More than 300 homologs were found in PanDaTox collection
for query gene Pden_4361 on replicon NC_008687
Organism: Paracoccus denitrificans PD1222



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008687  Pden_4361  binding-protein-dependent transport systems inner membrane component  100 
 
 
514 aa  960    Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009959  Dshi_4163  binding-protein-dependent transport systems inner membrane component  66.4 
 
 
525 aa  583  1.0000000000000001e-165  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.4344  normal  0.880748 
 
 
-
 
NC_007802  Jann_0308  binding-protein-dependent transport systems inner membrane component  61.9 
 
 
511 aa  559  1e-158  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3665  binding-protein-dependent transport systems inner membrane component  57.34 
 
 
507 aa  457  1e-127  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.701214  normal  0.0728471 
 
 
-
 
NC_009668  Oant_2977  binding-protein-dependent transport systems inner membrane component  35.92 
 
 
523 aa  206  1e-51  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.467356  n/a   
 
 
-
 
NC_009921  Franean1_5688  binding-protein-dependent transport systems inner membrane component  38.25 
 
 
284 aa  155  2e-36  Frankia sp. EAN1pec  Bacteria  normal  0.748678  normal 
 
 
-
 
NC_008541  Arth_0030  binding-protein-dependent transport systems inner membrane component  33.78 
 
 
273 aa  131  2.0000000000000002e-29  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1305  binding-protein-dependent transport systems inner membrane component  37.92 
 
 
286 aa  130  6e-29  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.527409  normal  0.263376 
 
 
-
 
NC_014151  Cfla_2798  binding-protein-dependent transport systems inner membrane component  35.22 
 
 
288 aa  118  3e-25  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.706762  hitchhiker  0.0028911 
 
 
-
 
NC_009921  Franean1_5689  binding-protein-dependent transport systems inner membrane component  40 
 
 
254 aa  117  6.9999999999999995e-25  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_2797  binding-protein-dependent transport systems inner membrane component  39.08 
 
 
286 aa  112  2.0000000000000002e-23  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.720808  hitchhiker  0.00295081 
 
 
-
 
NC_008541  Arth_0029  binding-protein-dependent transport systems inner membrane component  35.56 
 
 
280 aa  110  5e-23  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_1304  binding-protein-dependent transport systems inner membrane component  42.63 
 
 
279 aa  108  2e-22  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.6164  normal  0.483465 
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  27.38 
 
 
266 aa  106  8e-22  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  29.41 
 
 
277 aa  101  4e-20  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  29.11 
 
 
266 aa  101  4e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  32.07 
 
 
282 aa  100  4e-20  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  33.48 
 
 
253 aa  100  5e-20  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_013743  Htur_0669  binding-protein-dependent transport systems inner membrane component  34.55 
 
 
258 aa  100  8e-20  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  31.63 
 
 
266 aa  99.8  1e-19  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  31.2 
 
 
267 aa  99.4  2e-19  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  32.23 
 
 
243 aa  98.2  3e-19  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  31.45 
 
 
250 aa  97.1  7e-19  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  27.69 
 
 
265 aa  97.1  8e-19  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  30.74 
 
 
288 aa  96.3  1e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  28.88 
 
 
258 aa  96.3  1e-18  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_013421  Pecwa_1832  binding-protein-dependent transport systems inner membrane component  26.88 
 
 
533 aa  95.5  2e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  30.26 
 
 
306 aa  92.4  2e-17  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  32 
 
 
255 aa  92.4  2e-17  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013093  Amir_4889  binding-protein-dependent transport systems inner membrane component  29.84 
 
 
258 aa  92  2e-17  Actinosynnema mirum DSM 43827  Bacteria  normal  0.90454  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  29.76 
 
 
257 aa  91.3  4e-17  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_011757  Mchl_2050  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
321 aa  90.9  6e-17  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.577348 
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  27.56 
 
 
258 aa  90.5  6e-17  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_3460  ABC transporter membrane spanning protein  30.58 
 
 
288 aa  90.1  8e-17  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  31.11 
 
 
261 aa  90.1  8e-17  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  31.91 
 
