| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rmet_4076 |
|---|
| Symbol | |
|---|
| ID | 4040934 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Cupriavidus metallidurans CH34 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007974 |
|---|
| Strand | - |
|---|
| Start bp | 644308 |
|---|
| End bp | 645102 |
|---|
| Gene Length | 795 bp |
|---|
| Protein Length | 264 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637979500 |
|---|
| Product | putative short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_586213 |
|---|
| Protein GI | 94313004 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.142044 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACATCG ATCTGTCGGG CAAGACCGCC CTCGTCACCG GTTCCACCGC CGGCATCGGC
TTTGCCACGG CGCGCGGTCT GGCCGAGTCC GGCGCCCACG TGATCGTCAA CGGCCGTAGC
CAGGCCTCGG TCGATAACGC GCTGGCGTCG CTGAAGAAAT CCTATCCCAC CGCCCAGGCC
ACCGGATTCG CAGGCGACCT GACCGACGCT GCCGTCTGCG ACACCCTCGT CAAGACCCAC
CCGGCTGTCG ACATCCTCGT CAACAACCTC GGCATCTTCG AGCCGAAGGA TTTCTTCGAT
ATTCCGGACA GCGACTGGAC ACGCTTTTTC GACGTCAACG TGCTGTCCGG CGTACGCCTC
TCGCGCGCCT ATGCCAAAGG CATGGCCGAG CGCAAATGGG GCCGCATCGT GTTTATCGCG
TCTGAGTCTG GCATCAACAT TCCGGTCGAG ATGATCCACT ACGGCTTCAC CAAGACCGCG
CAGTTGGCGG TCTCGCGCGG TCTGGCCAAG CGGATGGCGG GCACCGGCGT CACGGTGAAC
GCCGTGCTGC CCGGCCCGAC GCTATCCGAA GGCGTGACGG CCATGCTCAA GGATGAAATC
GCGAAATCCG GCAAAAGCGC CGAGGAAGTG GCGGCCGAGT TCGTCAAGGC ACACCGCAGC
ACGTCGATCA TCCAGCGCGC GGCCAGTGTC GAGGAAGTGG CCAACATGAT CGTCTACGTC
TGCTCGCCAC AGGCGTCCGC CACCACCGGG GCGGCCCTGC GCGTTGACGG CGGTGTGGTC
GACACGATCG TGTAA
|
|---|
| Protein sequence | MNIDLSGKTA LVTGSTAGIG FATARGLAES GAHVIVNGRS QASVDNALAS LKKSYPTAQA
TGFAGDLTDA AVCDTLVKTH PAVDILVNNL GIFEPKDFFD IPDSDWTRFF DVNVLSGVRL
SRAYAKGMAE RKWGRIVFIA SESGINIPVE MIHYGFTKTA QLAVSRGLAK RMAGTGVTVN
AVLPGPTLSE GVTAMLKDEI AKSGKSAEEV AAEFVKAHRS TSIIQRAASV EEVANMIVYV
CSPQASATTG AALRVDGGVV DTIV
|
|---|
| |