More than 300 homologs were found in PanDaTox collection
for query gene Bind_3244 on replicon NC_010581
Organism: Beijerinckia indica subsp. indica ATCC 9039



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010581  Bind_3244  short-chain dehydrogenase/reductase SDR  100 
 
 
262 aa  522  1e-147  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1841  short-chain dehydrogenase/reductase SDR  55.94 
 
 
266 aa  288  5.0000000000000004e-77  Methylocella silvestris BL2  Bacteria  n/a    normal  0.197421 
 
 
-
 
NC_009485  BBta_0274  short chain dehydrogenase/reductase family protein  51.36 
 
 
259 aa  244  8e-64  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_0113  short-chain dehydrogenase/reductase SDR  49.42 
 
 
259 aa  238  6.999999999999999e-62  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886287  normal 
 
 
-
 
NC_011004  Rpal_0423  short-chain dehydrogenase/reductase SDR  49.42 
 
 
259 aa  237  1e-61  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.83571  n/a   
 
 
-
 
NC_007925  RPC_0055  short-chain dehydrogenase/reductase SDR  49.81 
 
 
259 aa  235  4e-61  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_0689  short-chain dehydrogenase/reductase SDR  48.64 
 
 
259 aa  232  6e-60  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0606  short-chain dehydrogenase/reductase SDR  49.61 
 
 
256 aa  217  1e-55  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0477  short-chain dehydrogenase/reductase SDR  49.22 
 
 
256 aa  217  2e-55  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  42.97 
 
 
256 aa  201  9.999999999999999e-51  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  40.31 
 
 
257 aa  189  5e-47  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  39.53 
 
 
257 aa  185  5e-46  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  43.63 
 
 
267 aa  181  1e-44  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  43.24 
 
 
267 aa  179  2.9999999999999997e-44  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  43.24 
 
 
267 aa  179  2.9999999999999997e-44  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  43.73 
 
 
262 aa  179  4.999999999999999e-44  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  46.83 
 
 
259 aa  174  9.999999999999999e-43  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  36.33 
 
 
257 aa  172  5.999999999999999e-42  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  40.38 
 
 
264 aa  172  5.999999999999999e-42  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  37.79 
 
 
263 aa  170  3e-41  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_009636  Smed_1269  short-chain dehydrogenase/reductase SDR  40 
 
 
294 aa  170  3e-41  Sinorhizobium medicae WSM419  Bacteria  normal  0.618635  normal  0.87927 
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  37.75 
 
 
260 aa  164  1.0000000000000001e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  47.33 
 
 
265 aa  162  7e-39  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  37.9 
 
 
258 aa  162  8.000000000000001e-39  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  36.4 
 
 
267 aa  160  2e-38  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  42.52 
 
 
262 aa  159  5e-38  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  40.4 
 
 
263 aa  158  9e-38  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  41.13 
 
 
259 aa  156  4e-37  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  44.53 
 
 
276 aa  156  4e-37  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  40.08 
 
 
273 aa  155  5.0000000000000005e-37  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_0089  short-chain dehydrogenase/reductase SDR  41.02 
 
 
264 aa  155  5.0000000000000005e-37  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  39.53 
 
 
258 aa  155  5.0000000000000005e-37  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  37.12 
 
 
265 aa  155  7e-37  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_008254  Meso_3522  short-chain dehydrogenase/reductase SDR  37.8 
 
 
289 aa  153  2.9999999999999998e-36  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_010717  PXO_01284  dehydrogenase  40.86 
 
 
266 aa  153  2.9999999999999998e-36  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  44.87 
 
 
289 aa  152  4e-36  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  36.43 
 
 
344 aa  147  2.0000000000000003e-34  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  39.6 
 
 
258 aa  146  3e-34  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  39.92 
 
 
258 aa  145  5e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_38500  short-chain dehydrogenase of unknown substrate specificity  40.87 
 
 
253 aa  145  5e-34  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  38.4 
 
 
360 aa  145  6e-34  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  37.11 
 
 
257 aa  145  6e-34  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  39.66 
 
 
271 aa  145  8.000000000000001e-34  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  40.46 
 
 
267 aa  145  8.000000000000001e-34  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  40.66 
 
 
272 aa  145  9e-34  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  39.92 
 
 
258 aa  144  2e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  43.4 
 
 
258 aa  144  2e-33  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  40.08 
 
 
266 aa  144  2e-33  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_010002  Daci_2044  short-chain dehydrogenase/reductase SDR  41.7 
 
 
260 aa  143  3e-33  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.756544 
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  40.65 
 
 
263 aa  143  3e-33  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  41.94 
 
 
266 aa  142  5e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  40.64 
 
 
262 aa  142  5e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  47.64 
 
 
262 aa  142  7e-33  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  41.63 
 
 
269 aa  141  8e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  38.27 
 
 
257 aa  141  9.999999999999999e-33  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  33.07 
 
 
259 aa  140  1.9999999999999998e-32  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  38.59 
 
 
321 aa  139  3e-32  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  47.64 
 
 
262 aa  140  3e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  40.73 
 
 
266 aa  139  3e-32  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  47.64 
 
 
262 aa  140  3e-32  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_006368  lpp1382  hypothetical protein  33.07 
 
