Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_0113 |
Symbol | |
ID | 3909700 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 123314 |
End bp | 124093 |
Gene Length | 780 bp |
Protein Length | 259 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637881995 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_483736 |
Protein GI | 86747240 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.886287 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACTGAAC GCGTGACGTT GATAACGGGG GCATCGGCTG GCATCGGCAC GGAGCTGGCG CGCATTTTCG CGGCAAATGC TCACAGAGTG GCCTTGGTGG CGCGACGCGC CGACCGGCTC GAGGCGCTGG CTGCGGAAAT CACGGCCAAG GGCGGCAAGG AACCGATCAT CATCGTCTGC GATCTGGCGA AGCCCGAGGC GGTCGACGAG ATCGTGGCCC GGCTGACTGC GGCCGGGGTC GAGGTCGAGT ACCTCGTCAA CAATGCCGGC TATGGCCTGT TCGGCCGCGC CGCGGAGATC GACCGCGAGG ATCAGCTCGG CATCATCGAC GTCAATATCC GCGCGCTGAC CGACCTGTCG CTGCGCTTCG CCGACAGCGT CGCGAAACTG CGCGGCGGCA TCCTCAACGT CGCGTCGATC GCCAGCTTCC TGCCGGGGCC CGGCATGGCG GTGTACTATG CCTCCAAGGC CTATGTGCTG TCGCTGAGCG AGGCGCTGCA TCAGGAACTG GGCAAGAAGG GCGTCAGGGT CACGGCGATC TGTCCTGGGC CGGTGTCGAC CGAATTCCAG TCGCGCGCGG GCTTCGAGCC CGGCTTCGAT TCGGCGGTGC TCAACGTCTC GCCCGCCGAG GTCGCCCGCC AAGGTTATCA GGGGCTGATG AACAACAGGC GGCTGGTGTT GCCGGGCCTC GGCGTCAAGA TCGTGCCGTT CCTGCTGCGA TTCTTCCCGC GCGGCTTCAT TCTGGCCGCG GTCGGCGGCT ATCAGCAGCG GCAGCGCTGA
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Protein sequence | MTERVTLITG ASAGIGTELA RIFAANAHRV ALVARRADRL EALAAEITAK GGKEPIIIVC DLAKPEAVDE IVARLTAAGV EVEYLVNNAG YGLFGRAAEI DREDQLGIID VNIRALTDLS LRFADSVAKL RGGILNVASI ASFLPGPGMA VYYASKAYVL SLSEALHQEL GKKGVRVTAI CPGPVSTEFQ SRAGFEPGFD SAVLNVSPAE VARQGYQGLM NNRRLVLPGL GVKIVPFLLR FFPRGFILAA VGGYQQRQR
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