More than 300 homologs were found in PanDaTox collection
for query gene PC1_0110 on replicon NC_012917
Organism: Pectobacterium carotovorum subsp. carotovorum PC1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_012917  PC1_0111  methyl-accepting chemotaxis sensory transducer  71.43 
 
 
556 aa  782    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0105  methyl-accepting chemotaxis sensory transducer  71.3 
 
 
556 aa  778    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0110  methyl-accepting chemotaxis sensory transducer  100 
 
 
548 aa  1097    Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.975087  n/a   
 
 
-
 
NC_013421  Pecwa_0104  methyl-accepting chemotaxis sensory transducer  89.6 
 
 
548 aa  988    Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3865  methyl-accepting chemotaxis sensory transducer  57.48 
 
 
551 aa  599  1e-170  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3862  methyl-accepting chemotaxis sensory transducer  57.79 
 
 
555 aa  599  1e-170  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_4446  methyl-accepting chemotaxis sensory transducer  58.38 
 
 
605 aa  595  1e-169  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0260008  normal  0.622584 
 
 
-
 
NC_008752  Aave_4495  methyl-accepting chemotaxis sensory transducer  58.19 
 
 
605 aa  593  1e-168  Acidovorax citrulli AAC00-1  Bacteria  normal  normal  0.0928828 
 
 
-
 
NC_012917  PC1_0113  methyl-accepting chemotaxis sensory transducer  58.86 
 
 
559 aa  589  1e-167  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0107  methyl-accepting chemotaxis sensory transducer  58.32 
 
 
559 aa  585  1e-166  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_0112  methyl-accepting chemotaxis sensory transducer  55.86 
 
 
556 aa  584  1.0000000000000001e-165  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_0106  methyl-accepting chemotaxis sensory transducer  55.15 
 
 
556 aa  582  1.0000000000000001e-165  Pectobacterium wasabiae WPP163  Bacteria  normal  0.405526  n/a   
 
 
-
 
NC_012912  Dd1591_4046  methyl-accepting chemotaxis sensory transducer  56.91 
 
 
560 aa  583  1.0000000000000001e-165  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3863  methyl-accepting chemotaxis sensory transducer  56.91 
 
 
560 aa  579  1e-164  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4048  methyl-accepting chemotaxis sensory transducer  58.04 
 
 
542 aa  561  1e-158  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_3864  methyl-accepting chemotaxis sensory transducer  54.46 
 
 
543 aa  552  1e-156  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012912  Dd1591_4047  methyl-accepting chemotaxis sensory transducer  54.32 
 
 
559 aa  545  1e-154  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4084  methyl-accepting chemotaxis sensory transducer  53.62 
 
 
555 aa  531  1e-149  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_3910  methyl-accepting chemotaxis sensory transducer  52.36 
 
 
555 aa  524  1e-147  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_4524  methyl-accepting chemotaxis sensory transducer  54.37 
 
 
599 aa  498  1e-140  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_012880  Dd703_3866  methyl-accepting chemotaxis sensory transducer  49.32 
 
 
545 aa  490  1e-137  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_2325  methyl-accepting chemotaxis sensory transducer  55.75 
 
 
575 aa  479  1e-134  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.952839 
 
 
-
 
NC_012912  Dd1591_4053  methyl-accepting chemotaxis sensory transducer  49.04 
 
 
545 aa  478  1e-133  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3937  methyl-accepting chemotaxis sensory transducer  46.47 
 
 
589 aa  413  1e-114  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_0428  methyl-accepting chemotaxis sensory transducer  67.21 
 
 
597 aa  396  1e-109  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2296  methyl-accepting chemotaxis sensory transducer  44.22 
 
 
584 aa  394  1e-108  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.604223  normal  0.776041 
 
 
-
 
NC_007336  Reut_C6240  chemotaxis sensory transducer  47.25 
 
 
556 aa  378  1e-103  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1417  methyl-accepting chemotaxis sensory transducer  42.07 
 
 
554 aa  377  1e-103  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.37293  n/a   
 
 
-
 
NC_013421  Pecwa_1820  methyl-accepting chemotaxis sensory transducer  41.77 
 
 
553 aa  374  1e-102  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6336  methyl-accepting chemotaxis sensory transducer  42.04 
 
 
581 aa  372  1e-102  Burkholderia phytofirmans PsJN  Bacteria  normal  0.794546  normal 
 
 
-
 
NC_008825  Mpe_A2663  methyl-accepting chemotaxis sensory transducer  46.87 
 
 
520 aa  373  1e-102  Methylibium petroleiphilum PM1  Bacteria  normal  0.0198398  normal 
 
