More than 300 homologs were found in PanDaTox collection
for query gene Ppha_1789 on replicon NC_011060
Organism: Pelodictyon phaeoclathratiforme BU-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_011060  Ppha_1789  response regulator receiver protein  100 
 
 
142 aa  289  1e-77  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.34666  n/a   
 
 
-
 
NC_008639  Cpha266_1833  putative PAS/PAC sensor protein  62.7 
 
 
560 aa  166  1e-40  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010803  Clim_1832  putative PAS/PAC sensor protein  59.52 
 
 
543 aa  156  1e-37  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011060  Ppha_1021  putative PAS/PAC sensor protein  53.54 
 
 
564 aa  145  2.0000000000000003e-34  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007512  Plut_1360  putative PAS/PAC sensor protein  47.2 
 
 
536 aa  125  3e-28  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_2716  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  37.7 
 
 
629 aa  89.7  1e-17  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2364  response regulator receiver protein  34.75 
 
 
806 aa  89.4  1e-17  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007298  Daro_0972  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  35.2 
 
 
994 aa  89  2e-17  Dechloromonas aromatica RCB  Bacteria  normal  0.172335  normal 
 
 
-
 
NC_007517  Gmet_3473  response regulator receiver domain-containing protein  36.89 
 
 
823 aa  89.4  2e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_010814  Glov_1895  response regulator receiver protein  38.17 
 
 
185 aa  88.6  3e-17  Geobacter lovleyi SZ  Bacteria  normal  0.706146  n/a   
 
 
-
 
NC_007517  Gmet_3472  response regulator receiver domain-containing protein  35.65 
 
 
187 aa  87.4  6e-17  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_2363  response regulator receiver protein  37.19 
 
 
189 aa  86.7  1e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_010814  Glov_1568  response regulator receiver protein  34.96 
 
 
262 aa  86.7  1e-16  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_2368  putative PAS/PAC sensor protein  38.66 
 
 
270 aa  84.7  4e-16  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007908  Rfer_1980  response regulator receiver modulated metal dependent phosphohydrolase  41.58 
 
 
449 aa  84.3  4e-16  Rhodoferax ferrireducens T118  Bacteria  normal  0.247955  n/a   
 
 
-
 
NC_011071  Smal_1912  cyclic nucleotide-binding protein  33.59 
 
 
590 aa  84.3  5e-16  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0713503  normal  0.243299 
 
 
-
 
NC_007908  Rfer_1982  response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s)  34.19 
 
 
1355 aa  84  7e-16  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008228  Patl_1538  response regulator receiver modulated diguanylate phosphodiesterase  34.43 
 
 
563 aa  83.6  8e-16  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2231  response regulator  33.33 
 
 
475 aa  83.6  9e-16  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II0731  response regulator  33.33 
 
 
476 aa  83.2  0.000000000000001  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2447  signal transduction protein  35.09 
 
 
965 aa  82.8  0.000000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.936876  normal 
 
 
-
 
NC_010717  PXO_01019  Putative signal protein with GGDEF, EAL and two component receiver domains  35.9 
 
 
549 aa  82.4  0.000000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.159296  n/a   
 
 
-
 
NC_010717  PXO_06147  Putative signal protein with GGDEF, EAL and two component receiver domains  35.9 
 
 
549 aa  82.4  0.000000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  hitchhiker  0.0015374  n/a   
 
 
-
 
NC_008609  Ppro_2721  response regulator receiver protein  33.88 
 
 
188 aa  82.4  0.000000000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1662  response regulator  32.5 
 
 
475 aa  82  0.000000000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0711  response regulator  32.5 
 
 
518 aa  81.6  0.000000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.226782  n/a   
 
 
-
 
NC_009075  BURPS668_A2314  response regulator  32.5 
 
 
475 aa  82  0.000000000000003  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0599  response regulator  32.5 
 
 
475 aa  82  0.000000000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_1923  response regulator  32.5 
 
 
475 aa  82  0.000000000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  0.537818  n/a   
 
 
-
 
NC_008784  BMASAVP1_1716  response regulator  32.5 
 
 
475 aa  82  0.000000000000003  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_2289  response regulator receiver protein  37.01 
 