 
259 aa  139  3.9999999999999997e-32  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  37.84 
 
 
261 aa  139  6e-32  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  38.17 
 
 
263 aa  137  1e-31  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  36.24 
 
 
261 aa  136  3.0000000000000003e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  37.45 
 
 
261 aa  136  4e-31  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  39.22 
 
 
259 aa  135  9e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_009077  Mjls_0469  short-chain dehydrogenase/reductase SDR  40.15 
 
 
258 aa  134  9.999999999999999e-31  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  35.63 
 
 
298 aa  134  9.999999999999999e-31  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_008146  Mmcs_0480  short-chain dehydrogenase/reductase SDR  39.38 
 
 
258 aa  133  1.9999999999999998e-30  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2064  oxidoreductase ( short-chain dehydrogenase)  36.09 
 
 
264 aa  134  1.9999999999999998e-30  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.694867  normal  0.0846624 
 
 
-
 
NC_008705  Mkms_0491  short-chain dehydrogenase/reductase SDR  39.38 
 
 
258 aa  133  1.9999999999999998e-30  Mycobacterium sp. KMS  Bacteria  normal  normal  0.354983 
 
 
-
 
NC_009485  BBta_3264  putative oxidoreductase protein  38.4 
 
 
264 aa  131  9e-30  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.724633  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  36.61 
 
 
264 aa  131  1.0000000000000001e-29  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  34.8 
 
 
269 aa  131  1.0000000000000001e-29  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  38.14 
 
 
261 aa  130  2.0000000000000002e-29  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0312  short-chain dehydrogenase/reductase SDR  35.89 
 
 
261 aa  130  2.0000000000000002e-29  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.0000113464  decreased coverage  0.000120518 
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  35.18 
 
 
260 aa  129  4.0000000000000003e-29  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  38.93 
 
 
259 aa  129  5.0000000000000004e-29  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0516  short-chain dehydrogenase/reductase SDR  35.97 
 
 
263 aa  128  9.000000000000001e-29  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_013132  Cpin_6133  short-chain dehydrogenase/reductase SDR  32.18 
 
 
263 aa  127  1.0000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_013132  Cpin_3329  short-chain dehydrogenase/reductase SDR  32.81 
 
 
256 aa  128  1.0000000000000001e-28  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.227726  hitchhiker  0.00265893 
 
 
-
 
NC_007511  Bcep18194_B1706  Short-chain dehydrogenase/reductase SDR  38.11 
 
 
266 aa  127  2.0000000000000002e-28  Burkholderia sp. 383  Bacteria  normal  0.951732  normal 
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  36.61 
 
 
343 aa  126  3e-28  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_013441  Gbro_2014  short-chain dehydrogenase/reductase SDR  38.13 
 
 
268 aa  126  3e-28  Gordonia bronchialis DSM 43247  Bacteria  normal  0.700313  n/a   
 
 
-
 
NC_008255  CHU_3621  short-chain dehydrogenase  34.58 
 
 
258 aa  126  3e-28  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_1224  short-chain dehydrogenase/reductase SDR  37.15 
 
 
261 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  hitchhiker  0.000362575 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  35.34 
 
 
261 aa  126  4.0000000000000003e-28  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_012669  Bcav_3647  short-chain dehydrogenase/reductase SDR  38.87 
 
 
255 aa  125  5e-28  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  37.21 
 
 
275 aa  125  5e-28  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  38.43 
 
 
262 aa  125  5e-28  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_014158  Tpau_0582  short-chain dehydrogenase/reductase SDR  37.84 
 
 
266 aa  125  8.000000000000001e-28  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  36.18 
 
 
261 aa  125  9e-28  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_013757  Gobs_3857  short-chain dehydrogenase/reductase SDR  39.68 
 
 
263 aa  124  1e-27  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_1619  short-chain dehydrogenase/reductase SDR  40.39 
 
 
271 aa  124  1e-27  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.61951 
 
 
-
 
NC_012853  Rleg_5590  short-chain dehydrogenase/reductase SDR  34.52 
 
 
266 aa  124  1e-27  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.263195  hitchhiker  0.00574732 
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  39.08 
 
 
258 aa  124  1e-27  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_4061  short-chain dehydrogenase/reductase SDR  38.11 
 
 
281 aa  124  1e-27  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.786818  n/a   
 
 
-
 
NC_008543  Bcen2424_4305  short-chain dehydrogenase/reductase SDR  38.11 
 
 
281 aa  124  1e-27  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.699263 
 
 
-
 
NC_007974  Rmet_4523  short-chain dehydrogenase/reductase SDR  38.98 
 
 
266 aa  124  2e-27  Cupriavidus metallidurans CH34  Bacteria  normal  0.642907  decreased coverage  0.0040913 
 
 
-
 
NC_008391  Bamb_3723  short-chain dehydrogenase/reductase SDR  37.5 
 
 
266 aa  124  2e-27  Burkholderia ambifaria AMMD  Bacteria  normal  0.662669  normal  0.858524 
 
 
-
 
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