 
-
 
NC_008825  Mpe_A2548  methyl-accepting chemotaxis protein  50.77 
 
 
525 aa  369  1e-100  Methylibium petroleiphilum PM1  Bacteria  decreased coverage  0.00975221  normal  0.500866 
 
 
-
 
NC_007908  Rfer_2225  methyl-accepting chemotaxis sensory transducer  44.44 
 
 
583 aa  367  1e-100  Rhodoferax ferrireducens T118  Bacteria  normal  0.220406  n/a   
 
 
-
 
NC_008752  Aave_0104  methyl-accepting chemotaxis sensory transducer  48.57 
 
 
622 aa  367  1e-100  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3772  methyl-accepting chemotaxis sensory transducer  42.94 
 
 
586 aa  366  1e-100  Acidovorax sp. JS42  Bacteria  normal  0.167359  normal 
 
 
-
 
NC_007908  Rfer_1480  methyl-accepting chemotaxis sensory transducer  43.42 
 
 
537 aa  364  2e-99  Rhodoferax ferrireducens T118  Bacteria  normal  0.201713  n/a   
 
 
-
 
NC_010002  Daci_3767  methyl-accepting chemotaxis sensory transducer  44.05 
 
 
544 aa  365  2e-99  Delftia acidovorans SPH-1  Bacteria  normal  0.155197  normal  0.170651 
 
 
-
 
NC_010524  Lcho_3485  methyl-accepting chemotaxis sensory transducer  44.21 
 
 
573 aa  362  8e-99  Leptothrix cholodnii SP-6  Bacteria  n/a    hitchhiker  0.000328178 
 
 
-
 
NC_007435  BURPS1710b_A1029  methyl-accepting chemotaxis protein  42.54 
 
 
562 aa  361  2e-98  Burkholderia pseudomallei 1710b  Bacteria  normal  0.815966  n/a   
 
 
-
 
NC_009075  BURPS668_A2764  methyl-accepting chemotaxis protein  42.54 
 
 
562 aa  361  2e-98  Burkholderia pseudomallei 668  Bacteria  normal  0.627836  n/a   
 
 
-
 
NC_008784  BMASAVP1_1321  methyl-accepting chemotaxis protein  42.78 
 
 
565 aa  355  2e-96  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A2620  methyl-accepting chemotaxis protein  42.78 
 
 
562 aa  354  2e-96  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0152  methyl-accepting chemotaxis protein  42.78 
 
 
565 aa  355  2e-96  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A0176  methyl-accepting chemotaxis protein  42.78 
 
 
565 aa  355  2e-96  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_007974  Rmet_3683  methyl-accepting chemotaxis sensory transducer  44.08 
 
 
613 aa  354  2.9999999999999997e-96  Cupriavidus metallidurans CH34  Bacteria  normal  0.755698  normal  0.0578518 
 
 
-
 
NC_007404  Tbd_0660  chemotaxis sensory transducer  43.04 
 
 
586 aa  352  8e-96  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.756829  normal 
 
 
-
 
NC_012791  Vapar_4189  methyl-accepting chemotaxis sensory transducer  43.01 
 
 
559 aa  350  3e-95  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_008752  Aave_2284  methyl-accepting chemotaxis sensory transducer  43.55 
 
 
547 aa  350  3e-95  Acidovorax citrulli AAC00-1  Bacteria  normal  0.206976  hitchhiker  0.0000952985 
 
 
-
 
NC_007650  BTH_II0449  methyl-accepting chemotaxis protein  42.4 
 
 
562 aa  350  4e-95  Burkholderia thailandensis E264  Bacteria  normal  0.123732  n/a   
 
 
-
 
NC_007348  Reut_B5602  methyl-accepting chemotaxis sensory transducer  42.86 
 
 
594 aa  347  2e-94  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4051  methyl-accepting chemotaxis sensory transducer  43.46 
 
 
634 aa  347  3e-94  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4163  methyl-accepting chemotaxis sensory transducer  43.46 
 
 
634 aa  347  3e-94  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2154  methyl-accepting chemotaxis sensory transducer  41.47 
 
 
569 aa  345  1e-93  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_1619  chemotaxis sensory transducer  53.72 
 
 
559 aa  343  4e-93  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.940607  normal  0.203143 
 
 
-
 
NC_003296  RS04782  methyl-accepting chemotaxis transducer transmembrane protein  41.49 
 
