More than 300 homologs were found in PanDaTox collection
for query gene Dshi_4163 on replicon NC_009959
Organism: Dinoroseobacter shibae DFL 12



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007802  Jann_0308  binding-protein-dependent transport systems inner membrane component  72.3 
 
 
511 aa  643    Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009959  Dshi_4163  binding-protein-dependent transport systems inner membrane component  100 
 
 
525 aa  983    Dinoroseobacter shibae DFL 12  Bacteria  normal  0.4344  normal  0.880748 
 
 
-
 
NC_008687  Pden_4361  binding-protein-dependent transport systems inner membrane component  66.6 
 
 
514 aa  525  1e-147  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_009050  Rsph17029_3665  binding-protein-dependent transport systems inner membrane component  56.65 
 
 
507 aa  449  1e-125  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.701214  normal  0.0728471 
 
 
-
 
NC_009668  Oant_2977  binding-protein-dependent transport systems inner membrane component  35.2 
 
 
523 aa  200  3.9999999999999996e-50  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.467356  n/a   
 
 
-
 
NC_009921  Franean1_5688  binding-protein-dependent transport systems inner membrane component  38.98 
 
 
284 aa  154  2.9999999999999998e-36  Frankia sp. EAN1pec  Bacteria  normal  0.748678  normal 
 
 
-
 
NC_009921  Franean1_5689  binding-protein-dependent transport systems inner membrane component  45.05 
 
 
254 aa  140  4.999999999999999e-32  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_008541  Arth_0030  binding-protein-dependent transport systems inner membrane component  34.53 
 
 
273 aa  131  3e-29  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_2798  binding-protein-dependent transport systems inner membrane component  35.23 
 
 
288 aa  129  2.0000000000000002e-28  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.706762  hitchhiker  0.0028911 
 
 
-
 
NC_014151  Cfla_2797  binding-protein-dependent transport systems inner membrane component  39.24 
 
 
286 aa  124  6e-27  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.720808  hitchhiker  0.00295081 
 
 
-
 
NC_009664  Krad_1304  binding-protein-dependent transport systems inner membrane component  44.74 
 
 
279 aa  123  6e-27  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.6164  normal  0.483465 
 
 
-
 
NC_008541  Arth_0029  binding-protein-dependent transport systems inner membrane component  38.21 
 
 
280 aa  118  1.9999999999999998e-25  Arthrobacter sp. FB24  Bacteria  normal  n/a   
 
 
-
 
NC_013739  Cwoe_3810  binding-protein-dependent transport systems inner membrane component  29.32 
 
 
258 aa  113  9e-24  Conexibacter woesei DSM 14684  Bacteria  normal  normal  0.42897 
 
 
-
 
NC_009664  Krad_1305  binding-protein-dependent transport systems inner membrane component  33.9 
 
 
286 aa  111  4.0000000000000004e-23  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.527409  normal  0.263376 
 
 
-
 
NC_007802  Jann_3753  binding-protein-dependent transport systems inner membrane component  27.91 
 
 
268 aa  109  1e-22  Jannaschia sp. CCS1  Bacteria  normal  0.333865  normal 
 
 
-
 
NC_012792  Vapar_6052  binding-protein-dependent transport systems inner membrane component  32.09 
 
 
274 aa  108  3e-22  Variovorax paradoxus S110  Bacteria  normal  0.0454164  n/a   
 
 
-
 
NC_009485  BBta_1169  putative ABC transporter permease protein  34.89 
 
 
279 aa  104  5e-21  Bradyrhizobium sp. BTAi1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_3506  binding-protein-dependent transport systems inner membrane component  32.83 
 
 
282 aa  103  6e-21  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.0528385  normal  0.0939424 
 
 
-
 
NC_013739  Cwoe_2762  binding-protein-dependent transport systems inner membrane component  33.97 
 
 
250 aa  102  2e-20  Conexibacter woesei DSM 14684  Bacteria  normal  0.0247808  normal  0.0244453 
 
 
-
 
NC_008148  Rxyl_3035  binding-protein-dependent transport systems inner membrane component  30.2 
 
 
256 aa  99.4  1e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_0278  binding-protein-dependent transport systems inner membrane component  29.48 
 
 
258 aa  98.6  2e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_008148  Rxyl_3036  binding-protein-dependent transport systems inner membrane component  27.92 
 
 
266 aa  97.8  4e-19  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_1933  binding-protein-dependent transport systems inner membrane component  30.9 
 
 
255 aa  97.4  6e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.323499  n/a   
 
 
-
 
NC_009921  Franean1_3131  binding-protein-dependent transport systems inner membrane component  30.3 
 
 
281 aa  97.1  6e-19  Frankia sp. EAN1pec  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3099  binding-protein dependent transport system inner membrane protein  30.51 
 
