Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Clim_1832 |
Symbol | |
ID | 6355173 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Chlorobium limicola DSM 245 |
Kingdom | Bacteria |
Replicon accession | NC_010803 |
Strand | + |
Start bp | 2009347 |
End bp | 2010978 |
Gene Length | 1632 bp |
Protein Length | 543 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 642669436 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_001943850 |
Protein GI | 189347321 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAACC ATAAAGACCT CACCATACTT TTTGTCGATG ACGAACCCGA CATTCTCAGT TCGCTGAACC GTTTTTTGAG AAGAGAACCA TACAAAAAGC TCTTTGCGGA AAACGGTAGA AAAGCTCTCG AAATCTTTGA CTCGGTTACC GTCGATATTA TCATTTCCGA TCTGCGCATG CCCGAAATGA ACGGACTCGA ACTGATCAAT GAAGTAAAAA AAAGAAGACC GGAGAGCGTC CGGATGATTC TCAGCGGTTC GCAGGATATT GACCAGATCA TTGAATCCAT CAATACCGGA GAGGTATTCC GCTTTATTCC CAAACCCGTA GAGCCCGGAG CATTCAAAAA AATCCTCAAC GACGCTATTG ACTATTACTG CCTGAAAAAC GAACGGGAAG AGCTGTTCAA GGAGCTCTCC ATAAAAAATC AGGAGCTCAC AAAAGCGAAC GACGCGCTGA AAATCCTCAC CGGAGAACTC GAAAGAAGCG AAGAACAATT CCGTTCGATG AACGACGCGG CACATGATGC TGTCTTCATG CTCAATCAGG AAGGCGCCAT CATTTACCGC AATGCAGCGG CCGAAACCAT TTTTGGTTTC AACCGCAATC AGTATCCGAA TCAGCCGTTT GACGAGCTGC TTGCGAACGA AACGACGCAG ATCGACCTGA AGCGGTTCTG CAAAAACCCT TCTGAAAAAA ATGCGGACAA AGTCATTCAG ATCGAAGGTC TAAAAATAAA CGGAACGACC CTGCCGATTG AAATATCTAA AGGATGCGTC CATATCGACT CCCTGCCGCA CACCGTAGTC ATAGCCCGCG ACATCACCTC CCGCGTTGAA GAAGAACGCA GCCGACAGCG ATACACAAAT CTGCAGAGAG ATCTCGAGTC GCAGATTGAA AAAAAACTCC TTCAGAGTCC GGTACCGGAG TCGCTCCAGG GAGCATCGCT AAGCCGACTC ATGCTGCCAT CCGGTCATCT CGATGGTGAT TTCATCGACT TTATCGTCTA TGACCGCAGT CACATAGACA TTCTCATCGG TGACGTCATG GGACACGGCA TTCAATCGGC GCTGGTTGGA GCGGGAATAA AATCACTTTT TCTGAAAGTA CTTGCAGAAC AGCAATCCGA CACAGGAGAG TTACCCTCCC TTCAGGATAT CCTGACTGCA GTTCATGATC GCTGCATCCA CGAACTGATC GAACTCGGAA CCTACACGAC ACTGCTCTTC ATACGGCTGG ACCTGTCAAA CCGGAAATTC TCGATCGTTG ACTGCGGACA CACCCCTGCC ATACACTTTC ACTCCCGAAC CGGAACCGTC AGGCAGCTCA AAGGAGAAAA TCTTCCGATC GGCATGATAG AACAGCAGCA GTACTCCGAA AGCACCTATC CCATTGAAGA AAACGATATC CTTGTCCTCT ATTCGGACGG AATAACGGAA AGCCGCTCCC CCAACGCAAC CATGTTCGGC ATAGACCGGC TTGCAGAAAT CATAAAAAAG CACCATGAAC TGCCTGCGGA CAATCTGGTC AGTACCATCA GAACATTGTT ATCGGACTTT TCAGGCAGAG CAACCTTTGA CGACGACGTC ACCTGTCTGG TAATCAGGAT CGAACAGACC AGCAGACGAT AA
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Protein sequence | MKNHKDLTIL FVDDEPDILS SLNRFLRREP YKKLFAENGR KALEIFDSVT VDIIISDLRM PEMNGLELIN EVKKRRPESV RMILSGSQDI DQIIESINTG EVFRFIPKPV EPGAFKKILN DAIDYYCLKN EREELFKELS IKNQELTKAN DALKILTGEL ERSEEQFRSM NDAAHDAVFM LNQEGAIIYR NAAAETIFGF NRNQYPNQPF DELLANETTQ IDLKRFCKNP SEKNADKVIQ IEGLKINGTT LPIEISKGCV HIDSLPHTVV IARDITSRVE EERSRQRYTN LQRDLESQIE KKLLQSPVPE SLQGASLSRL MLPSGHLDGD FIDFIVYDRS HIDILIGDVM GHGIQSALVG AGIKSLFLKV LAEQQSDTGE LPSLQDILTA VHDRCIHELI ELGTYTTLLF IRLDLSNRKF SIVDCGHTPA IHFHSRTGTV RQLKGENLPI GMIEQQQYSE STYPIEENDI LVLYSDGITE SRSPNATMFG IDRLAEIIKK HHELPADNLV STIRTLLSDF SGRATFDDDV TCLVIRIEQT SRR
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