| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ppha_1021 |
|---|
| Symbol | |
|---|
| ID | 6461239 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pelodictyon phaeoclathratiforme BU-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_011060 |
|---|
| Strand | - |
|---|
| Start bp | 1056593 |
|---|
| End bp | 1058287 |
|---|
| Gene Length | 1695 bp |
|---|
| Protein Length | 564 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 642727272 |
|---|
| Product | putative PAS/PAC sensor protein |
|---|
| Protein accession | YP_002017922 |
|---|
| Protein GI | 194336128 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACC TCTCTGAAAT TGCGATCCTC TTTGTGGATG ATGAGCAAGA TACACTTGGT
TCGTTAAGCC GTTTTTTGCG TAAAGAGCCG TACATAAAAC ACTTTACAAC AAGTGGAAAA
GAGGCTCTTC AACTGCTCGA AACTCATGAC ATTCAAATTC TGTTAACTGA TTTGCGCATG
CCGGAAATGT CTGGCATGGA ACTCATCAAT CGGATAAAAA TAAGCCATCC GGACATAGTT
CGTGTTATTC TGAGCGGCAT CCATGATATC GATCAGATTA TTGAGTCCAT CAATACTGGT
GAAGTCTTCC GTTTTATTCC GAAGCCTATT GAGCCACAGG GATTTAAAAA AATCATAACC
GATGCGATTG ATTATTATCA ACTGAAAACT GAGCGGGAGA TGCTGTTCGA TCAGCTTGAG
ACGAAAAACA AGGAGTTGTC GAAAGCCAAT GATGCGCGTT GCGTCATGTC GGCAGAATTA
CGACAGAGTG AGGCACAATT CCGGACAATG AACGACTCCG CATTTGACCC CATCTTTCTC
CTCAATGAAC AAGGATTTAT CGTTTATGTC AATCTTGCCG CTGAGACTAT TTTCGGAATA
ACCGAGCGAG CATTCCATCT GAAAAAATTT ACAGACATTA TCTCGCCACA ACCCGACTCC
TGCTCCCTTT ATAATGCCTG TAAAAAACCC TTCCAGAATC TTGCATCGCT CAGAAATGGT
AATGTGCGAC AAATAGAAGG CATCAAAAAA GATGGTGGTA CCATTCCTCT TGAGGTCACA
ACAGGAACCG TCATGCTTGA CTCCGTTCAC CATACCGTCA TTATCGCACG AGATATCTCT
TCCCGAATTG AGGAAGAGAA AAGCCGGGTA CGTTATGAGC ACATGCAGCA AGAACTTGAG
GCACAAATTG AACAGAAACT GCTGCAAAGT ACCATCCCCA ATTCTCTTGA TGGAGCTTTG
ATGGGTCAGT TTACGGTCTC TTCAGGTCAT CTTAACGGCG ACTTTGCAGA GTTTATTCTT
TATGACAACA AACATGCTGA TATCATCATT GGCGATGTCA TGGGACATGG CATCCTTTCG
GCTCTGGTCG GTGCGGGATT AAAAACGCTT TTTCTGAAAA CAGTTGCTCA ACAAAAACAT
CAGCGCCATA AACTTCCTGA ATTGCAGGAC ATTGTTACTA ACGTGCATAA ACAGTGTATT
CTTGAGCTTC TTGAGATCGG CATTTATGCA ACGCTGCTCT TTATACGCCT TGATCTGGAA
AATATGGAGT TTTCCATGAT TGACTGCGGT CACACACCCT CCATTCATTT TCATGCTGAT
GAGGGCGTCT GCACACTGCT CAAGGGAGAA AACCTGCCAG TCGGCATGAT TGAAAAGCAA
GAGTACCAGA CAATTACTTT CCCGCTCGAG CAAGACGACA TTCTTGTGAT GTACTCCGAT
GGCATTACAG AGAGCCTCTT GCCAGACAAT ACGTTATTCG GCACCGAAAG ACTGAGCGAT
CTGATTGCAC AGTATCACAA ACTGCAGCCT GAGGCATTGG TCGAAAAAAT CAGTAACCAT
GTTTTTGAGC TTACCGGCAG ACGAACCTTC GATGATGATG CAACCTGCAT TGTTATCCGC
ATCGGATCCC TTAAATCCTC GATGAAATTT GCTCCTGATG AGCGCAAGAT TGAAAGCGGG
ACACTTGTCG GTTGA
|
|---|
| Protein sequence | MKDLSEIAIL FVDDEQDTLG SLSRFLRKEP YIKHFTTSGK EALQLLETHD IQILLTDLRM
PEMSGMELIN RIKISHPDIV RVILSGIHDI DQIIESINTG EVFRFIPKPI EPQGFKKIIT
DAIDYYQLKT EREMLFDQLE TKNKELSKAN DARCVMSAEL RQSEAQFRTM NDSAFDPIFL
LNEQGFIVYV NLAAETIFGI TERAFHLKKF TDIISPQPDS CSLYNACKKP FQNLASLRNG
NVRQIEGIKK DGGTIPLEVT TGTVMLDSVH HTVIIARDIS SRIEEEKSRV RYEHMQQELE
AQIEQKLLQS TIPNSLDGAL MGQFTVSSGH LNGDFAEFIL YDNKHADIII GDVMGHGILS
ALVGAGLKTL FLKTVAQQKH QRHKLPELQD IVTNVHKQCI LELLEIGIYA TLLFIRLDLE
NMEFSMIDCG HTPSIHFHAD EGVCTLLKGE NLPVGMIEKQ EYQTITFPLE QDDILVMYSD
GITESLLPDN TLFGTERLSD LIAQYHKLQP EALVEKISNH VFELTGRRTF DDDATCIVIR
IGSLKSSMKF APDERKIESG TLVG
|
|---|
| |