 
135 aa  80.5  0.000000000000008  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_3476  response regulator receiver modulated metal dependent phosphohydrolase  31.15 
 
 
479 aa  79.7  0.00000000000001  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_014248  Aazo_2338  GAF sensor-containing adenylate/guanylate cyclase  37.07 
 
 
1180 aa  79  0.00000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.0263037  n/a   
 
 
-
 
NC_007760  Adeh_3472  response regulator receiver sensor signal transduction histidine kinase  34.56 
 
 
520 aa  79.3  0.00000000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009457  VC0395_A0606  response regulator  32.56 
 
 
447 aa  79  0.00000000000002  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1570  response regulator receiver protein  32.76 
 
 
210 aa  79.3  0.00000000000002  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_010571  Oter_0999  response regulator receiver modulated serine phosphatase  41.67 
 
 
602 aa  78.6  0.00000000000003  Opitutus terrae PB90-1  Bacteria  normal  0.118416  hitchhiker  0.00369461 
 
 
-
 
NC_008609  Ppro_2723  putative PAS/PAC sensor protein  35.07 
 
 
285 aa  78.6  0.00000000000003  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2689  response regulator  34.31 
 
 
481 aa  77.8  0.00000000000004  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2388  response regulator  34.31 
 
 
481 aa  77.8  0.00000000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_0757  response regulator/HD domain-containing protein  34.31 
 
 
481 aa  77.8  0.00000000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0923  response regulator  34.31 
 
 
481 aa  77.8  0.00000000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_3971  putative GAF sensor protein  35.54 
 
 
312 aa  78.2  0.00000000000004  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_009080  BMA10247_2469  response regulator  34.31 
 
 
481 aa  77.8  0.00000000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  0.129941  n/a   
 
 
-
 
NC_004347  SO_2539  response regulator  34.71 
 
 
658 aa  77.8  0.00000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007298  Daro_0970  response regulator receiver  30.3 
 
 
438 aa  77.4  0.00000000000006  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_4550  response regulator receiver domain-containing protein  39.6 
 
 
451 aa  77.4  0.00000000000006  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.01769  normal 
 
 
-
 
NC_007651  BTH_I0615  response regulator  30.83 
 
 
484 aa  77.4  0.00000000000006  Burkholderia thailandensis E264  Bacteria  normal  0.177724  n/a   
 
 
-
 
NC_009074  BURPS668_0745  response regulator/HD domain-containing protein  34.31 
 
 
481 aa  77.4  0.00000000000006  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1569  response regulator receiver modulated metal dependent phosphohydrolase  31.97 
 
 
452 aa  77  0.00000000000007  Geobacter lovleyi SZ  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA0261  response regulator  33.33 
 
 
439 aa  76.6  0.00000000000009  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_0966  type II secretion system protein E  31.36 
 
 
746 aa  76.6  0.0000000000001  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.783688 
 
 
-
 
NC_007413  Ava_0662  response regulator receiver (CheY) and GAF modulated Serine phosphatase  33.33 
 
 
557 aa  76.3  0.0000000000001  Anabaena variabilis ATCC 29413  Bacteria  hitchhiker  0.00161844  normal  0.0426655 
 
 
-
 
NC_007912  Sde_3805  response regulator receiver domain-containing protein  28.47 
 
 
439 aa  76.3  0.0000000000001  Saccharophagus degradans 2-40  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2942  response regulator  34.09 
 
 
456 aa  75.9  0.0000000000002  Pseudomonas putida KT2440  Bacteria  normal  0.714666  normal  0.271158 
 
 
-
 
NC_007517  Gmet_3477  PAS/PAC sensor hybrid histidine kinase  32.26 
 
 
1465 aa  75.5  0.0000000000002  Geobacter metallireducens GS-15  Bacteria  normal  normal 
 
 
-
 
NC_011138  MADE_03496  response regulator  33.62 
 
 
434 aa  75.1  0.0000000000003  Alteromonas macleodii 'Deep ecotype'  Bacteria  normal  n/a   
 
 
-
 
NC_008392  Bamb_6276  response regulator receiver modulated metal dependent phosphohydrolase  29.57 
 
