Gene RPC_1224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPC_1224 
Symbol 
ID3969101 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris BisB18 
KingdomBacteria 
Replicon accessionNC_007925 
Strand
Start bp1339826 
End bp1340611 
Gene Length786 bp 
Protein Length261 aa 
Translation table11 
GC content63% 
IMG OID637924335 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_531106 
Protein GI90422736 
COG category[R] General function prediction only 
COG ID[COG0300] Short-chain dehydrogenases of various substrate specificities 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000362575 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGTCATTGC AACGCCGCTT CGCCATCGTC ACCGGAGCGT CTACCGGGAT CGGTTTGGAG 
TTGGCGAGAT GCTGCGCCAA GGACGGCTTC GATCTGCTGA TCGCCGCCGA CGAGGACAGG
ATTCACCAGG CCGCCGCCGA ACTGAGAGCG ACGGGAGCGG ACGTCGAGGC CGCACAAGTC
GACCTCTCCA CGATGGACGG AGTCGACAGG CTTTACGCCG CGACCGAGGC AAGGCCGGTG
GACGCGCTGT TGGCGAATGC GGGGCGCGGT CTCGGCCACG CTTTTCTCGA TCAGGATTTT
GCCAAGGCGC GCAGCGTCAT CGACACCAAC ATCACCGGCA CGGCCTATCT GATCCACAAG
ATCGGTAACG ACATGCGGCG GCGCAAATCC GGCCGTATTC TGATTACCGG ATCGATTGCC
GGCTTCGTTC CCGGCAGCTT CCAGGCGGTG TACAGCGCGA GCAAGGCGTT CCTGAATTCC
TTCTCTTTTG CGATTCGTGA GGAGTTGAAG GACAGCGGCG TCAGCGTGAC GTGCCTGATG
CCGGGGGCAA CAAACACCGA GTTCTTCCGG CGCGCCGATA TGTTGGATAC CAGCGTCGGC
ACCATCGGCA AGGACGATCC TTGCTATGTC GCCAGGATCG GCTTCGATGC GATGATGAGC
GGCGAGGGTG ACGTGGTCAG CGGCTGGAAG AACAAGCTCC AGTCGAGGGT CGCCCATGTT
GTGCCGGCCG GCGTGTTGGC GTCGCAGCAC CGCAAATGGG CGGAGCCAGG GACGGCGAAG
GACTGA
 
Protein sequence
MSLQRRFAIV TGASTGIGLE LARCCAKDGF DLLIAADEDR IHQAAAELRA TGADVEAAQV 
DLSTMDGVDR LYAATEARPV DALLANAGRG LGHAFLDQDF AKARSVIDTN ITGTAYLIHK
IGNDMRRRKS GRILITGSIA GFVPGSFQAV YSASKAFLNS FSFAIREELK DSGVSVTCLM
PGATNTEFFR RADMLDTSVG TIGKDDPCYV ARIGFDAMMS GEGDVVSGWK NKLQSRVAHV
VPAGVLASQH RKWAEPGTAK D