| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPC_3421 |
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| Symbol | |
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| ID | 3970465 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris BisB18 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007925 |
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| Strand | - |
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| Start bp | 3808326 |
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| End bp | 3809120 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637926532 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_533280 |
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| Protein GI | 90424910 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.126254 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGATCG ATCTTTCCGG CAAGACCGCG CTGGTGACCG GCTCCACCGC CGGCATCGGC
CACGCCATCG CCAAGGGCCT CGCCGCCGCG GGCGCCAGCG TGGTGGTCAA TGGCCGCAGC
CAGGGCAAGG TCGACGCCGC GGTCGCGGCG ATCGGCAAGG TCGCCGCCGG CGGCAAGATC
ATCGGCGTCG CCGCCGACGT CTCCACCGCG GACGGCTGCG ACGCGCTGGT CACCGCCTAT
CCGGACGTCG ACATCCTGAT CAACAATGCC GGCATCTTCG AGCCGAAGGG TTTCTTCGAC
ATTCCCGACG AGGACTGGGC GCGGTTCTTC GACGTCAACG TGATGAGCGG GATAAGGCTG
TCGCGCGCCT ATATGCCGGC GATGCTGAGC CGCAACTGGG GCCGCATCGT CTTCATCGCC
TCGGAATCCG CGATCATGAT TCCGAAGGAG ATGATCCACT ACGGCATGAC CAAGACCGCC
CAGCTCTCGG TCTCGCGCGG GCTCGCCGAG CTGACCCGCG GCACCGCGGT CACCGTCAAC
GCGGTGATGC CGGGGCCGAC GATGTCGGAA GGCGTGCAGA CCTTCGTCGC CGATCTCGCC
AGGCAGAACG GCGAATCCGA AGCCGAGGCC GCGGCGAACT TCGTCAAACA GCACCGCCCA
GGCTCGCTGA TCCAGCGCTT CGCCAGCGTC GAGGAGGTCG CCAACATGGT GGTGTATGTC
AGCTCGAAAG AGGCCTCCGC CACCAACGGC GCCGCGCTGC GCGTCGAGGG CGGGCTGATC
CAGACCATCG CGTGA
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| Protein sequence | MKIDLSGKTA LVTGSTAGIG HAIAKGLAAA GASVVVNGRS QGKVDAAVAA IGKVAAGGKI
IGVAADVSTA DGCDALVTAY PDVDILINNA GIFEPKGFFD IPDEDWARFF DVNVMSGIRL
SRAYMPAMLS RNWGRIVFIA SESAIMIPKE MIHYGMTKTA QLSVSRGLAE LTRGTAVTVN
AVMPGPTMSE GVQTFVADLA RQNGESEAEA AANFVKQHRP GSLIQRFASV EEVANMVVYV
SSKEASATNG AALRVEGGLI QTIA
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