| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mpop_1227 |
|---|
| Symbol | |
|---|
| ID | 6313641 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methylobacterium populi BJ001 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010725 |
|---|
| Strand | - |
|---|
| Start bp | 1313415 |
|---|
| End bp | 1314200 |
|---|
| Gene Length | 786 bp |
|---|
| Protein Length | 261 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642649944 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001923933 |
|---|
| Protein GI | 188580488 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.198957 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.373488 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACGC AACGCCCCCT CGCCCTCGTC ACCGGCGGTT CGTCCGGCAT CGGTTTCGAG
CTGGCCAAGC AGTTCGCCCA GAACGGCTTC GACGTCGCCA TTTCAGGGTC CAGCGACAAG
GTGTTCTCCG CCGCCGATGC CCTGCGCGGA CTCGGCGTCG AGGCCTACCC GCACAAGGCC
GACGCCGCGA CCTATGACGG GGTCGAGGGC TTCTGGACCT TCGTGACCGA ACTCGGCAGG
CCGGTGGAGG CCGCGGCGCT CAATGTCGGC ATCGGCCAGG GCGGCGCCTT CGTCGACAAC
ACGCTGGAGG CCGAATTCCG GCTCATCGCC ATCAACATCA CCGGCACCGT GCATCTCGCC
AAGCGGGTCG TGCAGCACAT GGTCCCGAAG GGACGGGGCC GCATCCTGAT CACGTCCTCG
GTCTCGGCCA CCCTGCCGAC GCCCTACGAG ACCGTCTACG GCCCCTCGAA GGCGTTCGGC
TTCATGTTCG CCGAGAGCCT GCGCGAGGAA CTCCGGGGGA CCGGCGTGAC CGTGACGGCG
CTGCTGCCCG GCGCCACCGA CAGCCAGTTC CACAAGAATG CCGGCATGGC GAGCAGCGCC
ATCGACCAGG GCAAGAAGAA CGACAAGACC GAGGTCGCCC GGCAGGGCTT CGAGGCGCTG
ATGAACGATG TCGATCACGT CGTCGGCGGC GACGAGGAGA CCAAGCAGAC GGTGGTCGAC
AACCGCGTCA CGCCCGAGCC GGTGAAGGCC GCGCGCCATG CCGAGAAGAC CAGGCTTCGG
GCCTGA
|
|---|
| Protein sequence | MTTQRPLALV TGGSSGIGFE LAKQFAQNGF DVAISGSSDK VFSAADALRG LGVEAYPHKA
DAATYDGVEG FWTFVTELGR PVEAAALNVG IGQGGAFVDN TLEAEFRLIA INITGTVHLA
KRVVQHMVPK GRGRILITSS VSATLPTPYE TVYGPSKAFG FMFAESLREE LRGTGVTVTA
LLPGATDSQF HKNAGMASSA IDQGKKNDKT EVARQGFEAL MNDVDHVVGG DEETKQTVVD
NRVTPEPVKA ARHAEKTRLR A
|
|---|
| |