More than 300 homologs were found in PanDaTox collection
for query gene Swit_0300 on replicon NC_009511
Organism: Sphingomonas wittichii RW1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009511  Swit_0300  short-chain dehydrogenase/reductase SDR  100 
 
 
262 aa  510  1e-143  Sphingomonas wittichii RW1  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_5774  short-chain dehydrogenase/reductase SDR  47.78 
 
 
266 aa  213  1.9999999999999998e-54  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.798057  normal 
 
 
-
 
NC_010552  BamMC406_3582  short-chain dehydrogenase/reductase SDR  46.82 
 
 
266 aa  211  7e-54  Burkholderia ambifaria MC40-6  Bacteria  normal  normal  0.30636 
 
 
-
 
NC_013132  Cpin_5699  short-chain dehydrogenase/reductase SDR  45.19 
 
 
265 aa  206  3e-52  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal  0.542454 
 
 
-
 
NC_007493  RSP_0610  putative 3-oxoacyl-(acyl-carrier-protein) reductase  45.39 
 
 
268 aa  198  9e-50  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_013947  Snas_4708  short-chain dehydrogenase/reductase SDR  45.32 
 
 
279 aa  197  2.0000000000000003e-49  Stackebrandtia nassauensis DSM 44728  Bacteria  normal  0.270996  normal 
 
 
-
 
NC_009338  Mflv_0296  short-chain dehydrogenase/reductase SDR  45.72 
 
 
263 aa  191  8e-48  Mycobacterium gilvum PYR-GCK  Bacteria  normal  normal  0.0501605 
 
 
-
 
NC_009719  Plav_0923  short-chain dehydrogenase/reductase SDR  42.48 
 
 
263 aa  177  2e-43  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.148481  normal 
 
 
-
 
NC_009511  Swit_3284  short-chain dehydrogenase/reductase SDR  41.7 
 
 
266 aa  174  1.9999999999999998e-42  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.197141 
 
 
-
 
NC_013131  Caci_3849  short-chain dehydrogenase/reductase SDR  47.78 
 
 
267 aa  172  5e-42  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.0190565  normal  0.0181736 
 
 
-
 
NC_010725  Mpop_3325  short-chain dehydrogenase/reductase SDR  38.75 
 
 
263 aa  155  9e-37  Methylobacterium populi BJ001  Bacteria  normal  normal  0.299439 
 
 
-
 
NC_010505  Mrad2831_3521  short-chain dehydrogenase/reductase SDR  41.03 
 
 
265 aa  154  1e-36  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc3138  oxidoreductase protein  41.64 
 
 
262 aa  154  2e-36  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_3128  short-chain dehydrogenase/reductase SDR  38.24 
 
 
263 aa  152  4e-36  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0549693 
 
 
-
 
NC_011757  Mchl_3449  short-chain dehydrogenase/reductase SDR  38.38 
 
 
263 aa  152  4e-36  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.637652  normal  0.978544 
 
 
-
 
NC_009956  Dshi_3903  short-chain dehydrogenase/reductase SDR  35.85 
 
 
265 aa  147  1.0000000000000001e-34  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.60133 
 
 
-
 
NC_007947  Mfla_1802  short-chain dehydrogenase/reductase SDR  40.66 
 
 
264 aa  146  4.0000000000000006e-34  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_013595  Sros_5801  short-chain dehydrogenase/reductase SDR  40.75 
 
 
263 aa  145  6e-34  Streptosporangium roseum DSM 43021  Bacteria  normal  0.188706  normal  0.0964504 
 
 
-
 
NC_012853  Rleg_5753  short-chain dehydrogenase/reductase SDR  34.44 
 
 
264 aa  140  1.9999999999999998e-32  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.83567  normal 
 
 
-
 
NC_010682  Rpic_3415  short-chain dehydrogenase/reductase SDR  36.7 
 
 
262 aa  139  3.9999999999999997e-32  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_013235  Namu_1537  short-chain dehydrogenase/reductase SDR  38.06 
 
