88 decreased-coverage genes were found for selected organism/s



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Locus tag

Gene type

Replicon accession

From

To

Strand

Gene Length

Product

Protein accession

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Organism name

Kingdom

Coverage Plot

PanDaTox homologs

Experimental validation
Bpro_0349  CDS  NC_007948  367871  368152  282  YCII-related  YP_547211  decreased coverage  1.17394e-08  normal  0.0868424  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_0350  CDS  NC_007948  368186  369316  1131  extracellular ligand-binding receptor  YP_547212  decreased coverage  2.81139e-06  normal  0.291499  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_0434  CDS  NC_007948  450179  451162  984  hypothetical protein  YP_547296  decreased coverage  2.34827e-06  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_0535  CDS  NC_007948  534631  535554  924  2-dehydropantoate 2-reductase  YP_547395  decreased coverage  0.000195412  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_0608  CDS  NC_007948  615449  615820  372  hypothetical protein  YP_547466  decreased coverage  1.70456e-08  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_0748  CDS  NC_007948  764885  765826  942  hypothetical protein  YP_547602  decreased coverage  0.0021519  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_0760  CDS  NC_007948  779599  779889  291  co-chaperonin GroES  YP_547614  decreased coverage  3.83794e-08  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1027  CDS  NC_007948  1053873  1055027  1155  extracellular ligand-binding receptor  YP_547878  decreased coverage  2.99575e-07  normal  0.161964  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1069  CDS  NC_007948  1098835  1100568  1734  peptidoglycan synthetase FtsI  YP_547919  decreased coverage  0.00861821  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1081  CDS  NC_007948  1115028  1115951  924  UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase  YP_547931  decreased coverage  1.9397e-05  normal  0.333017  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1099  CDS  NC_007948  1132589  1133041  453  biotin carboxyl carrier protein  YP_547949  decreased coverage  0.000431071  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1107  CDS  NC_007948  1140108  1143017  2910  ribonucleotide-diphosphate reductase subunit alpha  YP_547957  decreased coverage  0.000104617  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1231  CDS  NC_007948  1276523  1277725  1203  Beta-ketoadipyl CoA thiolase  YP_548080  decreased coverage  4.2843e-06  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1537  CDS  NC_007948  1588707  1589696  990  hypothetical protein  YP_548379  decreased coverage  0.00360179  normal  0.984394  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1548  CDS  NC_007948  1598299  1600365  2067  AAA ATPase, central region  YP_548390  decreased coverage  0.000910509  normal  0.627937  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1628  CDS  NC_007948  1680821  1682479  1659  benzoyl-CoA-dihydrodiol lyase  YP_548462  decreased coverage  0.00278933  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1709  CDS  NC_007948  1762593  1763519  927  alpha/beta hydrolase fold  YP_548543  decreased coverage  1.06248e-06  normal  0.814713  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1954  CDS  NC_007948  2021618  2022238  621  17 kDa surface antigen  YP_548783  decreased coverage  0.000188726  normal  0.792503  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_1956  CDS  NC_007948  2022508  2023179  672  two component transcriptional regulator  YP_548785  decreased coverage  1.21146e-05  normal  0.806146  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2032  CDS  NC_007948  2106179  2108608  2430  Lon-A peptidase  YP_548860  normal  0.914021  decreased coverage  0.00112725  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2033  CDS  NC_007948  2109164  2109799  636  hypothetical protein  YP_548861  normal  0.952729  decreased coverage  0.000661484  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2034  CDS  NC_007948  2109796  2110482  687  TetR family transcriptional regulator  YP_548862  normal  0.743283  decreased coverage  0.000716409  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2060  CDS  NC_007948  2140442  2141689  1248  Acyl-CoA dehydrogenase, C-terminal type2  YP_548888  decreased coverage  1.86324e-07  normal  0.168772  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2061  CDS  NC_007948  2141742  2142722  981  amidohydrolase 2  YP_548889  decreased coverage  1.12186e-06  normal  0.166362  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2062  CDS  NC_007948  2142872  2144116  1245  major facilitator transporter  YP_548890  decreased coverage  2.88841e-06  normal  0.488762  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2179  CDS  NC_007948  2275630  2276016  387  scaffold protein  YP_549004  decreased coverage  0.000106692  normal  0.337771  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2193  CDS  NC_007948  2289018  2290292  1275  MoeA-likedomain-containing protein  YP_549018  decreased coverage  0.00138326  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2194  CDS  NC_007948  2290303  2290554  252  molybdopterin synthase subunit MoaD  YP_549019  decreased coverage  0.000704898  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2195  CDS  NC_007948  2290556  2291458  