 
281 aa  90.1  9e-17  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  24.54 
 
 
257 aa  89.7  1e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  30.32 
 
 
268 aa  89.4  1e-16  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  22.9 
 
 
256 aa  89.4  1e-16  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0877  binding-protein-dependent transport systems inner membrane component  27.05 
 
 
260 aa  89  2e-16  Desulfitobacterium hafniense DCB-2  Bacteria  decreased coverage  0.00000000112184  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  23.94 
 
 
265 aa  89  2e-16  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  23.94 
 
 
257 aa  88.6  2e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  28.63 
 
 
256 aa  89.4  2e-16  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_008254  Meso_0814  binding-protein-dependent transport systems inner membrane component  28.57 
 
 
270 aa  89  2e-16  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  23.94 
 
 
257 aa  88.6  2e-16  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  28.94 
 
 
249 aa  89  2e-16  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1731  binding-protein-dependent transport systems inner membrane component  34.64 
 
 
321 aa  89.4  2e-16  Methylobacterium extorquens PA1  Bacteria  normal  0.443029  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  33.16 
 
 
258 aa  88.6  3e-16  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  23.94 
 
 
265 aa  88.6  3e-16  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  23.94 
 
 
265 aa  88.6  3e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  24.07 
 
 
257 aa  88.2  3e-16  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_011313  VSAL_II0488  putative binding protein-dependent transport system, membrane component  33.67 
 
 
272 aa  88.2  3e-16  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.970837  n/a   
 
 
-
 
NC_012669  Bcav_0452  binding-protein-dependent transport systems inner membrane component  35.8 
 
 
252 aa  88.2  3e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal  0.0467336 
 
 
-
 
NC_012917  PC1_1432  binding-protein-dependent transport systems inner membrane component  27.78 
 
 
537 aa  88.6  3e-16  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.300396  n/a   
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  29.56 
 
 
322 aa  88.6  3e-16  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  24.3 
 
 
255 aa  88.2  3e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_002620  TC0243  ABC transporter, permease protein, putative  33.09 
 
 
587 aa  87.4  5e-16  Chlamydia muridarum Nigg  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  26.34 
 
 
251 aa  87.4  5e-16  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  23.83 
 
 
255 aa  87.4  6e-16  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_4254  binding-protein-dependent transport systems inner membrane component  27.91 
 
 
283 aa  87  7e-16  Conexibacter woesei DSM 14684  Bacteria  normal  0.0441349  normal  0.902161 
 
 
-
 
NC_012669  Bcav_2574  binding-protein-dependent transport systems inner membrane component  35.29 
 
 
252 aa  87  8e-16  Beutenbergia cavernae DSM 12333  Bacteria  normal  normal 
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  24.81 
 
 
265 aa  86.7  8e-16  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  28.4 
 
 
258 aa  87  8e-16  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2621  binding-protein-dependent transport systems inner membrane component  29.83 
 
 
281 aa  86.3  0.000000000000001  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.00000218671  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  28.96 
 
 
279 aa  86.7  0.000000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_009636  Smed_2372  binding-protein-dependent transport systems inner membrane component  29.95 
 
 
289 aa  85.9  0.000000000000002  Sinorhizobium medicae WSM419  Bacteria  normal  normal  0.239724 
 
 
-
 
NC_009428  Rsph17025_0588  binding-protein-dependent transport systems inner membrane component  29.74 
 
 
238 aa  85.5  0.000000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.98825  normal 
 
 
-
 
NC_011368  Rleg2_5341  binding-protein-dependent transport systems inner membrane component  26.64 
 
 
293 aa  85.5  0.000000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal  0.7364 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  31.82 
 
 
256 aa  85.1  0.000000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  35.14 
 
 
281 aa  84.7  0.000000000000003  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
255 aa  84.3  0.000000000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_008043  TM1040_3658  binding-protein-dependent transport systems inner membrane component  30.99 
 
 
245 aa  84.3  0.000000000000004  Ruegeria sp. TM1040  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  24.49 
 
