-35  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.694867  normal  0.0846624 
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  33.99 
 
 
360 aa  143  3e-33  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  41.07 
 
 
259 aa  142  4e-33  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  34.65 
 
 
256 aa  141  8e-33  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  32.81 
 
 
257 aa  140  9.999999999999999e-33  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  37.79 
 
 
289 aa  140  1.9999999999999998e-32  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  37.14 
 
 
260 aa  140  1.9999999999999998e-32  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  37.55 
 
 
266 aa  140  1.9999999999999998e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  37 
 
 
261 aa  138  1e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  34.13 
 
 
264 aa  137  2e-31  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  32.43 
 
 
257 aa  135  6.0000000000000005e-31  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  34.84 
 
 
262 aa  135  7.000000000000001e-31  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  35.92 
 
 
266 aa  134  9.999999999999999e-31  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  32.27 
 
 
257 aa  130  2.0000000000000002e-29  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  37.76 
 
 
259 aa  129  4.0000000000000003e-29  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_010581  Bind_3244  short-chain dehydrogenase/reductase SDR  37.15 
 
 
262 aa  126  4.0000000000000003e-28  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1382  hypothetical protein  33.74 
 
 
259 aa  125  6e-28  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  34.84 
 
 
272 aa  125  7e-28  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  33.33 
 
 
271 aa  124  1e-27  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  31.78 
 
 
263 aa  124  2e-27  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  37.34 
 
 
263 aa  124  2e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  33.74 
 
 
257 aa  124  2e-27  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  35.27 
 
 
343 aa  124  2e-27  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  35.66 
 
 
258 aa  122  5e-27  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_008699  Noca_1466  short-chain dehydrogenase/reductase SDR  38.21 
 
 
253 aa  122  5e-27  Nocardioides sp. JS614  Bacteria  normal  0.0605466  n/a   
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  35 
 
 
258 aa  122  8e-27  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  35 
 
 
258 aa  121  9.999999999999999e-27  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_006369  lpl1378  hypothetical protein  33.33 
 
 
259 aa  120  3e-26  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  33.89 
 
 
263 aa  119  3.9999999999999996e-26  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_011004  Rpal_0423  short-chain dehydrogenase/reductase SDR  35.57 
 
 
259 aa  119  4.9999999999999996e-26  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.83571  n/a   
 
 
-
 
NC_014158  Tpau_1341  short-chain dehydrogenase/reductase SDR  36.95 
 
 
268 aa  119  4.9999999999999996e-26  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3329  short-chain dehydrogenase/reductase SDR  32.66 
 
 
256 aa  119  4.9999999999999996e-26  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.227726  hitchhiker  0.00265893 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  33.89 
 
 
321 aa  119  6e-26  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  35.32 
 
 
262 aa  119  7e-26  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  35.65 
 
 
261 aa  117  9.999999999999999e-26  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_2216  short-chain dehydrogenase/reductase SDR  36.51 
 
 
266 aa  117  9.999999999999999e-26  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  35.42 
 
 
267 aa  116  3.9999999999999997e-25  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  32.42 
 
 
267 aa  115  5e-25  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  38.22 
 
 
266 aa  115  6e-25  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_011666  Msil_1841  short-chain dehydrogenase/reductase SDR  35.77 
 
 
266 aa  115  8.999999999999998e-25  Methylocella silvestris BL2  Bacteria  n/a    normal  0.197421 
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  32.92 
 
 
261 aa  115  1.0000000000000001e-24  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  34.14 
 
 
273 aa  114  2.0000000000000002e-24  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  33.2 
 
 
269 aa  114  2.0000000000000002e-24  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  32.91 
 
 
255 aa  114  2.0000000000000002e-24  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0762  short-chain dehydrogenase/reductase SDR  34.47 
 
 
280 aa  114  2.0000000000000002e-24  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_007958  RPD_0689  short-chain dehydrogenase/reductase SDR  36.25 
 
 
259 aa  113  3e-24  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  33.2 
 
 
258 aa  112  5e-24  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_007406  Nwi_0477  short-chain dehydrogenase/reductase SDR  38.7 
 
 
256 aa  112  6e-24  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  31.89 
 
 
261 aa  112  6e-24  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_009484  Acry_1539  short-chain dehydrogenase/reductase SDR  32.89 
 
