More than 300 homologs were found in PanDaTox collection
for query gene Rpal_0423 on replicon NC_011004
Organism: Rhodopseudomonas palustris TIE-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011004  Rpal_0423  short-chain dehydrogenase/reductase SDR  100 
 
 
259 aa  514  1.0000000000000001e-145  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.83571  n/a   
 
 
-
 
NC_007778  RPB_0113  short-chain dehydrogenase/reductase SDR  84.94 
 
 
259 aa  447  1e-125  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.886287  normal 
 
 
-
 
NC_007958  RPD_0689  short-chain dehydrogenase/reductase SDR  84.17 
 
 
259 aa  441  1e-123  Rhodopseudomonas palustris BisB5  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_0055  short-chain dehydrogenase/reductase SDR  74.9 
 
 
259 aa  390  1e-107  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009485  BBta_0274  short chain dehydrogenase/reductase family protein  69.38 
 
 
259 aa  367  1e-101  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_007964  Nham_0606  short-chain dehydrogenase/reductase SDR  71.76 
 
 
256 aa  358  4e-98  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_007406  Nwi_0477  short-chain dehydrogenase/reductase SDR  68.63 
 
 
256 aa  326  2.0000000000000001e-88  Nitrobacter winogradskyi Nb-255  Bacteria  normal  normal 
 
 
-
 
NC_010581  Bind_3244  short-chain dehydrogenase/reductase SDR  49.42 
 
 
262 aa  237  1e-61  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_1841  short-chain dehydrogenase/reductase SDR  51.16 
 
 
266 aa  226  2e-58  Methylocella silvestris BL2  Bacteria  n/a    normal  0.197421 
 
 
-
 
NC_011729  PCC7424_4642  short-chain dehydrogenase/reductase SDR  45.49 
 
 
264 aa  208  7e-53  Cyanothece sp. PCC 7424  Bacteria  n/a    hitchhiker  0.0000000179752 
 
 
-
 
NC_013202  Hmuk_1178  short-chain dehydrogenase/reductase SDR  49.38 
 
 
259 aa  195  6e-49  Halomicrobium mukohataei DSM 12286  Archaea  normal  0.82399  normal 
 
 
-
 
NC_008009  Acid345_1611  short-chain dehydrogenase/reductase SDR  43.24 
 
 
262 aa  188  1e-46  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_1572  Short-chain dehydrogenase/reductase SDR  42.25 
 
 
263 aa  186  4e-46  Anabaena variabilis ATCC 29413  Bacteria  normal  normal  0.577459 
 
 
-
 
NC_013517  Sterm_1096  short-chain dehydrogenase/reductase SDR  44.74 
 
 
256 aa  184  1.0000000000000001e-45  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_3911  short-chain dehydrogenase/reductase SDR  43.02 
 
 
267 aa  181  9.000000000000001e-45  'Nostoc azollae' 0708  Bacteria  normal  0.322734  n/a   
 
 
-
 
NC_010571  Oter_2864  short-chain dehydrogenase/reductase SDR  45.93 
 
 
289 aa  177  1e-43  Opitutus terrae PB90-1  Bacteria  normal  normal  0.327148 
 
 
-
 
NC_008261  CPF_2906  short chain dehydrogenase/reductase family oxidoreductase  40.16 
 
 
257 aa  176  3e-43  Clostridium perfringens ATCC 13124  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_1269  short-chain dehydrogenase/reductase SDR  42.35 
 
 
294 aa  176  5e-43  Sinorhizobium medicae WSM419  Bacteria  normal  0.618635  normal  0.87927 
 
 
-
 
NC_008262  CPR_2585  short chain dehydrogenase/reductase family oxidoreductase  39.37 
 
 
257 aa  172  5.999999999999999e-42  Clostridium perfringens SM101  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_3398  short-chain dehydrogenase/reductase SDR  46.93 
 