 
543 aa  343  7e-93  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_2436  methyl-accepting chemotaxis sensory transducer  42.15 
 
 
539 aa  342  1e-92  Acidovorax citrulli AAC00-1  Bacteria  normal  0.633872  normal 
 
 
-
 
NC_010002  Daci_5852  methyl-accepting chemotaxis sensory transducer  41.59 
 
 
618 aa  340  5e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.217953  normal 
 
 
-
 
NC_010002  Daci_3834  methyl-accepting chemotaxis sensory transducer  43.02 
 
 
595 aa  338  9.999999999999999e-92  Delftia acidovorans SPH-1  Bacteria  normal  0.10184  normal  0.0113192 
 
 
-
 
NC_008825  Mpe_A0750  methyl-accepting chemotaxis sensory transducer  42.14 
 
 
592 aa  338  9.999999999999999e-92  Methylibium petroleiphilum PM1  Bacteria  normal  0.318431  normal  0.0335504 
 
 
-
 
NC_007348  Reut_B4001  histidine kinase, HAMP region: chemotaxis sensory transducer  56.35 
 
 
585 aa  337  2.9999999999999997e-91  Ralstonia eutropha JMP134  Bacteria  normal  0.0946714  n/a   
 
 
-
 
NC_010524  Lcho_3216  methyl-accepting chemotaxis sensory transducer  51.17 
 
 
579 aa  337  3.9999999999999995e-91  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007974  Rmet_5612  methyl-accepting chemotaxis protein II  43.68 
 
 
513 aa  336  5e-91  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_0931  methyl-accepting chemotaxis sensory transducer  57.14 
 
 
591 aa  336  7e-91  Acidovorax ebreus TPSY  Bacteria  normal  0.269909  n/a   
 
 
-
 
NC_007908  Rfer_2481  methyl-accepting chemotaxis sensory transducer  53.28 
 
 
579 aa  335  2e-90  Rhodoferax ferrireducens T118  Bacteria  normal  0.37743  n/a   
 
 
-
 
NC_008752  Aave_2643  methyl-accepting chemotaxis sensory transducer  59.34 
 
 
541 aa  333  4e-90  Acidovorax citrulli AAC00-1  Bacteria  normal  0.0238907  normal  0.0164957 
 
 
-
 
NC_007908  Rfer_0925  methyl-accepting chemotaxis sensory transducer  42.61 
 
 
552 aa  332  9e-90  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_010625  Bphy_6319  methyl-accepting chemotaxis sensory transducer  39.46 
 
 
549 aa  332  1e-89  Burkholderia phymatum STM815  Bacteria  normal  0.249944  normal 
 
 
-
 
NC_008782  Ajs_3664  methyl-accepting chemotaxis sensory transducer  50.13 
 
 
598 aa  332  1e-89  Acidovorax sp. JS42  Bacteria  normal  0.197645  normal 
 
 
-
 
NC_011992  Dtpsy_2974  methyl-accepting chemotaxis sensory transducer with Cache sensor  50.39 
 
 
579 aa  331  2e-89  Acidovorax ebreus TPSY  Bacteria  hitchhiker  0.00885268  n/a   
 
 
-
 
NC_008752  Aave_1405  methyl-accepting chemotaxis sensory transducer  44.64 
 
 
548 aa  332  2e-89  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4071  methyl-accepting chemotaxis sensory transducer  39.93 
 
 
553 aa  330  4e-89  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_010002  Daci_0742  methyl-accepting chemotaxis sensory transducer  42.48 
 
 
581 aa  330  5.0000000000000004e-89  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_007908  Rfer_3610  methyl-accepting chemotaxis sensory transducer  41.39 
 
 
511 aa  329  9e-89  Rhodoferax ferrireducens T118  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_2070  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.16 
 
 
519 aa  328  1.0000000000000001e-88  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_010627  Bphy_7569  methyl-accepting chemotaxis sensory transducer  44.02 
 
 
576 aa  329  1.0000000000000001e-88  Burkholderia phymatum STM815  Bacteria  normal  0.448898  normal  0.153923 
 
 
-
 
NC_012880  Dd703_2474  methyl-accepting chemotaxis sensory transducer  39.07 
 
 
552 aa  328  1.0000000000000001e-88  Dickeya dadantii Ech703  Bacteria  normal  0.356267  n/a   
 
 
-
 
NC_008782  Ajs_1017  methyl-accepting chemotaxis sensory transducer  58.92 
 
 
591 aa  328  1.0000000000000001e-88  Acidovorax sp. JS42  Bacteria  normal  0.696887  normal 
 
