Gene Bpro_1954 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBpro_1954 
Symbol 
ID4015398 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolaromonas sp. JS666 
KingdomBacteria 
Replicon accessionNC_007948 
Strand+ 
Start bp2021618 
End bp2022238 
Gene Length621 bp 
Protein Length206 aa 
Translation table11 
GC content69% 
IMG OID637941622 
Product17 kDa surface antigen 
Protein accessionYP_548783 
Protein GI91787831 
COG category[S] Function unknown 
COG ID[COG3134] Predicted outer membrane lipoprotein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.000188726 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.792503 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACGTT CTGCCATTCT TTGCCTGACC ACGCTGCTGG CAGCGGGCGC CCAGGCCCAG 
ACCTTCAACG ACACGGCCCG CGTGCGCAAT GTCAACCCAC AGTACGAGAA CGTCTCCGTG 
CCGCGCAACG AGTGCACCAG CCAGTGGGTG ACCGAGCAGC AACCCGTGGC GGCTTCGCGC 
AATTACGGCG GGCTGGCGGT TGGCGGTGTG GCCGGCGCCG TGCTGGGCAA CCAGGTCGGC 
AAGGGGCACG GCCGCGAAGC CGCCACCGCG CTCGGTGCCG TGGTCGGCGC GCTGGCCGGC 
GAGCACTTTG CCAACCAGAA CGGCTGGGGT GGTGGCTACC AGCAGGCAGC GCAGCCGCAG 
CAGCGCCAGG TGCAAACCTG CAACACCGTC AACGACGTGC AGTCCCGCCT GACGGGCTAC 
CAGGTCGAGT ACGAGTACCG CGGTCAGGTC TACAGCACGG TGACCCGCGA GAACCCGGGC 
CGCACCTTGC CCGTGCGCGT CTCGGTGGCC CCGGTGGAGC CGGTGGCGTC GGTGGGGCGC 
GAGCTCCAGG GCGCACGCGA ATACCAGGGC CGGCGCGATG ACCGTGGCGG TCGCGAGTAC 
TATGGTGCTT ACAACCGATG A
 
Protein sequence
MKRSAILCLT TLLAAGAQAQ TFNDTARVRN VNPQYENVSV PRNECTSQWV TEQQPVAASR 
NYGGLAVGGV AGAVLGNQVG KGHGREAATA LGAVVGALAG EHFANQNGWG GGYQQAAQPQ 
QRQVQTCNTV NDVQSRLTGY QVEYEYRGQV YSTVTRENPG RTLPVRVSVA PVEPVASVGR 
ELQGAREYQG RRDDRGGREY YGAYNR