| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bpro_5465 |
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| Symbol | |
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| ID | 4016424 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polaromonas sp. JS666 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007950 |
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| Strand | - |
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| Start bp | 216575 |
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| End bp | 219127 |
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| Gene Length | 2553 bp |
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| Protein Length | 850 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637945085 |
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| Product | Type IV secretory pathway VirB4 components-like |
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| Protein accession | YP_552217 |
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| Protein GI | 91791267 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.257739 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.00704778 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCTGAATT TGAAATCGTT GATTCGCGAC TACAACAAAG AGGTTGGGTC CTACCCTGAA
CTTGTACCCT GGTTCGGCCA GATCACGCCC GGCTTGGTGA TATGCATGGA CGGTTCCTTG
CTGGCCATGT TTGAGTACGA CGGCATCGAC CTCCAAAGTA CCGAGGGCGA TCAGCATGAT
CAGGCCTCTA ACTCGATGGA GATCGCACTG CGGGCGTTCG ATGATCGAAA TATCGGCTGG
TTCTACGTGG ACAAGCGCCG GCGCACCTTC CTTGGTGCCG CGACTGGGGA GAACGTGGTT
GCGCGCGGTG TGGACGACGC CTGGCGGGAA TCCGTTGACG ATGGCTCGCT TTCGGAGATT
CGCCACTATA TTGCGATAGC ATTTCGGCCG TTTCGCGGCA CGATGGGTTT CTTTGACGAG
ATTTCATCGA CCATGATGGA CGAGCACAGG AGCCTTCCTG CTGCTATTGC CAAAACGATC
TCGTCCAAGC TTAGGATGGA GAAGGGCATC GAGAAGATGC AAGGCAAAAT TATCGGTGCG
ACGGCTGCAT TTGAGTCGCA GATATCTTCA TTCATGGGGA CGCTTACGAC CTTGAACGCG
CGGCGCCTTA CCGATCAAGA GCTTCTCTGT AGTCTAAGCG ACCGCGTGAA TCTTGCGACC
CCTCGCACCA AGGTGTCGTG TGGGCCACTT CCGAGCTACC TAAATACGTT GCTCGTCACC
GACACCCTGA AGAGGGCAGA CGGCGGCATT TTGGAGTTCG TTGGGGCTAC GCGCTCGCAG
TTCGTTCAGA TGTTGAGTGT GAAAGGTCTG CCGCAGGTCA TCAACAACGA AGACGTCGAA
GCCCTGCTGT CCCTTCAAGG CGATTTTTCC GTCGTGCAGC AATATCGCTT CCTTGACCGG
GAGAAGGCAA AGGCATACAT AAACGATTGC GAACATCACT ACCGGTCTTC AATCAAGTCA
CCGATGACAC AGGCCTTCGA GCGCCTAAGC GGCAACGAGT CCGACTCGAT TGACATGGGC
ATGTTAGCCC TTGCGGAAGA TTCATCGGCT GCCCTGGCGG AATTGACGGG CGATGGGGTC
AATTTTGGAT ACCACACGAT GGCTGTCATG GCGATTGGGC GGGACCGCCG GGACCTGGAC
ATTACCTTAA AGGGAATAGC GGGCCTCTAT TCAAATTTGG GCTACGGTGT GGTACGGGAG