 
261 aa  97.1  8e-19  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.578785 
 
 
-
 
NC_013093  Amir_2627  binding-protein-dependent transport systems inner membrane component  32.17 
 
 
288 aa  96.3  1e-18  Actinosynnema mirum DSM 43827  Bacteria  normal  0.752734  n/a   
 
 
-
 
NC_013203  Apar_0391  binding-protein-dependent transport systems inner membrane component  28.31 
 
 
257 aa  95.1  3e-18  Atopobium parvulum DSM 20469  Bacteria  normal  normal 
 
 
-
 
NC_004310  BR0211  ABC transporter, permease protein  29.88 
 
 
258 aa  94.7  4e-18  Brucella suis 1330  Bacteria  normal  n/a   
 
 
-
 
NC_014210  Ndas_4504  binding-protein-dependent transport systems inner membrane component  32.11 
 
 
281 aa  94.7  4e-18  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_009832  Spro_3124  binding-protein-dependent transport systems inner membrane component  29.68 
 
 
255 aa  93.6  7e-18  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_013521  Sked_02100  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  31.35 
 
 
308 aa  94  7e-18  Sanguibacter keddieii DSM 10542  Bacteria  normal  normal 
 
 
-
 
NC_009674  Bcer98_0370  binding-protein-dependent transport systems inner membrane component  25.21 
 
 
256 aa  93.2  1e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_008686  Pden_0033  binding-protein-dependent transport systems inner membrane component  29.18 
 
 
243 aa  93.2  1e-17  Paracoccus denitrificans PD1222  Bacteria  normal  normal 
 
 
-
 
NC_013515  Smon_0476  binding-protein-dependent transport systems inner membrane component  28.38 
 
 
249 aa  92.8  1e-17  Streptobacillus moniliformis DSM 12112  Bacteria  n/a    n/a   
 
 
-
 
NC_009253  Dred_1834  binding-protein-dependent transport systems inner membrane component  30.21 
 
 
268 aa  92.4  2e-17  Desulfotomaculum reducens MI-1  Bacteria  normal  0.101401  n/a   
 
 
-
 
NC_011725  BCB4264_A0784  putative ABC transporter, permease protein  29.21 
 
 
250 aa  92  2e-17  Bacillus cereus B4264  Bacteria  normal  0.605831  n/a   
 
 
-
 
NC_009505  BOV_0202  ABC transporter, permease protein  29.88 
 
 
258 aa  91.7  3e-17  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_003909  BCE_0797  ABC transporter, permease protein, putative  29.7 
 
 
250 aa  91.3  4e-17  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS0693  ABC transporter permease  28.71 
 
 
250 aa  90.9  5e-17  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK0637  ABC transporter, permease  28.71 
 
 
250 aa  90.9  5e-17  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_0727  ABC transporter permease  28.71 
 
 
250 aa  90.9  5e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.0363276  n/a   
 
 
-
 
NC_011365  Gdia_3269  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
253 aa  90.9  5e-17  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.283078  normal 
 
 
-
 
NC_005957  BT9727_0637  ABC transporter, permease  28.71 
 
 
250 aa  90.9  6e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.00537874  n/a   
 
 
-
 
NC_006274  BCZK0354  ABC transporter, permease  26.29 
 
 
265 aa  90.5  6e-17  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0804  putative ABC transporter, permease protein  28.71 
 
 
250 aa  90.5  6e-17  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  1.22036e-46 
 
 
-
 
NC_010623  Bphy_3181  binding-protein-dependent transport systems inner membrane component  29.79 
 
 
277 aa  90.5  7e-17  Burkholderia phymatum STM815  Bacteria  normal  0.0283642  normal 
 
 
-
 
NC_009952  Dshi_1373  binding-protein-dependent transport systems inner membrane component  31.58 
 
 
303 aa  90.5  7e-17  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.674946  normal  0.833857 
 
 
-
 
NC_011658  BCAH187_A0881  putative ABC transporter, permease protein  29.7 
 
 
251 aa  90.5  7e-17  Bacillus cereus AH187  Bacteria  hitchhiker  0.00328051  n/a   
 
 
-
 
NC_011725  BCB4264_A0446  putative ABC transporter, permease protein  26.14 
 
 
257 aa  90.1  8e-17  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0643  binding-protein-dependent transport systems inner membrane component  29.21 
 
 
251 aa  89.7  1e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_0362  binding-protein-dependent transport systems inner membrane component  26.14 
 
 
255 aa  89.4  1e-16  Bacillus weihenstephanensis KBAB4  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B4547  putative ABC transporter, permease protein  29.21 
 
 
251 aa  90.1  1e-16  Bacillus cereus G9842  Bacteria  normal  0.113137  normal  0.441246 
 