 
223 aa  112  8.000000000000001e-24  Acidiphilium cryptum JF-5  Bacteria  normal  0.382635  n/a   
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  36.9 
 
 
262 aa  111  1.0000000000000001e-23  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  36.9 
 
 
262 aa  111  1.0000000000000001e-23  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_3522  short-chain dehydrogenase/reductase SDR  30.58 
 
 
289 aa  111  1.0000000000000001e-23  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  34.35 
 
 
261 aa  111  1.0000000000000001e-23  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  36.9 
 
 
262 aa  111  1.0000000000000001e-23  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0274  short chain dehydrogenase/reductase family protein  35.51 
 
 
259 aa  110  2.0000000000000002e-23  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  33.21 
 
 
262 aa  110  2.0000000000000002e-23  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_0294  short-chain dehydrogenase/reductase SDR  35.27 
 
 
264 aa  110  2.0000000000000002e-23  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0304  short-chain dehydrogenase/reductase SDR  35.27 
 
 
264 aa  110  2.0000000000000002e-23  Mycobacterium sp. KMS  Bacteria  normal  normal  0.20364 
 
 
-
 
NC_009636  Smed_1269  short-chain dehydrogenase/reductase SDR  32.93 
 
 
294 aa  110  3e-23  Sinorhizobium medicae WSM419  Bacteria  normal  0.618635  normal  0.87927 
 
 
-
 
NC_009077  Mjls_0285  short-chain dehydrogenase/reductase SDR  35.27 
 
 
264 aa  110  3e-23  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  34.52 
 
 
271 aa  110  3e-23  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  31.5 
 
 
261 aa  110  3e-23  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_013441  Gbro_2014  short-chain dehydrogenase/reductase SDR  36.07 
 
 
268 aa  110  3e-23  Gordonia bronchialis DSM 43247  Bacteria  normal  0.700313  n/a   
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  36.71 
 
 
276 aa  109  4.0000000000000004e-23  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_007778  RPB_0113  short-chain dehydrogenase/reductase SDR  34.66 
 
 
259 aa  109  4.0000000000000004e-23  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886287  normal 
 
 
-
 
NC_007925  RPC_0055  short-chain dehydrogenase/reductase SDR  36.55 
 
 
259 aa  109  5e-23  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_008228  Patl_0906  short-chain dehydrogenase/reductase SDR  32.93 
 
 
273 aa  109  5e-23  Pseudoalteromonas atlantica T6c  Bacteria  normal  0.127379  n/a   
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  36.03 
 
 
264 aa  108  7.000000000000001e-23  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  29.84 
 
 
258 aa  107  1e-22  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_013530  Xcel_3148  short-chain dehydrogenase/reductase SDR  37.95 
 
 
259 aa  108  1e-22  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_009565  TBFG_12531  short-chain type dehydrogenase/reductase  33.87 
 
 
268 aa  107  2e-22  Mycobacterium tuberculosis F11  Bacteria  normal  hitchhiker  0.00342881 
 
 
-
 
NC_013510  Tcur_3511  short-chain dehydrogenase/reductase SDR  33.93 
 
 
264 aa  107  2e-22  Thermomonospora curvata DSM 43183  Bacteria  normal  0.531457  n/a   
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  32.95 
 
 
275 aa  107  2e-22  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  36.07 
 
 
269 aa  106  4e-22  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  35.98 
 
 
265 aa  106  4e-22  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  33.08 
 
 
257 aa  106  4e-22  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  34.87 
 
 
263 aa  105  5e-22  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_008530  LGAS_0875  Short-chain dehydrogenase of various substrate specificities  34.3 
 
 
264 aa  106  5e-22  Lactobacillus gasseri ATCC 33323  Bacteria  normal  hitchhiker  0.00123287 
 
 
-
 
NC_007964  Nham_0606  short-chain dehydrogenase/reductase SDR  36.73 
 
 
256 aa  105  6e-22  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  29.88 
 
 
262 aa  105  6e-22  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_63890  putative short-chain dehydrogenase  35.75 
 
 
265 aa  105  6e-22  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
BN001305  ANIA_08398  conserved hypothetical protein  29.39 
 
 
364 aa  105  8e-22  Aspergillus nidulans FGSC A4  Eukaryota  normal  normal 
 
 
-
 
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