GTCGTGAACC AGGTGGGCGC CTTCTGCGCA ACGATTCCAG GGGGCGGCGA CTCAACCGTG
CGAACCTCTA TGGTATCCAC TCGGAACTTG TCCGACATGT CCCTGGTCCG GTCGATAAAG
TCGGGATCGT CACAGAACGA GTATTTGACG GAACAGCTGG GCTCTCCTCA GGAAGCCCTC
TGCCTCTTCC CTACGACCAG TGGAGTGCCG GAATATTTCA ATTTCCACGT CGGTGACGTC
GGCCATTTTG CAATCATTGG TGGGACCGGT GCCGGCAAGA CCACATTGCT GAATTTGCTG
ATCATGATGT GGCAGAAATA CAGAGGTGCT CGAACAATTG TGATCGACAA GGATGAGAGT
TGCTTCATCA CAATCAAGTC GATGGGAGGC TCATATATCA GCATTGACCC TGAGAAGGCC
CGTGCAAAGA TGAATCCCCT TCGGTGGATA AAGAACCCAA ATTCATGGGC GAAGGTAGCG
TCCTGGATCG AGGGTGCGAT GTCAGTTTAT GGAAACGAGG CCATCACGGC GCAGCAATCA
ACGCTGATAA CCCAAGTTAT TTCTCAACTT GCTACGCGCG AACCACACCG GCACACGCTC
GGCAACTTCC ATGCTCAACT GAACGGACTG AACCAGGATC TCGCCGCGAG GCTCGCACCG
TTCGTTGCAG TTGCCGGATC CGCGAATACC CAAAGCTCAG GGTCGAAGTA CGCCCACCTT
TTCGATGGCT ATGAAGATGG GTTTGCAGCG CAACTCGCCG CTGACTCAAG CGGAATCATC
GGCATTGACG TGAATGCTTT GTTGAAAGAT GAAAAGCTTG CGCCGTGTGT GATCGAGTAT
CTTTTCATGG CGATTGACGA GATGATCGAT GGACTCTCGC CAACAATGAT CTACCTGGAG
GAGGGGTGGT ATCTGCTTCA AAATGAGCGT TTCAAGGGTG TCTACGAAGA CTACTTGAGG
ACATTACGGA AGCGGAGGGC AATCATTGGC CTCGCTACGC AGTCGGTTTT TGACATCGAG
AAGGTAAAGC TCTCTGCTGC GTTCAACGAC AACGTTCGCA CCAGAATTTA CCTGCCAAGC
GCAAAGGCTA AATCTGCCGC GAAGGTATAT ATCGATTATC TGGGTCTCAC AGCTGAGCAC
GTCGACGTGC TCGCGAACGC CATACCCAAG CGCCATTACA TGATCGAGCA GGACGGTCGT
ATTCGCTTGA TCGATGTCTC GTTACCGCCA GAAATCCTTG CACATACCCG GTCCGATCCG
CGGGCGAAAC TTGTGTTCAA GAAGCTTCTC GATGAGGGCT TTGAAGGCCA GGAACTGTCC
CAAGCCTATG TCAAAACCCT ATTGAACCAC TGA
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| Protein sequence | MLNLKSLIRD YNKEVGSYPE LVPWFGQITP GLVICMDGSL LAMFEYDGID LQSTEGDQHD
QASNSMEIAL RAFDDRNIGW FYVDKRRRTF LGAATGENVV ARGVDDAWRE SVDDGSLSEI
RHYIAIAFRP FRGTMGFFDE ISSTMMDEHR SLPAAIAKTI SSKLRMEKGI EKMQGKIIGA
TAAFESQISS FMGTLTTLNA RRLTDQELLC SLSDRVNLAT PRTKVSCGPL PSYLNTLLVT
DTLKRADGGI LEFVGATRSQ FVQMLSVKGL PQVINNEDVE ALLSLQGDFS VVQQYRFLDR
EKAKAYINDC EHHYRSSIKS PMTQAFERLS GNESDSIDMG MLALAEDSSA ALAELTGDGV
NFGYHTMAVM AIGRDRRDLD ITLKGIAGLY SNLGYGVVRE VVNQVGAFCA TIPGGGDSTV
RTSMVSTRNL SDMSLVRSIK SGSSQNEYLT EQLGSPQEAL CLFPTTSGVP EYFNFHVGDV
GHFAIIGGTG AGKTTLLNLL IMMWQKYRGA RTIVIDKDES CFITIKSMGG SYISIDPEKA
RAKMNPLRWI KNPNSWAKVA SWIEGAMSVY GNEAITAQQS TLITQVISQL ATREPHRHTL
GNFHAQLNGL NQDLAARLAP FVAVAGSANT QSSGSKYAHL FDGYEDGFAA QLAADSSGII
GIDVNALLKD EKLAPCVIEY LFMAIDEMID GLSPTMIYLE EGWYLLQNER FKGVYEDYLR
TLRKRRAIIG LATQSVFDIE KVKLSAAFND NVRTRIYLPS AKAKSAAKVY IDYLGLTAEH
VDVLANAIPK RHYMIEQDGR IRLIDVSLPP EILAHTRSDP RAKLVFKKLL DEGFEGQELS
QAYVKTLLNH
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