 
-
 
NC_013421  Pecwa_1832  binding-protein-dependent transport systems inner membrane component  24.69 
 
 
533 aa  89.7  1e-16  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_3205  binding-protein-dependent transport systems inner membrane component  27.59 
 
 
265 aa  89.7  1e-16  Desulfotomaculum reducens MI-1  Bacteria  hitchhiker  0.000457845  n/a   
 
 
-
 
NC_005945  BAS0367  ABC transporter permease  25.5 
 
 
265 aa  89.4  2e-16  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_005957  BT9727_0357  ABC transporter, permease  25.5 
 
 
265 aa  89.4  2e-16  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  n/a   
 
 
-
 
NC_011988  Avi_5406  ABC transporter membrane spanning protein  27.42 
 
 
251 aa  89  2e-16  Agrobacterium vitis S4  Bacteria  normal  0.408693  n/a   
 
 
-
 
NC_011772  BCG9842_B4878  putative ABC transporter, permease protein  26.14 
 
 
255 aa  89.4  2e-16  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_012852  Rleg_6281  binding-protein-dependent transport systems inner membrane component  28.26 
 
 
256 aa  89  2e-16  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.783663  normal 
 
 
-
 
NC_012791  Vapar_1862  binding-protein-dependent transport systems inner membrane component  27.75 
 
 
257 aa  89  2e-16  Variovorax paradoxus S110  Bacteria  normal  0.116723  n/a   
 
 
-
 
NC_003909  BCE_0491  ABC transporter, permease protein, putative  24.65 
 
 
257 aa  88.2  3e-16  Bacillus cereus ATCC 10987  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_0424  putative ABC transporter, permease protein  26.53 
 
 
257 aa  88.2  3e-16  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_007530  GBAA_0381  ABC transporter permease  26.53 
 
 
257 aa  88.2  3e-16  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011894  Mnod_2985  binding-protein-dependent transport systems inner membrane component  31.14 
 
 
273 aa  87.8  4e-16  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1221  binding-protein-dependent transport systems inner membrane component  28.33 
 
 
246 aa  87.8  4e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_008709  Ping_2376  ABC transporter substrate binding inner membrane protein  25.47 
 
 
265 aa  88.2  4e-16  Psychromonas ingrahamii 37  Bacteria  normal  normal 
 
 
-
 
NC_009524  PsycPRwf_1445  binding-protein-dependent transport systems inner membrane component  26.52 
 
 
259 aa  87.8  4e-16  Psychrobacter sp. PRwf-1  Bacteria  normal  normal  0.318112 
 
 
-
 
NC_009669  Oant_4580  binding-protein-dependent transport systems inner membrane component  33.5 
 
 
257 aa  87.4  6e-16  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_4887  binding-protein-dependent transport systems inner membrane component  33.08 
 
 
267 aa  87  7e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_011658  BCAH187_A0493  putative ABC transporter, permease protein  24.19 
 
 
257 aa  87  8e-16  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_013457  VEA_000865  hydroxymethylpyrimidine ABC transporter transmembrane component  26.99 
 
 
266 aa  86.3  0.000000000000001  Vibrio sp. Ex25  Bacteria  normal  n/a   
 
 
-
 
NC_009784  VIBHAR_06840  ABC-type nitrate/sulfonate/bicarbonate transport system permease component  30.05 
 
 
266 aa  86.3  0.000000000000001  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008786  Veis_0620  binding-protein-dependent transport systems inner membrane component  27.73 
 
 
254 aa  86.7  0.000000000000001  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.63161  normal 
 
 
-
 
NC_014212  Mesil_2099  binding-protein-dependent transport systems inner membrane component  29.73 
 
 
306 aa  85.9  0.000000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  normal 
 
 
-
 
NC_009486  Tpet_0435  binding-protein-dependent transport systems inner membrane component  26.32 
 
 
250 aa  85.5  0.000000000000002  Thermotoga petrophila RKU-1  Bacteria  normal  n/a   
 
 
-
 
NC_007778  RPB_3093  binding-protein dependent transport system inner membrane protein  35.68 
 
 
259 aa  85.5  0.000000000000002  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal  0.942666 
 
 
-
 
NC_010483  TRQ2_0450  binding-protein-dependent transport systems inner membrane component  26.32 
 
 
222 aa  85.9  0.000000000000002  Thermotoga sp. RQ2  Bacteria  normal  n/a   
 
 
-
 
NC_013165  Shel_13670  ABC-type nitrate/sulfonate/bicarbonate transport system, permease component  27.48 
 
 
249 aa  85.5  0.000000000000002  Slackia heliotrinireducens DSM 20476  Bacteria  normal  normal 
 
 
-
 
NC_013517  Sterm_2064  binding-protein-dependent transport systems inner membrane component  24.74 
 
