Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPC_1224 |
Symbol | |
ID | 3969101 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris BisB18 |
Kingdom | Bacteria |
Replicon accession | NC_007925 |
Strand | + |
Start bp | 1339826 |
End bp | 1340611 |
Gene Length | 786 bp |
Protein Length | 261 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637924335 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_531106 |
Protein GI | 90422736 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.000362575 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGTCATTGC AACGCCGCTT CGCCATCGTC ACCGGAGCGT CTACCGGGAT CGGTTTGGAG TTGGCGAGAT GCTGCGCCAA GGACGGCTTC GATCTGCTGA TCGCCGCCGA CGAGGACAGG ATTCACCAGG CCGCCGCCGA ACTGAGAGCG ACGGGAGCGG ACGTCGAGGC CGCACAAGTC GACCTCTCCA CGATGGACGG AGTCGACAGG CTTTACGCCG CGACCGAGGC AAGGCCGGTG GACGCGCTGT TGGCGAATGC GGGGCGCGGT CTCGGCCACG CTTTTCTCGA TCAGGATTTT GCCAAGGCGC GCAGCGTCAT CGACACCAAC ATCACCGGCA CGGCCTATCT GATCCACAAG ATCGGTAACG ACATGCGGCG GCGCAAATCC GGCCGTATTC TGATTACCGG ATCGATTGCC GGCTTCGTTC CCGGCAGCTT CCAGGCGGTG TACAGCGCGA GCAAGGCGTT CCTGAATTCC TTCTCTTTTG CGATTCGTGA GGAGTTGAAG GACAGCGGCG TCAGCGTGAC GTGCCTGATG CCGGGGGCAA CAAACACCGA GTTCTTCCGG CGCGCCGATA TGTTGGATAC CAGCGTCGGC ACCATCGGCA AGGACGATCC TTGCTATGTC GCCAGGATCG GCTTCGATGC GATGATGAGC GGCGAGGGTG ACGTGGTCAG CGGCTGGAAG AACAAGCTCC AGTCGAGGGT CGCCCATGTT GTGCCGGCCG GCGTGTTGGC GTCGCAGCAC CGCAAATGGG CGGAGCCAGG GACGGCGAAG GACTGA
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Protein sequence | MSLQRRFAIV TGASTGIGLE LARCCAKDGF DLLIAADEDR IHQAAAELRA TGADVEAAQV DLSTMDGVDR LYAATEARPV DALLANAGRG LGHAFLDQDF AKARSVIDTN ITGTAYLIHK IGNDMRRRKS GRILITGSIA GFVPGSFQAV YSASKAFLNS FSFAIREELK DSGVSVTCLM PGATNTEFFR RADMLDTSVG TIGKDDPCYV ARIGFDAMMS GEGDVVSGWK NKLQSRVAHV VPAGVLASQH RKWAEPGTAK D
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