 
260 aa  139  6e-32  Nakamurella multipartita DSM 44233  Bacteria  decreased coverage  0.00860975  normal 
 
 
-
 
NC_008243  Meso_4522  short-chain dehydrogenase/reductase SDR  38.2 
 
 
261 aa  138  7e-32  Chelativorans sp. BNC1  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A2852  putative oxidoreductase protein  37.31 
 
 
264 aa  139  7e-32  Methylibium petroleiphilum PM1  Bacteria  normal  0.91402  normal 
 
 
-
 
NC_012560  Avin_11510  Short-chain dehydrogenase/reductase SDR  40.07 
 
 
264 aa  138  7.999999999999999e-32  Azotobacter vinelandii DJ  Bacteria  normal  0.90584  n/a   
 
 
-
 
NC_007492  Pfl01_3522  Short-chain dehydrogenase/reductase SDR  38.01 
 
 
265 aa  138  8.999999999999999e-32  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.284678  normal  0.417137 
 
 
-
 
NC_011368  Rleg2_5145  short-chain dehydrogenase/reductase SDR  37.55 
 
 
263 aa  138  1e-31  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.622858  normal  0.939609 
 
 
-
 
NC_012856  Rpic12D_3069  short-chain dehydrogenase/reductase SDR  36.7 
 
 
278 aa  138  1e-31  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_3610  short-chain dehydrogenase/reductase SDR  36.19 
 
 
262 aa  137  2e-31  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_4560  short-chain dehydrogenase/reductase SDR  36.47 
 
 
268 aa  137  2e-31  Methylobacterium populi BJ001  Bacteria  normal  normal  0.62458 
 
 
-
 
NC_013525  Tter_0758  short-chain dehydrogenase/reductase SDR  32.2 
 
 
262 aa  136  4e-31  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013037  Dfer_1972  short-chain dehydrogenase/reductase SDR  36.08 
 
 
255 aa  135  6.0000000000000005e-31  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.336427  normal 
 
 
-
 
NC_012792  Vapar_5789  short-chain dehydrogenase/reductase SDR  37.83 
 
 
263 aa  135  7.000000000000001e-31  Variovorax paradoxus S110  Bacteria  normal  n/a   
 
 
-
 
NC_010511  M446_0924  short-chain dehydrogenase/reductase SDR  40.51 
 
 
265 aa  135  8e-31  Methylobacterium sp. 4-46  Bacteria  normal  normal  0.434942 
 
 
-
 
NC_007348  Reut_B4504  Short-chain dehydrogenase/reductase SDR  37.64 
 
 
264 aa  134  9.999999999999999e-31  Ralstonia eutropha JMP134  Bacteria  normal  0.371562  n/a   
 
 
-
 
NC_011894  Mnod_1310  short-chain dehydrogenase/reductase SDR  37.82 
 
 
265 aa  134  9.999999999999999e-31  Methylobacterium nodulans ORS 2060  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_2392  short-chain dehydrogenase/reductase SDR  37.88 
 
 
255 aa  132  6.999999999999999e-30  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.432373 
 
 
-
 
NC_007974  Rmet_4076  putative short-chain dehydrogenase/reductase SDR  36.9 
 
 
264 aa  131  9e-30  Cupriavidus metallidurans CH34  Bacteria  normal  0.142044  normal 
 
 
-
 
NC_007963  Csal_2809  short-chain dehydrogenase/reductase SDR  35.93 
 
 
264 aa  130  1.0000000000000001e-29  Chromohalobacter salexigens DSM 3043  Bacteria  normal  0.53126  n/a   
 
 
-
 
NC_010581  Bind_1126  short-chain dehydrogenase/reductase SDR  35.61 
 
 
263 aa  131  1.0000000000000001e-29  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.834586 
 
 
-
 
NC_009436  Ent638_3901  short-chain dehydrogenase/reductase SDR  34.8 
 
 
264 aa  130  3e-29  Enterobacter sp. 638  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1831  short-chain dehydrogenase/reductase SDR  39.03 
 