 
265 aa  169  3e-41  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.162957 
 
 
-
 
NC_014148  Plim_1352  short-chain dehydrogenase/reductase SDR  41.22 
 
 
271 aa  168  9e-41  Planctomyces limnophilus DSM 3776  Bacteria  normal  0.708878  n/a   
 
 
-
 
NC_011894  Mnod_4423  short-chain dehydrogenase/reductase SDR  44.81 
 
 
276 aa  168  1e-40  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.235547  n/a   
 
 
-
 
NC_009784  VIBHAR_05256  short-chain dehydrogenase/reductase SDR  41.56 
 
 
259 aa  166  2e-40  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_013440  Hoch_2231  short-chain dehydrogenase/reductase SDR  40.82 
 
 
263 aa  167  2e-40  Haliangium ochraceum DSM 14365  Bacteria  normal  0.19807  normal 
 
 
-
 
NC_007005  Psyr_4572  Short-chain dehydrogenase/reductase SDR  38.89 
 
 
258 aa  165  5.9999999999999996e-40  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_08440  putative short chain alcohol dehydrogenase  40.24 
 
 
266 aa  164  1.0000000000000001e-39  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000000229698 
 
 
-
 
NC_007492  Pfl01_5106  Short-chain dehydrogenase/reductase SDR  41.46 
 
 
262 aa  163  2.0000000000000002e-39  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.311622  normal  0.753041 
 
 
-
 
NC_013515  Smon_1006  short-chain dehydrogenase/reductase SDR  36.4 
 
 
257 aa  163  2.0000000000000002e-39  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009439  Pmen_3938  short-chain dehydrogenase/reductase SDR  39.92 
 
 
262 aa  163  3e-39  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_0601  oxidoreductase, short chain dehydrogenase/reductase family  38.1 
 
 
258 aa  163  3e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_1536  short-chain dehydrogenase/reductase SDR  36.78 
 
 
260 aa  163  3e-39  Geobacter uraniireducens Rf4  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_0138  short-chain dehydrogenase/reductase SDR  42.39 
 
 
273 aa  161  1e-38  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_006369  lpl1378  hypothetical protein  38.87 
 
 
259 aa  160  2e-38  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_5585  short-chain dehydrogenase/reductase SDR  40.08 
 
 
265 aa  160  2e-38  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.892025  normal  0.853623 
 
 
-
 
NC_013132  Cpin_5008  short-chain dehydrogenase/reductase SDR  40.43 
 
 
298 aa  160  2e-38  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0468951  hitchhiker  0.00252787 
 
 
-
 
NC_009656  PSPA7_0799  short chain dehydrogenase/reductase family oxidoreductase  39.43 
 
 
266 aa  158  6e-38  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1382  hypothetical protein  37.86 
 
 
259 aa  158  1e-37  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_009565  TBFG_11577  ketoacyl reductase  42.86 
 
 
267 aa  157  2e-37  Mycobacterium tuberculosis F11  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2044  short-chain dehydrogenase/reductase SDR  39.92 
 
 
260 aa  155  4e-37  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.756544 
 
 
-
 
NC_013161  Cyan8802_0137  short-chain dehydrogenase/reductase SDR  39.22 
 
 
261 aa  155  5.0000000000000005e-37  Cyanothece sp. PCC 8802  Bacteria  normal  hitchhiker  0.00000076045 
 
 
-
 
NC_008254  Meso_3522  short-chain dehydrogenase/reductase SDR  39.39 
 
 
289 aa  155  5.0000000000000005e-37  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_4202  short-chain dehydrogenase/reductase SDR  38.49 
 
 
344 aa  155  5.0000000000000005e-37  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_008312  Tery_1795  short-chain dehydrogenase/reductase SDR  39.13 
 
 
264 aa  155  7e-37  Trichodesmium erythraeum IMS101  Bacteria  normal  0.711928  normal 
 
