| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3903 |
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| Symbol | |
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| ID | 5714432 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009956 |
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| Strand | - |
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| Start bp | 129663 |
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| End bp | 130460 |
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| Gene Length | 798 bp |
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| Protein Length | 265 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641276816 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001542112 |
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| Protein GI | 159046441 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 40 |
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| Fosmid unclonability p-value | 0.60133 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAATTCG GATTGAAAGG CAAGACAGCC CTGATCACCG GCGGCGCCTC TGGCATCGGC
CGGGAAACCG CGAAGTTTCT GCGCGACGAA GGCGCAAACG TGATCCTCGT GGATCTCAAA
GGCGACAAGG TGGCCGAGGC TGCCGAGGCC CTGGGCGATC GCGCCCATGC CCTCCAGGCC
GACCTGTCGG ACACAGAACA GGCCAACGGC CTGGTTCAGA CCGTCGAGGA GCGGTTCGAG
ATGCCCGATA TCGTGGTCTG CGCCGCCGGT GTGACCGGAG CCAAGGGCCA TCCGCTGGAG
ATGACCGATG CCGACTGGCA CGAAGCATGG AATACCGATT TCATGTCGGT CGTGCGCACC
TTGCGCGGGT TCGTGCCGCG CATGGAAAAG CGCGGTTGGG GCCGCGTGGT AATGGTGGCC
TCCGAGAACG CCGTGCAACC CTATGCGGAC GAAGCGGTCT ACAACGTCGC CAAGGCGGGA
TTGCTGAACT TCGCCAAGGC CCTCAGCCGG GTGACTGCTC CCAACGGTGT GTTGGTCAAC
ACCGTTTCCC CCGCCTTCAT CGAGACCCCG ATGACCGACG GCATGATGGA CCAGCGAGCC
GAGCAAATGG GAACCAGCCG CGACGAGGCG GTCAAGACCT TCCTCGACGA AGAGCGGCCC
TATTTGGAAC TCAAACGCCG CGGCAAACCC GAAGAGGTCG CCGCGACCAT CGCATTCCTG
TGTTCGCAAC AGGCCAGCTT CGTGGTGGGC GCCAACTACC GGGTCGACGG CGGGTCCGTG
GCGACGATGG CGGTTTGA
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| Protein sequence | MEFGLKGKTA LITGGASGIG RETAKFLRDE GANVILVDLK GDKVAEAAEA LGDRAHALQA
DLSDTEQANG LVQTVEERFE MPDIVVCAAG VTGAKGHPLE MTDADWHEAW NTDFMSVVRT
LRGFVPRMEK RGWGRVVMVA SENAVQPYAD EAVYNVAKAG LLNFAKALSR VTAPNGVLVN
TVSPAFIETP MTDGMMDQRA EQMGTSRDEA VKTFLDEERP YLELKRRGKP EEVAATIAFL
CSQQASFVVG ANYRVDGGSV ATMAV
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