 
263 aa  130  3e-29  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.144815  normal 
 
 
-
 
NC_010172  Mext_4079  short-chain dehydrogenase/reductase SDR  34.21 
 
 
268 aa  129  3e-29  Methylobacterium extorquens PA1  Bacteria  normal  0.130432  normal 
 
 
-
 
NC_007952  Bxe_B2157  putative short-chain dehydrogenase/reductase SDR  37.84 
 
 
252 aa  130  3e-29  Burkholderia xenovorans LB400  Bacteria  normal  0.166791  normal  0.301941 
 
 
-
 
NC_008254  Meso_1537  short-chain dehydrogenase/reductase SDR  33.85 
 
 
259 aa  129  3e-29  Chelativorans sp. BNC1  Bacteria  normal  0.460679  n/a   
 
 
-
 
NC_011757  Mchl_4447  short-chain dehydrogenase/reductase SDR  34.21 
 
 
268 aa  130  3e-29  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_007650  BTH_II1694  D-beta-hydroxybutyrate dehydrogenase  36.67 
 
 
341 aa  129  4.0000000000000003e-29  Burkholderia thailandensis E264  Bacteria  normal  0.636471  n/a   
 
 
-
 
NC_009667  Oant_2101  short-chain dehydrogenase/reductase SDR  34.23 
 
 
259 aa  129  5.0000000000000004e-29  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.511281  n/a   
 
 
-
 
NC_008463  PA14_46890  putative short-chain dehydrogenase  36.98 
 
 
264 aa  129  7.000000000000001e-29  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  hitchhiker  0.0000947706 
 
 
-
 
NC_013757  Gobs_3777  short-chain dehydrogenase/reductase SDR  34.08 
 
 
262 aa  128  9.000000000000001e-29  Geodermatophilus obscurus DSM 43160  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_0923  short-chain dehydrogenase/reductase SDR  31.34 
 
 
261 aa  128  1.0000000000000001e-28  Geobacillus sp. WCH70  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA1399  D-beta-hydroxybutyrate dehydrogenase  36.3 
 
 
264 aa  127  2.0000000000000002e-28  Burkholderia mallei ATCC 23344  Bacteria  normal  0.753199  n/a   
 
 
-
 
NC_009079  BMA10247_A1482  D-beta-hydroxybutyrate dehydrogenase  36.3 
 
 
264 aa  127  2.0000000000000002e-28  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009485  BBta_5043  putative short-chain dehydrogenase  35.42 
 
 
264 aa  127  2.0000000000000002e-28  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.239817  normal 
 
 
-
 
NC_008784  BMASAVP1_0516  D-beta-hydroxybutyrate dehydrogenase  36.3 
 
 
264 aa  127  2.0000000000000002e-28  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0132  D-beta-hydroxybutyrate dehydrogenase  36.3 
 
 
264 aa  127  2.0000000000000002e-28  Burkholderia mallei NCTC 10229  Bacteria  normal  0.383327  n/a   
 
 
-
 
NC_013521  Sked_14190  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein  36.3 
 
 
264 aa  126  3e-28  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.785349  normal 
 
 
-
 
NC_009078  BURPS1106A_A0986  D-beta-hydroxybutyrate dehydrogenase  35.93 
 
 
264 aa  126  3e-28  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_013595  Sros_4239  short chain dehydrogenase  35.49 
 
 
268 aa  126  3e-28  Streptosporangium roseum DSM 43021  Bacteria  normal  normal  0.0369625 
 
 
-
 
NC_011365  Gdia_0110  short-chain dehydrogenase/reductase SDR  34.7 
 
 
264 aa  126  3e-28  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  normal  0.0585429 
 
 
-
 
NC_007925  RPC_1997  3-hydroxybutyrate dehydrogenase  36.68 
 
 
259 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_007925  RPC_2000  3-hydroxybutyrate dehydrogenase  36.68 
 