 
-
 
NC_007908  Rfer_2749  methyl-accepting chemotaxis sensory transducer  58.96 
 
 
578 aa  328  2.0000000000000001e-88  Rhodoferax ferrireducens T118  Bacteria  normal  0.274613  n/a   
 
 
-
 
NC_010676  Bphyt_6645  methyl-accepting chemotaxis sensory transducer  42.42 
 
 
583 aa  328  2.0000000000000001e-88  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.983597 
 
 
-
 
NC_010625  Bphy_5592  methyl-accepting chemotaxis sensory transducer  42.72 
 
 
567 aa  327  4.0000000000000003e-88  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_4072  methyl-accepting chemotaxis sensory transducer  41.05 
 
 
540 aa  327  4.0000000000000003e-88  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_4354  methyl-accepting chemotaxis sensory transducer  39.33 
 
 
555 aa  327  5e-88  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_007908  Rfer_3137  methyl-accepting chemotaxis sensory transducer  40.89 
 
 
532 aa  326  6e-88  Rhodoferax ferrireducens T118  Bacteria  normal  0.310324  n/a   
 
 
-
 
NC_012912  Dd1591_0695  methyl-accepting chemotaxis sensory transducer  39.47 
 
 
561 aa  326  7e-88  Dickeya zeae Ech1591  Bacteria  normal  0.305861  n/a   
 
 
-
 
NC_008825  Mpe_A0586  methyl-accepting chemotaxis sensory transducer  45.93 
 
 
584 aa  326  7e-88  Methylibium petroleiphilum PM1  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2632  methyl-accepting chemotaxis sensory transducer with Cache sensor  57.98 
 
 
515 aa  325  1e-87  Ralstonia pickettii 12D  Bacteria  normal  0.397554  normal  0.945455 
 
 
-
 
NC_009080  BMA10247_0927  methyl-accepting chemotaxis protein  43.61 
 
 
580 aa  325  2e-87  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_2002  methyl-accepting chemotaxis protein  43.61 
 
 
580 aa  325  2e-87  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_006348  BMA1130  methyl-accepting chemotaxis protein  43.61 
 
 
580 aa  325  2e-87  Burkholderia mallei ATCC 23344  Bacteria  normal  0.306094  n/a   
 
 
-
 
NC_007434  BURPS1710b_2139  methyl-accepting chemotaxis protein  44.01 
 
 
616 aa  324  2e-87  Burkholderia pseudomallei 1710b  Bacteria  normal  0.942679  n/a   
 
 
-
 
NC_008785  BMASAVP1_A1571  methyl-accepting chemotaxis protein  43.61 
 
 
580 aa  325  2e-87  Burkholderia mallei SAVP1  Bacteria  normal  0.295886  n/a   
 
 
-
 
NC_010682  Rpic_3042  methyl-accepting chemotaxis sensory transducer  57.98 
 
 
515 aa  325  2e-87  Ralstonia pickettii 12J  Bacteria  normal  0.401177  normal 
 
 
-
 
NC_008836  BMA10229_A0232  methyl-accepting chemotaxis protein  43.61 
 
 
580 aa  325  2e-87  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007348  Reut_B5547  methyl-accepting chemotaxis sensory transducer  54.09 
 
 
520 aa  323  4e-87  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1797  methyl-accepting chemotaxis sensory transducer with Cache sensor  58.33 
 
 
519 aa  323  5e-87  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  decreased coverage  0.00249048  n/a   
 
 
-
 
NC_007348  Reut_B3731  methyl-accepting chemotaxis sensory transducer  41.86 
 
 
513 aa  323  6e-87  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010678  Rpic_4237  methyl-accepting chemotaxis sensory transducer  59.61 
 
 
513 aa  323  6e-87  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_012857  Rpic12D_4347  methyl-accepting chemotaxis sensory transducer with Cache sensor  59.61 
 
 
513 aa  323  6e-87  Ralstonia pickettii 12D  Bacteria  normal  normal  0.473159 
 
 
-
 
NC_012791  Vapar_4185  methyl-accepting chemotaxis sensory transducer  45.56 
 
 
579 aa  322  9.000000000000001e-87  Variovorax paradoxus S110  Bacteria  normal  0.356775  n/a   
 
 
-
 
NC_008782  Ajs_0160  methyl-accepting chemotaxis sensory transducer  42.8 
 
 
579 aa  322  9.000000000000001e-87  Acidovorax sp. JS42  Bacteria  normal  normal 
 
 
-
 
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