Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PXO_01019 |
Symbol | |
ID | 6306053 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Xanthomonas oryzae pv. oryzae PXO99A |
Kingdom | Bacteria |
Replicon accession | NC_010717 |
Strand | + |
Start bp | 2587819 |
End bp | 2589468 |
Gene Length | 1650 bp |
Protein Length | 549 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642639816 |
Product | Putative signal protein with GGDEF, EAL and two component receiver domains |
Protein accession | YP_001913676 |
Protein GI | 188576747 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2200] FOG: EAL domain [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.159296 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGCTGCATT TAGTCGATGC GGCCGCGTCC GGCGGCCCGC CGCTGATGAT TTTCCACGTC GACATCGATC ACTTCGCCTC GATCAACGAG AACATGAGTG GCGAGGTCGG CGACCAGGCG CTGACATTGG CCGCGCGTCG CCTTCAGGAG TTTCTCGGAA CCCGCGGCAA ACTGTGGCGT CATGGCAGCG ATGAGATGAT CGTGGTGGCA GTGCGCCGGG AAGACACACC GCTGCCGGAA GACTTCGCCG AAGAAATCCG CCAGCAACTG GAATTGCCGC TGTCGGTGTT GCCGTACACG TTGTTCATGA CTGGCAAGGT CGGCATCAGC CTGTGCCCGG AGCATTCCAC CGCGGTGTCC ACGCTCCTGG ACTATGCCGA AGAAGCCAGC TACCAGGCGG CACGCGAAGG CGGCAACACG GTGCGGCTGT ACACCCGCAA CTCGGCCACC AACGCGCATA GCGAAAGCAT CATTGCGCGG CAGATCGTCG ATGCGATTCC GCACGGCGAA TTACGCCTGC GCTACCAACC GCTGGTGAGC GCGCGCGACG GCCGCATCGT TGGCATGGAG GCGCTGCTGC GCTGGCAGTC GCCGACCCTG GGCATGCTGG TACCGGAGCG CTTCATGCGC ACCGCCGAGC GCCTGGGCGT GATCGTGCAG ATCGGCGAAT GGGTACTGCA GAACGCGGTG CGTCAGGCGC GTTTATGGCG CGACCAGGGC TTCGATGACT TCAGCATTGC GATAAACGTC TCCACGCTGC AGCTGCTGCG CCCGGGCTTC TTCAACGAAG TGATGGCGAT GCTGCAGACC GCCGGTGTGC CGGCGCAGTT CGTCACGCTG GAGATCAACG AAAGCGCGTT GACCAACAAC GTCAACTTCG TCCACGAGAC GATGGCCAAC CTGCGCAACG AAGGCATCAG CCTGAGCCTG GATAACTTCG GCACCGGCGA TTCCAGTCTG AGCGCGCTGG TGCGCTACCC GGTGGACCGG CTGAAGATCG ACCGCAGTTT CATCAAAAGC GCACCTGCCG GCAGCCGCGA GGCGGCGATT GCGCGCGCCA TCATCGCCAT GGGTCACCAG CTCGGCATGA CGGTCATTGC CAACGGGGTG GAATCGCAGG CGCAATTGGG CTTCCTGCGT CGCAACGATT GCGACATCTT CCAGGGCTAT CTGTTCGGTG AACCGATGTC GGCCGAGTCG GCCGGCATGG CACTGCGGCG CCGCTACCTG CGCCCGGAAT CGTTCGCCGA AAGCCGCCCT GATCGCACCT TGCTGCTGCT GGACGACGAA GAGAACGTGC TGCGCTCGCT GGTGCGCCTG TTCCGTCGCG ATGGCTACCG GATTCTGGCC GCCGGCAACG TGCGCGACGC CTTCGACCTG CTCGCCACCA ACGACGTGCA GGTGATCCTT TCCGATCAGC GCATGAGCGA CATGAGCGGC ACCGAGTTCC TGGGCCGGGT CAAGATGCTC TACCCCGATA CGGTGCGCCT GGTGCTCTCC GGCTACACGG ACCTGGCCAC GGTCACCGAA GCCATCAACC GTGGCGCGAT CTACCGCTTC CTGACCAAAC CCTGGAACGA CGACGAACTG CGCGAGCATA TTCGTCAGGC CTTCCGCACG CATGACGAGT TGCGGAACGG CCGGGAATAG
|
Protein sequence | MLHLVDAAAS GGPPLMIFHV DIDHFASINE NMSGEVGDQA LTLAARRLQE FLGTRGKLWR HGSDEMIVVA VRREDTPLPE DFAEEIRQQL ELPLSVLPYT LFMTGKVGIS LCPEHSTAVS TLLDYAEEAS YQAAREGGNT VRLYTRNSAT NAHSESIIAR QIVDAIPHGE LRLRYQPLVS ARDGRIVGME ALLRWQSPTL GMLVPERFMR TAERLGVIVQ IGEWVLQNAV RQARLWRDQG FDDFSIAINV STLQLLRPGF FNEVMAMLQT AGVPAQFVTL EINESALTNN VNFVHETMAN LRNEGISLSL DNFGTGDSSL SALVRYPVDR LKIDRSFIKS APAGSREAAI ARAIIAMGHQ LGMTVIANGV ESQAQLGFLR RNDCDIFQGY LFGEPMSAES AGMALRRRYL RPESFAESRP DRTLLLLDDE ENVLRSLVRL FRRDGYRILA AGNVRDAFDL LATNDVQVIL SDQRMSDMSG TEFLGRVKML YPDTVRLVLS GYTDLATVTE AINRGAIYRF LTKPWNDDEL REHIRQAFRT HDELRNGRE
|
| |