 
259 aa  84.7  0.000000000000004  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_010725  Mpop_1083  binding-protein-dependent transport systems inner membrane component  33.98 
 
 
321 aa  84  0.000000000000005  Methylobacterium populi BJ001  Bacteria  normal  0.148611  normal  0.032179 
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  23.15 
 
 
257 aa  84  0.000000000000005  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_2642  binding-protein-dependent transport systems inner membrane component  26.34 
 
 
528 aa  84  0.000000000000007  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  26.58 
 
 
249 aa  83.6  0.000000000000008  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009921  Franean1_4522  binding-protein-dependent transport systems inner membrane component  27.03 
 
 
329 aa  83.2  0.00000000000001  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  30.41 
 
 
308 aa  83.2  0.00000000000001  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_012848  Rleg_5061  binding-protein-dependent transport systems inner membrane component  25.77 
 
 
293 aa  82.4  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.877762  normal  0.739003 
 
 
-
 
NC_008044  TM1040_1494  binding-protein-dependent transport systems inner membrane component  32.5 
 
 
281 aa  82  0.00000000000002  Ruegeria sp. TM1040  Bacteria  normal  0.58323  normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  30.49 
 
 
271 aa  82.4  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_014213  Mesil_3278  ABC transporter related protein  29.91 
 
 
257 aa  81.6  0.00000000000003  Meiothermus silvanus DSM 9946  Bacteria  hitchhiker  0.000407876  normal  0.0335836 
 
 
-
 
NC_011899  Hore_11490  binding-protein-dependent transport systems inner membrane component  22 
 
 
278 aa  82  0.00000000000003  Halothermothrix orenii H 168  Bacteria  hitchhiker  0.000000000965537  n/a   
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  28.38 
 
 
274 aa  81.6  0.00000000000003  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009719  Plav_0891  binding-protein-dependent transport systems inner membrane component  26.69 
 
 
268 aa  81.6  0.00000000000003  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal  0.223421 
 
 
-
 
NC_012850  Rleg_3297  binding-protein-dependent transport systems inner membrane component  28.64 
 
 
375 aa  81.3  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.149558 
 
 
-
 
NC_011369  Rleg2_3042  binding-protein-dependent transport systems inner membrane component  28.05 
 
 
375 aa  81.3  0.00000000000004  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_3330  ABC transporter membrane spanning protein  26.05 
 
 
295 aa  81.3  0.00000000000004  Agrobacterium vitis S4  Bacteria  normal  0.730487  n/a   
 
 
-
 
NC_013421  Pecwa_4334  binding-protein-dependent transport systems inner membrane component  23.18 
 
 
536 aa  80.9  0.00000000000005  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_0644  ABC transporter, inner membrane subunit  31 
 
 
238 aa  80.9  0.00000000000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  27.69 
 
 
247 aa  80.1  0.00000000000008  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_013440  Hoch_2033  binding-protein-dependent transport systems inner membrane component  33.87 
 
 
275 aa  80.1  0.00000000000008  Haliangium ochraceum DSM 14365  Bacteria  normal  0.0253714  normal  0.258175 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  31.38 
 
 
303 aa  80.1  0.00000000000008  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_009667  Oant_0344  binding-protein-dependent transport systems inner membrane component  27.75 
 
 
286 aa  79.3  0.0000000000001  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.113814  n/a   
 
 
-
 
NC_009523  RoseRS_2763  binding-protein-dependent transport systems inner membrane component  30.05 
 
 
275 aa  79.7  0.0000000000001  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  26.97 
 
 
246 aa  79.7  0.0000000000001  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008254  Meso_2046  binding-protein-dependent transport systems inner membrane component  29.61 
 
 
286 aa  79.7  0.0000000000001  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2297  binding-protein-dependent transport systems inner membrane component  30.57 
 
 
238 aa  79.3  0.0000000000001  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0792355  normal  0.132671 
 
 
-
 
NC_013530  Xcel_0423  binding-protein-dependent transport systems inner membrane component  26.75 
 
 
297 aa  79.7  0.0000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  0.283538  n/a   
 
 
-
 
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