 
469 aa  75.1  0.0000000000003  Burkholderia ambifaria AMMD  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_5980  response regulator receiver modulated metal dependent phosphohydrolase  29.57 
 
 
469 aa  75.1  0.0000000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_011146  Gbem_0885  response regulator receiver modulated metal dependent phosphohydrolase  30.25 
 
 
324 aa  74.7  0.0000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_2745  response regulator receiver protein  36.21 
 
 
456 aa  74.7  0.0000000000004  Pseudomonas putida F1  Bacteria  normal  0.862781  normal 
 
 
-
 
NC_007413  Ava_1423  response regulator receiver (CheY) and GAF domain-containing protein  33.61 
 
 
315 aa  74.3  0.0000000000005  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_3375  response regulator receiver modulated metal dependent phosphohydrolase  29.41 
 
 
324 aa  74.3  0.0000000000005  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_007509  Bcep18194_C7223  response regulator receiver modulated metal dependent phosphohydrolase  28.7 
 
 
473 aa  74.3  0.0000000000006  Burkholderia sp. 383  Bacteria  normal  0.58817  normal  0.218696 
 
 
-
 
NC_003910  CPS_3245  sigma 54-dependent DNA-binding response regulator  36.7 
 
 
488 aa  73.9  0.0000000000007  Colwellia psychrerythraea 34H  Bacteria  normal  0.482559  n/a   
 
 
-
 
NC_009457  VC0395_A0605  response regulator  39.05 
 
 
536 aa  73.9  0.0000000000007  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_26830  putative two-component response regulator  33.05 
 
 
303 aa  73.9  0.0000000000007  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal 
 
 
-
 
NC_009943  Dole_3257  response regulator receiver modulated metal dependent phosphohydrolase  35.64 
 
 
358 aa  73.6  0.0000000000009  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU2094  response regulator  31.67 
 
 
329 aa  73.6  0.000000000001  Geobacter sulfurreducens PCA  Bacteria  normal  n/a   
 
 
-
 
NC_009656  PSPA7_2273  putative two-component response regulator  33.9 
 
 
304 aa  73.2  0.000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  0.438912  n/a   
 
 
-
 
NC_007204  Psyc_0720  response regulator receiver, fis type  28.36 
 
 
312 aa  73.6  0.000000000001  Psychrobacter arcticus 273-4  Bacteria  normal  0.935409  normal 
 
 
-
 
NC_008740  Maqu_0874  two component, sigma54 specific, Fis family transcriptional regulator  33.86 
 
 
464 aa  73.2  0.000000000001  Marinobacter aquaeolei VT8  Bacteria  normal  0.593832  n/a   
 
 
-
 
NC_013440  Hoch_0050  two component, sigma54 specific, transcriptional regulator, Fis family  31.75 
 
 
515 aa  73.2  0.000000000001  Haliangium ochraceum DSM 14365  Bacteria  normal  normal  0.0532507 
 
 
-
 
NC_014248  Aazo_4317  response regulator receiver modulated GAF sensor protein  33.61 
 
 
317 aa  72.8  0.000000000002  'Nostoc azollae' 0708  Bacteria  normal  0.248315  n/a   
 
 
-
 
NC_010512  Bcenmc03_6441  response regulator receiver modulated metal dependent phosphohydrolase  28.71 
 
 
470 aa  72.4  0.000000000002  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0692  response regulator receiver domain-containing protein  32.86 
 
 
390 aa  72.4  0.000000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1766  response regulator receiver domain-containing protein  29.1 
 
 
311 aa  72.8  0.000000000002  Psychrobacter cryohalolentis K5  Bacteria  normal  normal  0.143421 
 
 
-
 
NC_008228  Patl_1534  response regulator receiver protein  30.83 
 
 
439 aa  72.4  0.000000000002  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_008255  CHU_2793  two-component response regulator  32.09 
 
 
154 aa  72  0.000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.0292911 
 
 
-
 
NC_013093  Amir_2368  putative signal transduction protein  36.75 
 
 
403 aa  72  0.000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  0.374822  n/a   
 
 
-
 
NC_009943  Dole_2401  two component, sigma54 specific, Fis family transcriptional regulator  34.43 
 