 
-
 
NC_009077  Mjls_4315  short-chain dehydrogenase/reductase SDR  38.49 
 
 
267 aa  155  8e-37  Mycobacterium sp. JLS  Bacteria  normal  normal  0.294207 
 
 
-
 
NC_007413  Ava_1011  Short-chain dehydrogenase/reductase SDR  38.59 
 
 
258 aa  154  1e-36  Anabaena variabilis ATCC 29413  Bacteria  normal  0.968961  hitchhiker  0.00922057 
 
 
-
 
NC_011726  PCC8801_0140  short-chain dehydrogenase/reductase SDR  38.82 
 
 
261 aa  153  2.9999999999999998e-36  Cyanothece sp. PCC 8801  Bacteria  n/a    n/a   
 
 
-
 
NC_008146  Mmcs_4085  short-chain dehydrogenase/reductase SDR  38.1 
 
 
267 aa  152  5.9999999999999996e-36  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_4161  short-chain dehydrogenase/reductase SDR  38.1 
 
 
267 aa  152  5.9999999999999996e-36  Mycobacterium sp. KMS  Bacteria  normal  0.209625  normal 
 
 
-
 
NC_007512  Plut_1969  short chain dehydrogenase/reductase family oxidoreductase  41.06 
 
 
260 aa  151  8e-36  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0497  short-chain dehydrogenase/reductase SDR  38.96 
 
 
360 aa  151  1e-35  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_011729  PCC7424_1836  short-chain dehydrogenase/reductase SDR  35.71 
 
 
260 aa  149  3e-35  Cyanothece sp. PCC 7424  Bacteria  n/a    normal 
 
 
-
 
NC_008726  Mvan_3113  short-chain dehydrogenase/reductase SDR  40.91 
 
 
262 aa  149  3e-35  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.999856 
 
 
-
 
NC_013132  Cpin_4109  short-chain dehydrogenase/reductase SDR  36.55 
 
 
269 aa  149  4e-35  Chitinophaga pinensis DSM 2588  Bacteria  normal  hitchhiker  0.00421935 
 
 
-
 
NC_013165  Shel_18580  short-chain dehydrogenase of unknown substrate specificity  37.66 
 
 
258 aa  149  5e-35  Slackia heliotrinireducens DSM 20476  Bacteria  normal  0.489964  normal 
 
 
-
 
NC_010338  Caul_4770  short-chain dehydrogenase/reductase SDR  38.95 
 
 
266 aa  149  6e-35  Caulobacter sp. K31  Bacteria  normal  normal  0.228735 
 
 
-
 
NC_004578  PSPTO_4275  oxidoreductase, short-chain dehydrogenase/reductase family  39.29 
 
 
261 aa  148  8e-35  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_3300  short-chain dehydrogenase/reductase SDR  36.65 
 
 
272 aa  148  8e-35  Haliangium ochraceum DSM 14365  Bacteria  normal  0.605078  normal  0.514892 
 
 
-
 
NC_013441  Gbro_2014  short-chain dehydrogenase/reductase SDR  40 
 
 
268 aa  146  3e-34  Gordonia bronchialis DSM 43247  Bacteria  normal  0.700313  n/a   
 
 
-
 
NC_009718  Fnod_0523  short-chain dehydrogenase/reductase SDR  35.89 
 
 
255 aa  144  2e-33  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013203  Apar_0041  short-chain dehydrogenase/reductase SDR  37.04 
 
 
257 aa  143  3e-33  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_3131  short-chain dehydrogenase/reductase SDR  33.07 
 
 
258 aa  142  4e-33  Pedobacter heparinus DSM 2366  Bacteria  normal  0.859893  normal 
 
 
-
 
NC_008726  Mvan_3324  short-chain dehydrogenase/reductase SDR  39.92 
 
 
269 aa  142  5e-33  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.377978 
 
 
-
 
NC_010831  Cphamn1_0312  short-chain dehydrogenase/reductase SDR  36.89 
 
 
261 aa  142  7e-33  Chlorobium phaeobacteroides BS1  Bacteria  hitchhiker  0.0000113464  decreased coverage  0.000120518 
 