903  dihydrodipicolinate synthase  YP_549020  decreased coverage  0.00262069  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2196  CDS  NC_007948  2291743  2292309  567  molybdopterin synthase subunit MoaE  YP_549021  decreased coverage  0.00121089  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2198  CDS  NC_007948  2292990  2293985  996  hypothetical protein  YP_549023  decreased coverage  0.000306315  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2294  CDS  NC_007948  2386623  2387603  981  hypothetical protein  YP_549115  decreased coverage  1.31413e-05  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2471  CDS  NC_007948  2585628  2586530  903  3-hydroxyisobutyrate dehydrogenase  YP_549288  normal  0.657669  decreased coverage  0.00450242  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2478  CDS  NC_007948  2593330  2594538  1209  L-carnitine dehydratase/bile acid-inducible protein F  YP_549294  normal  0.129447  decreased coverage  0.0063597  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2489  CDS  NC_007948  2607732  2608931  1200  major facilitator transporter  YP_549304  decreased coverage  0.00111531  normal  0.0966069  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2490  CDS  NC_007948  2608979  2609554  576  hypothetical protein  YP_549305  decreased coverage  0.00445849  normal  0.0895195  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2491  CDS  NC_007948  2609688  2609966  279  hypothetical protein  YP_549306  decreased coverage  0.00258271  normal  0.0855304  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2535  CDS  NC_007948  2652340  2654637  2298  putative spermidine synthase  YP_549349  normal  decreased coverage  0.00118236  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2536  CDS  NC_007948  2654634  2655584  951  hypothetical protein  YP_549350  normal  decreased coverage  0.000813757  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2612  CDS  NC_007948  2742921  2743346  426  nucleoside diphosphate kinase  YP_549426  decreased coverage  0.00143318  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2672  CDS  NC_007948  2808568  2811309  2742  pyruvate dehydrogenase subunit E1  YP_549486  decreased coverage  5.88589e-05  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_2980  CDS  NC_007948  3135491  3135865  375  hypothetical protein  YP_549792  decreased coverage  0.000136909  normal  0.640869  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3107  CDS  NC_007948  3279869  3280861  993  TRAP dicarboxylate transporter, DctP subunit  YP_549919  decreased coverage  0.00600257  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3137  CDS  NC_007948  3312306  3312572  267  hypothetical protein  YP_549949  normal  0.303068  decreased coverage  0.00943552  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3138  CDS  NC_007948  3312618  3312992  375  hypothetical protein  YP_549950  normal  0.471828  decreased coverage  0.00930888  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3203  CDS  NC_007948  3388672  3389685  1014  periplasmic binding protein/LacI transcriptional regulator  YP_550015  decreased coverage  2.54635e-06  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3204  CDS  NC_007948  3389682  3390728  1047  inner-membrane translocator  YP_550016  decreased coverage  1.46759e-05  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3238  CDS  NC_007948  3427102  3428886  1785  ABC transporter related  YP_550050  decreased coverage  0.00207534  normal  0.825064  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3385  CDS  NC_007948  3578557  3579546  990  oxidoreductase FAD-binding region  YP_550193  normal  decreased coverage  0.00882636  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3391  CDS  NC_007948  3584429  3585157  729  oxidoreductase FAD/NAD(P)-binding  YP_550199  decreased coverage  0.00300696  normal  0.0908673  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3392    NC_007948  3585521  3585811  291      decreased coverage  0.00122699  normal  0.151329  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3515  CDS  NC_007948  3716348  3717649  1302  mandelate racemase/muconate lactonizing enzyme  YP_550321  decreased coverage  7.11925e-06  normal  0.0686473  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3516  CDS  NC_007948  3717713  3718669  957  hypothetical protein  YP_550322  decreased coverage  1.84229e-06  normal  0.0629404  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3528  CDS  NC_007948  3730512  3731384  873  binding-protein-dependent transport systems inner membrane component  YP_550334  decreased coverage  0.00986882  normal  0.167942  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3529  CDS  NC_007948  3731459  3732835  1377  extracellular solute-binding protein  YP_550335  decreased coverage  0.00601615  normal  0.181904  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3842  CDS  NC_007948  4033206  4034075  870  ABC transporter related  YP_550638  decreased coverage  0.000140209  normal  0.918006  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3903  CDS  NC_007948  4097434  4098156  723  amino acid ABC transporter permease  YP_550697  decreased coverage  3.53071e-06  normal  0.052697  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_3904  CDS  NC_007948  4098271  4099167  897  extracellular solute-binding protein  YP_550698  decreased coverage  1.11161e-06  normal  0.107896  Polaromonas sp. JS666  Bacteria 
 
 
 