 
449 aa  71.6  0.000000000003  Desulfococcus oleovorans Hxd3  Bacteria  normal  n/a   
 
 
-
 
NC_008312  Tery_4817  response regulator receiver modulated serine phosphatase with GAF sensor  31.67 
 
 
553 aa  72  0.000000000003  Trichodesmium erythraeum IMS101  Bacteria  normal  normal 
 
 
-
 
NC_007413  Ava_2239  adenylate/guanylate cyclase  33.62 
 
 
1156 aa  71.2  0.000000000004  Anabaena variabilis ATCC 29413  Bacteria  normal  0.159061  normal 
 
 
-
 
NC_011146  Gbem_0639  response regulator receiver modulated metal dependent phosphohydrolase  30.25 
 
 
345 aa  71.2  0.000000000004  Geobacter bemidjiensis Bem  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_2392  response regulator receiver sensor signal transduction histidine kinase  29.75 
 
 
363 aa  71.6  0.000000000004  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A0691  signal transduction protein  33.96 
 
 
388 aa  71.2  0.000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_008062  Bcen_5575  response regulator receiver modulated metal dependent phosphohydrolase  26.96 
 
 
472 aa  70.9  0.000000000006  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008544  Bcen2424_5939  response regulator receiver modulated metal dependent phosphohydrolase  26.96 
 
 
472 aa  70.9  0.000000000006  Burkholderia cenocepacia HI2424  Bacteria  normal  normal  0.862183 
 
 
-
 
NC_013037  Dfer_1110  adenylate/guanylate cyclase  37.96 
 
 
348 aa  70.5  0.000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0224811  normal  0.236606 
 
 
-
 
NC_011831  Cagg_0862  response regulator receiver protein  32.5 
 
 
293 aa  70.5  0.000000000007  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.747276  normal  0.358 
 
 
-
 
NC_008321  Shewmr4_2685  two component, sigma54 specific, Fis family transcriptional regulator  32.79 
 
 
425 aa  70.5  0.000000000008  Shewanella sp. MR-4  Bacteria  normal  0.501083  normal  0.0990314 
 
 
-
 
NC_002939  GSU0598  sigma-54 dependent DNA-binding response regulator  32.37 
 
 
470 aa  70.1  0.000000000009  Geobacter sulfurreducens PCA  Bacteria  normal  0.885444  n/a   
 
 
-
 
NC_010803  Clim_1287  two component, sigma54 specific, transcriptional regulator, Fis family  37.74 
 
 
452 aa  69.7  0.00000000001  Chlorobium limicola DSM 245  Bacteria  normal  0.541874  n/a   
 
 
-
 
NC_008312  Tery_3395  response regulator receiver protein  30.33 
 
 
132 aa  69.7  0.00000000001  Trichodesmium erythraeum IMS101  Bacteria  normal  0.306635  normal  0.186564 
 
 
-
 
NC_008322  Shewmr7_2753  two component, sigma54 specific, Fis family transcriptional regulator  32.79 
 
 
425 aa  70.1  0.00000000001  Shewanella sp. MR-7  Bacteria  decreased coverage  0.00792223  normal 
 
 
-
 
NC_008340  Mlg_2012  two component, sigma54 specific, Fis family transcriptional regulator  33.06 
 
 
484 aa  69.7  0.00000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  normal 
 
 
-
 
NC_012918  GM21_0653  response regulator receiver modulated metal dependent phosphohydrolase  30.25 
 
 
345 aa  69.3  0.00000000002  Geobacter sp. M21  Bacteria  n/a    hitchhiker  2.6785900000000002e-24 
 
 
-
 
NC_008312  Tery_0615  response regulator receiver sensor signal transduction histidine kinase  37.5 
 
 
395 aa  68.9  0.00000000002  Trichodesmium erythraeum IMS101  Bacteria  normal  hitchhiker  0.00858549 
 
 
-
 
NC_013132  Cpin_1315  response regulator receiver sensor signal transduction histidine kinase  31.67 
 
 
365 aa  68.9  0.00000000002  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_008390  Bamb_1597  response regulator receiver modulated diguanylate cyclase/phosphodiesterase  30.58 
 
 
860 aa  69.3  0.00000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.711633  n/a   
 
 
-
 
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