 
254 aa  84.7  0.000000000000003  Sebaldella termitidis ATCC 33386  Bacteria  hitchhiker  0.00112586  n/a   
 
 
-
 
NC_010511  M446_0770  binding-protein-dependent transport systems inner membrane component  34.57 
 
 
273 aa  85.1  0.000000000000003  Methylobacterium sp. 4-46  Bacteria  normal  normal 
 
 
-
 
NC_007778  RPB_3118  binding-protein dependent transport system inner membrane protein  29.95 
 
 
284 aa  84.7  0.000000000000004  Rhodopseudomonas palustris HaA2  Bacteria  normal  normal 
 
 
-
 
NC_013946  Mrub_1883  binding-protein-dependent transport systems inner membrane component  31.11 
 
 
322 aa  84.7  0.000000000000004  Meiothermus ruber DSM 1279  Bacteria  normal  normal  0.167871 
 
 
-
 
NC_013946  Mrub_1393  binding-protein-dependent transport systems inner membrane component  29.69 
 
 
254 aa  84.3  0.000000000000005  Meiothermus ruber DSM 1279  Bacteria  normal  0.302994  normal  0.157809 
 
 
-
 
NC_013421  Pecwa_4334  binding-protein-dependent transport systems inner membrane component  25.39 
 
 
536 aa  84.3  0.000000000000005  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_3877  binding-protein-dependent transport systems inner membrane component  31.47 
 
 
282 aa  84  0.000000000000006  Salinispora tropica CNB-440  Bacteria  normal  0.901388  normal 
 
 
-
 
NC_009953  Sare_4268  binding-protein-dependent transport systems inner membrane component  29.96 
 
 
282 aa  84  0.000000000000006  Salinispora arenicola CNS-205  Bacteria  normal  normal  0.0113678 
 
 
-
 
NC_010001  Cphy_1151  binding-protein-dependent transport systems inner membrane component  25.88 
 
 
254 aa  83.6  0.000000000000008  Clostridium phytofermentans ISDg  Bacteria  normal  n/a   
 
 
-
 
NC_009664  Krad_3112  binding-protein-dependent transport systems inner membrane component  32.1 
 
 
253 aa  83.6  0.000000000000008  Kineococcus radiotolerans SRS30216  Bacteria  normal  normal  0.0371548 
 
 
-
 
NC_013093  Amir_4889  binding-protein-dependent transport systems inner membrane component  31.12 
 
 
258 aa  83.6  0.000000000000008  Actinosynnema mirum DSM 43827  Bacteria  normal  0.90454  n/a   
 
 
-
 
NC_014148  Plim_2867  binding-protein-dependent transport systems inner membrane component  27.6 
 
 
277 aa  83.2  0.00000000000001  Planctomyces limnophilus DSM 3776  Bacteria  normal  n/a   
 
 
-
 
NC_009674  Bcer98_0614  binding-protein-dependent transport systems inner membrane component  27.72 
 
 
250 aa  82.8  0.00000000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_010524  Lcho_1095  binding-protein-dependent transport systems inner membrane component  28.46 
 
 
255 aa  82.8  0.00000000000001  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010681  Bphyt_1488  binding-protein-dependent transport systems inner membrane component  32.34 
 
 
247 aa  82.8  0.00000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_013525  Tter_0403  binding-protein-dependent transport systems inner membrane component  29.15 
 
 
271 aa  82  0.00000000000002  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_007509  Bcep18194_C7650  ABC nitrate/sulfonate/bicarbonate transporter, inner membrane subunit  28.43 
 
 
247 aa  81.6  0.00000000000003  Burkholderia sp. 383  Bacteria  normal  0.621765  normal 
 
 
-
 
NC_008148  Rxyl_2084  binding-protein-dependent transport systems inner membrane component  31.72 
 
 
260 aa  81.6  0.00000000000003  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.566245  n/a   
 
 
-
 
NC_012880  Dd703_0036  binding-protein-dependent transport systems inner membrane component  33.33 
 
 
292 aa  82  0.00000000000003  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_7629  putative ABC transporter permease protein  29.87 
 
 
282 aa  81.3  0.00000000000004  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.262472  normal  0.441686 
 
 
-
 
NC_013743  Htur_0669  binding-protein-dependent transport systems inner membrane component  32.21 
 
 
258 aa  81.3  0.00000000000004  Haloterrigena turkmenica DSM 5511  Archaea  n/a    n/a   
 
 
-
 
NC_009012  Cthe_2116  binding-protein-dependent transport systems inner membrane component  23.18 
 
 
253 aa  81.3  0.00000000000004  Clostridium thermocellum ATCC 27405  Bacteria  normal  n/a   
 
 
-
 
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