| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_5789 |
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| Symbol | |
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| ID | 7974910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012792 |
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| Strand | + |
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| Start bp | 491254 |
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| End bp | 492045 |
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| Gene Length | 792 bp |
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| Protein Length | 263 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644796370 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002947644 |
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| Protein GI | 239820459 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGACTTGC AACTCGATGG AAAGCTCGCC CTGGTGAGCG GAAGCACCGC CGGCATCGGC
TTTGCAATTG CGCGCACGCT GGCCCAGGAG GGCGCAAGCG TGATCGTGAA CGGCAGATCG
CAGCCGGCGG TCGACGAGGC GGTGGACCGC ATCCGCTCGG AAACGCAAGG CACGGTGCTC
GGTTATGCCG GGGACCTCAG CCGGGCCGAC GCTGCCGAGG AAGCCGTGCG TCGCCACCCC
GGCATCGGCA TCCTCGTGAA CAACCTGGGC ATCTTCGAGG CCAAGGCCTT CGAAGATATT
CCCGATGAAG ACTGGCAGCG CTTCTTCGAT ATCAACGTGC TGAGCGGCGT TCGTCTCGCG
CGCCTGGTGC TGCCGGAGAT GAAGCGCACA AACTGGGGCC GGATCATCTT CATCTCCAGT
GAAAGCGCGG TGCAGATCCC GACCGAGATG ATTCACTACG GCATGACGAA GACCGCGCAA
CTCGCGGTGT CGCGCGGCCT TGCGGAATCG CTCGCCGGCA CGAACATCAC GGTGAACAGC
GTGCTTCCGG GCCCGACCAG ATCACGCGGC GTCGGCGACT TCGTGGAAGG CATGGCGCGC
TCGAGCGACA AGAGCTTCGA GCAGGTCGAG GCAGAGTTCT TCGACCACGT CCGCCCGACC
TCGCTGATCA AGCGCTTCGC TTCGCCGCAG GAGGTGGCCT CGCTCGTGGC CTACGTGGCA
AGTCCGCTCG CGTCGGCGAC CACGGGTGCG GCCCTGCGCG TCGACGGCGG TGTCGTCAAG
AGCGCCTTCT GA
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| Protein sequence | MDLQLDGKLA LVSGSTAGIG FAIARTLAQE GASVIVNGRS QPAVDEAVDR IRSETQGTVL
GYAGDLSRAD AAEEAVRRHP GIGILVNNLG IFEAKAFEDI PDEDWQRFFD INVLSGVRLA
RLVLPEMKRT NWGRIIFISS ESAVQIPTEM IHYGMTKTAQ LAVSRGLAES LAGTNITVNS
VLPGPTRSRG VGDFVEGMAR SSDKSFEQVE AEFFDHVRPT SLIKRFASPQ EVASLVAYVA
SPLASATTGA ALRVDGGVVK SAF
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