 
-
 
NC_012917  PC1_2681  short-chain dehydrogenase/reductase SDR  38.27 
 
 
261 aa  141  9.999999999999999e-33  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_6133  short-chain dehydrogenase/reductase SDR  37.3 
 
 
263 aa  141  9.999999999999999e-33  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_0177  short-chain dehydrogenase/reductase SDR  40.71 
 
 
262 aa  140  1.9999999999999998e-32  Mycobacterium sp. JLS  Bacteria  normal  normal  0.721122 
 
 
-
 
NC_013510  Tcur_3579  short-chain dehydrogenase/reductase SDR  41.85 
 
 
258 aa  140  1.9999999999999998e-32  Thermomonospora curvata DSM 43183  Bacteria  normal  0.392131  n/a   
 
 
-
 
NC_014158  Tpau_1341  short-chain dehydrogenase/reductase SDR  39.68 
 
 
268 aa  140  1.9999999999999998e-32  Tsukamurella paurometabola DSM 20162  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_0188  short-chain dehydrogenase/reductase SDR  40.71 
 
 
262 aa  140  1.9999999999999998e-32  Mycobacterium sp. MCS  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_3538  short-chain dehydrogenase/reductase SDR  39.13 
 
 
259 aa  140  1.9999999999999998e-32  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.0177311  normal  0.151964 
 
 
-
 
NC_013501  Rmar_1809  short-chain dehydrogenase/reductase SDR  42.49 
 
 
263 aa  140  1.9999999999999998e-32  Rhodothermus marinus DSM 4252  Bacteria  normal  n/a   
 
 
-
 
NC_008705  Mkms_0197  short-chain dehydrogenase/reductase SDR  40.71 
 
 
262 aa  140  1.9999999999999998e-32  Mycobacterium sp. KMS  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0281  short-chain dehydrogenase/reductase SDR  36.21 
 
 
255 aa  139  3.9999999999999997e-32  Prosthecochloris aestuarii DSM 271  Bacteria  hitchhiker  0.000634692  hitchhiker  0.00117931 
 
 
-
 
NC_008255  CHU_2063  short-chain dehydrogenase  37.44 
 
 
261 aa  139  6e-32  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.0247773  normal  0.17766 
 
 
-
 
NC_013730  Slin_2448  short-chain dehydrogenase/reductase SDR  35.25 
 
 
257 aa  138  8.999999999999999e-32  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc2321  dehydrogenase/reductase oxidoreductase protein  38.27 
 
 
275 aa  137  1e-31  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.195083 
 
 
-
 
NC_008255  CHU_2064  oxidoreductase ( short-chain dehydrogenase)  35.16 
 
 
264 aa  137  1e-31  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.694867  normal  0.0846624 
 
 
-
 
NC_013093  Amir_6941  short-chain dehydrogenase/reductase SDR  38.65 
 
 
259 aa  138  1e-31  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008639  Cpha266_0226  short-chain dehydrogenase/reductase SDR  37.76 
 
 
259 aa  137  1e-31  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.996462  n/a   
 
 
-
 
NC_009338  Mflv_0244  short-chain dehydrogenase/reductase SDR  38.8 
 
 
258 aa  137  2e-31  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal 
 
 
-
 
NC_013204  Elen_0666  short-chain dehydrogenase/reductase SDR  36.48 
 
 
343 aa  136  3.0000000000000003e-31  Eggerthella lenta DSM 2243  Bacteria  normal  0.019294  hitchhiker  0.000464867 
 
 
-
 
NC_009441  Fjoh_3794  short-chain dehydrogenase/reductase SDR  33.07 
 
 
262 aa  136  4e-31  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_3974  short-chain dehydrogenase/reductase SDR  39.76 
 