 
259 aa  126  4.0000000000000003e-28  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1069  D-beta-hydroxybutyrate dehydrogenase  35.93 
 
 
264 aa  125  5e-28  Burkholderia pseudomallei 668  Bacteria  normal  0.304353  n/a   
 
 
-
 
NC_011773  BCAH820_3407  oxidoreductase, short chain dehydrogenase/reductase family  32.97 
 
 
264 aa  125  6e-28  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_008541  Arth_1813  short-chain dehydrogenase/reductase SDR  32.22 
 
 
264 aa  125  6e-28  Arthrobacter sp. FB24  Bacteria  normal  0.0782028  n/a   
 
 
-
 
NC_013730  Slin_0882  short-chain dehydrogenase/reductase SDR  35.88 
 
 
262 aa  125  6e-28  Spirosoma linguale DSM 74  Bacteria  normal  0.845671  normal 
 
 
-
 
NC_011071  Smal_3694  short-chain dehydrogenase/reductase SDR  36.76 
 
 
264 aa  124  1e-27  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.595951 
 
 
-
 
NC_013595  Sros_3004  short chain dehydrogenase  34.71 
 
 
268 aa  124  1e-27  Streptosporangium roseum DSM 43021  Bacteria  normal  normal 
 
 
-
 
NC_013131  Caci_3622  short-chain dehydrogenase/reductase SDR  38.15 
 
 
262 aa  125  1e-27  Catenulispora acidiphila DSM 44928  Bacteria  normal  0.154401  normal 
 
 
-
 
NC_009656  PSPA7_4040  putative short-chain dehydrogenase  37.74 
 
 
264 aa  124  1e-27  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_007925  RPC_3421  short-chain dehydrogenase/reductase SDR  33.82 
 
 
264 aa  123  2e-27  Rhodopseudomonas palustris BisB18  Bacteria  normal  normal  0.126254 
 
 
-
 
NC_013172  Bfae_31260  dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like  33.21 
 
 
266 aa  124  2e-27  Brachybacterium faecium DSM 4810  Bacteria  normal  0.974628  n/a   
 
 
-
 
NC_011666  Msil_3611  short-chain dehydrogenase/reductase SDR  34.34 
 
 
262 aa  124  2e-27  Methylocella silvestris BL2  Bacteria  n/a    normal  0.280477 
 
 
-
 
NC_011658  BCAH187_A3420  oxidoreductase, short chain dehydrogenase/reductase family  32.59 
 
 
264 aa  124  2e-27  Bacillus cereus AH187  Bacteria  normal  0.638189  n/a   
 
 
-
 
NC_007952  Bxe_B2664  putative short-chain type dehydrogenase/reductase  38.64 
 
 
255 aa  123  3e-27  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_008048  Sala_0883  short-chain dehydrogenase/reductase SDR  35.79 
 
 
264 aa  123  3e-27  Sphingopyxis alaskensis RB2256  Bacteria  normal  normal 
 
 
-
 
NC_013440  Hoch_6199  short-chain dehydrogenase/reductase SDR  34.44 
 
 
264 aa  122  4e-27  Haliangium ochraceum DSM 14365  Bacteria  normal  0.36792  normal 
 
 
-
 
NC_007951  Bxe_A3257  putative 3-oxoacyl-acyl carrier protein reductase  32.2 
 
 
259 aa  122  4e-27  Burkholderia xenovorans LB400  Bacteria  normal  0.0566153  normal  0.418945 
 
 
-
 
NC_013411  GYMC61_1799  short-chain dehydrogenase/reductase SDR  31.95 
 
 
261 aa  122  4e-27  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_009379  Pnuc_1069  short-chain dehydrogenase/reductase SDR  32.96 
 
 
261 aa  122  4e-27  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.199007  n/a   
 
 
-
 
NC_010086  Bmul_4319  short-chain dehydrogenase/reductase SDR  37.18 
 
 
264 aa  123  4e-27  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.070024  normal  0.514561 
 