Bpro_4064  CDS  NC_007948  4272521  4273726  1206  extracellular ligand-binding receptor  YP_550855  decreased coverage  0.00184477  normal  0.421947  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4065  CDS  NC_007948  4273789  4274373  585  hypothetical protein  YP_550856  decreased coverage  0.00340638  normal  0.225568  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4066  CDS  NC_007948  4274737  4275378  642  hypothetical protein  YP_550857  decreased coverage  0.00119297  normal  0.232767  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4308  CDS  NC_007948  4541280  4541723  444  hypothetical protein  YP_551098  decreased coverage  0.00896563  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4309  CDS  NC_007948  4541751  4542173  423  hypothetical protein  YP_551099  decreased coverage  0.00391503  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4362  CDS  NC_007948  4602251  4603456  1206  peptidase M24  YP_551149  decreased coverage  6.4501e-07  normal  0.283543  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4449  CDS  NC_007948  4702549  4703739  1191  elongation factor Tu  YP_551234  decreased coverage  2.57017e-06  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4533  CDS  NC_007948  4794397  4795227  831  IclR family transcriptional regulator  YP_551317  decreased coverage  1.15279e-06  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4534  CDS  NC_007948  4795385  4796344  960  beta-lactamase-like  YP_551318  decreased coverage  1.47099e-06  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4713  CDS  NC_007948  5001067  5004045  2979  DNA topoisomerase III  YP_551491  decreased coverage  0.000244341  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_4894  CDS  NC_007948  5184447  5184902  456  RNA recognition motif-containing protein  YP_551668  decreased coverage  9.87848e-05  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5042  CDS  NC_007949  154022  154240  219  hypothetical protein  YP_551812  decreased coverage  7.10017e-05  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5043  CDS  NC_007949  154296  154985  690  hypothetical protein  YP_551813  decreased coverage  0.000269108  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5085  CDS  NC_007949  198545  198814  270  putative transcriptional regulator  YP_551854  decreased coverage  3.80445e-08  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5159  CDS  NC_007949  269567  270046  480  hypothetical protein  YP_551924  decreased coverage  0.00662684  normal  0.251517  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5181  CDS  NC_007949  287547  288470  924  2-dehydropantoate 2-reductase  YP_551944  decreased coverage  3.87537e-08  normal  0.288245  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5274  CDS  NC_007950  24748  26796  2049  2,4-dienoyl-CoA reductase  YP_552031  decreased coverage  1.2986e-07  normal  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5339  CDS  NC_007950  100557  100979  423  hypothetical protein  YP_552093  decreased coverage  2.31528e-05  normal  0.965278  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5371  CDS  NC_007950  134297  134881  585  hypothetical protein  YP_552125  decreased coverage  8.97317e-10  hitchhiker  8.08458e-05  Polaromonas sp. JS666  Bacteria 
 
 
 
Bpro_5374  CDS  NC_007950  135774  136295  522  hypothetical protein  YP_552127  hitchhiker  6.46558e-08  decreased coverage  2.1648e-06  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5443  CDS  NC_007950  195425  196534  1110  type II secretion system protein E  YP_552195  decreased coverage  0.00200172  normal  0.203464  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5454  CDS  NC_007950  206474  207748  1275  hypothetical protein  YP_552206  normal  0.131248  decreased coverage  0.00950425  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5462  CDS  NC_007950  214194  214436  243  hypothetical protein  YP_552214  normal  0.522357  decreased coverage  0.00859293  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5465  CDS  NC_007950  216575  219127  2553  Type IV secretory pathway VirB4 components-like  YP_552217  normal  0.257739  decreased coverage  0.00704778  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5466  CDS  NC_007950  219121  219420  300  type IV secretory pathway, VirB3-like  YP_552218  normal  decreased coverage  0.00819718  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_5467  CDS  NC_007950  219427  219792  366  hypothetical protein  YP_552219  normal  decreased coverage  0.00829524  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_R0023  tRNA  NC_007948  2108684  2108759  76  tRNA-Gly    normal  0.881928  decreased coverage  0.000601016  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_R0024  tRNA  NC_007948  2108864  2108937  74  tRNA-Cys    normal  0.85349  decreased coverage  0.000572692  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_R0025  tRNA  NC_007948  2109011  2109103  93  tRNA-Leu    normal  0.680861  decreased coverage  0.000577389  Polaromonas sp. JS666  Bacteria 
 
 
-
 
Bpro_R0034  tRNA  NC_007948  3136016  3136092  77  tRNA-Arg    decreased coverage  6.49431e-05  normal  0.612549  Polaromonas sp. JS666  Bacteria 
 
 
-
 
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