 
264 aa  135  6.0000000000000005e-31  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.036497  normal  0.609933 
 
 
-
 
NC_013517  Sterm_2330  short-chain dehydrogenase/reductase SDR  38.22 
 
 
257 aa  135  7.000000000000001e-31  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.000620196  n/a   
 
 
-
 
NC_007777  Francci3_0351  short-chain dehydrogenase/reductase SDR  39.68 
 
 
291 aa  134  9.999999999999999e-31  Frankia sp. CcI3  Bacteria  normal  normal 
 
 
-
 
NC_009953  Sare_4948  short-chain dehydrogenase/reductase SDR  36.82 
 
 
253 aa  134  1.9999999999999998e-30  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.623441 
 
 
-
 
NC_013235  Namu_5163  short-chain dehydrogenase/reductase SDR  38.52 
 
 
258 aa  134  1.9999999999999998e-30  Nakamurella multipartita DSM 44233  Bacteria  normal  normal 
 
 
-
 
NC_012792  Vapar_6207  short-chain dehydrogenase/reductase SDR  37.5 
 
 
277 aa  133  3e-30  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6118  short-chain dehydrogenase/reductase SDR  38 
 
 
275 aa  133  3e-30  Burkholderia ambifaria AMMD  Bacteria  normal  0.304156  normal  0.200034 
 
 
-
 
NC_013421  Pecwa_1556  short-chain dehydrogenase/reductase SDR  35.8 
 
 
261 aa  132  6e-30  Pectobacterium wasabiae WPP163  Bacteria  normal  0.596662  n/a   
 
 
-
 
NC_013521  Sked_35320  short-chain dehydrogenase of unknown substrate specificity  37.96 
 
 
249 aa  132  6.999999999999999e-30  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.135035  normal  0.316469 
 
 
-
 
NC_011884  Cyan7425_0445  short-chain dehydrogenase/reductase SDR  36.82 
 
 
267 aa  131  1.0000000000000001e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.810235  normal  0.221701 
 
 
-
 
NC_009727  CBUD_1145  short chain dehydrogenase  32.16 
 
 
321 aa  131  1.0000000000000001e-29  Coxiella burnetii Dugway 5J108-111  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_0661  short-chain dehydrogenase/reductase SDR  38 
 
 
258 aa  131  1.0000000000000001e-29  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.381329 
 
 
-
 
NC_010117  COXBURSA331_A1015  short chain dehydrogenase/reductase family oxidoreductase  32.16 
 
 
263 aa  130  2.0000000000000002e-29  Coxiella burnetii RSA 331  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_0129  short-chain dehydrogenase/reductase SDR  36.14 
 
 
269 aa  130  3e-29  Salinispora arenicola CNS-205  Bacteria  normal  decreased coverage  0.0000288771 
 
 
-
 
NC_009664  Krad_0779  short-chain dehydrogenase/reductase SDR  44.9 
 
 
286 aa  130  3e-29  Kineococcus radiotolerans SRS30216  Bacteria  hitchhiker  0.00749167  decreased coverage  0.00042824 
 
 
-
 
NC_010322  PputGB1_0459  short-chain dehydrogenase/reductase SDR  36.33 
 
 
260 aa  130  3e-29  Pseudomonas putida GB-1  Bacteria  normal  normal  0.240703 
 
 
-
 
NC_010501  PputW619_4774  short-chain dehydrogenase/reductase SDR  34.38 
 
 
260 aa  129  4.0000000000000003e-29  Pseudomonas putida W619  Bacteria  normal  normal  0.45506 
 
 
-
 
NC_011884  Cyan7425_1889  short-chain dehydrogenase/reductase SDR  40.22 
 
 
264 aa  129  4.0000000000000003e-29  Cyanothece sp. PCC 7425  Bacteria  normal  0.0188274  normal 
 
 
-
 
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