 
-
 
NC_007435  BURPS1710b_A2301  D-beta-hydroxybutyrate dehydrogenase  35.56 
 
 
264 aa  122  5e-27  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007509  Bcep18194_C7331  3-oxoacyl-[acyl-carrier-protein] reductase  35.58 
 
 
249 aa  122  5e-27  Burkholderia sp. 383  Bacteria  normal  0.753901  normal 
 
 
-
 
NC_010581  Bind_2338  short-chain dehydrogenase/reductase SDR  34.57 
 
 
263 aa  122  5e-27  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal  0.288132 
 
 
-
 
NC_012560  Avin_16490  Short-chain dehydrogenase/reductase SDR  35.71 
 
 
263 aa  122  5e-27  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_005945  BAS3188  short chain dehydrogenase/reductase family oxidoreductase  32.23 
 
 
264 aa  122  6e-27  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_3440  short chain dehydrogenase/reductase family oxidoreductase  32.23 
 
 
264 aa  122  6e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK3090  short chain dehydrogenase/reductase family oxidoreductase  31.87 
 
 
264 aa  122  7e-27  Bacillus cereus E33L  Bacteria  normal  0.0951235  n/a   
 
 
-
 
NC_013510  Tcur_3385  short-chain dehydrogenase/reductase SDR  36.19 
 
 
248 aa  121  9e-27  Thermomonospora curvata DSM 43183  Bacteria  normal  0.0734499  n/a   
 
 
-
 
NC_005957  BT9727_3169  short chain dehydrogenase/reductase family oxidoreductase  32.23 
 
 
264 aa  121  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  hitchhiker  0.0000352781  n/a   
 
 
-
 
NC_010681  Bphyt_1303  short-chain dehydrogenase/reductase SDR  31.82 
 
 
259 aa  121  9.999999999999999e-27  Burkholderia phytofirmans PsJN  Bacteria  normal  0.154867  normal  0.0871554 
 
 
-
 
NC_013132  Cpin_4318  short-chain dehydrogenase/reductase SDR  35.23 
 
 
264 aa  121  9.999999999999999e-27  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.319531  normal  0.0832513 
 
 
-
 
NC_007510  Bcep18194_A5619  Short-chain dehydrogenase/reductase SDR  33.33 
 
 
277 aa  121  9.999999999999999e-27  Burkholderia sp. 383  Bacteria  normal  0.0753007  normal 
 
 
-
 
NC_013093  Amir_2423  short-chain dehydrogenase/reductase SDR  39.19 
 
 
262 aa  121  9.999999999999999e-27  Actinosynnema mirum DSM 43827  Bacteria  normal  0.312267  n/a   
 
 
-
 
NC_013037  Dfer_3411  short-chain dehydrogenase/reductase SDR  31.58 
 
 
279 aa  120  1.9999999999999998e-26  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.528126  normal 
 
 
-
 
NC_011071  Smal_3069  short-chain dehydrogenase/reductase SDR  38.38 
 
 
252 aa  120  1.9999999999999998e-26  Stenotrophomonas maltophilia R551-3  Bacteria  normal  normal  0.0408517 
 
 
-
 
NC_007794  Saro_1750  3-hydroxybutyrate dehydrogenase  36.64 
 
 
261 aa  120  1.9999999999999998e-26  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.594296  n/a   
 
 
-
 
NC_007802  Jann_2277  short-chain dehydrogenase/reductase SDR  33.46 
 
 
259 aa  120  1.9999999999999998e-26  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_011989  Avi_1391  NAD/NADP dependent oxidoreductase  31.82 
 
 
261 aa  120  1.9999999999999998e-26  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_0398  short-chain dehydrogenase/reductase SDR  34.83 
 
 
259 aa  120  1.9999999999999998e-26  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.882339 
 
 
-
 
NC_009077  Mjls_5718  short chain dehydrogenase  35.47 
 
 
264 aa  120  1.9999999999999998e-26  Mycobacterium sp. JLS  Bacteria  normal  normal 
 
 
-
 
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