More than 300 homologs were found in PanDaTox collection
for query gene Rfer_0897 on replicon NC_007908
Organism: Rhodoferax ferrireducens T118



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_007908  Rfer_0897  response regulator receiver domain-containing protein  100 
 
 		 131 aa  261  2e-69  Rhodoferax ferrireducens T118  Bacteria  normal  0.132459  n/a   
 
 
-
 
NC_013411  GYMC61_3240  two component transcriptional regulator, LuxR family  39.37 
 
 		 224 aa  88.6  3e-17  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011666  Msil_2019  two component transcriptional regulator, LuxR family  37.19 
 
 		 223 aa  86.7  9e-17  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_013946  Mrub_0806  two component LuxR family transcriptional regulator  39.66 
 
 		 216 aa  82.8  0.000000000000001  Meiothermus ruber DSM 1279  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014212  Mesil_2510  two component transcriptional regulator, LuxR family  37.93 
 
 		 217 aa  82.4  0.000000000000002  Meiothermus silvanus DSM 9946  Bacteria  normal  1  normal  1 
 
 
-
 
NC_006348  BMA1736  DNA-binding response regulator NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia mallei ATCC 23344  Bacteria  normal  1  n/a   
 
 
-
 
NC_007434  BURPS1710b_2764  DNA-binding response regulator NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia pseudomallei 1710b  Bacteria  normal  0.922757  n/a   
 
 
-
 
NC_007778  RPB_4035  two component LuxR family transcriptional regulator  38.21 
 
 		 228 aa  82  0.000000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010725  Mpop_4860  two component transcriptional regulator, LuxR family  36.36 
 
 		 236 aa  82  0.000000000000003  Methylobacterium populi BJ001  Bacteria  normal  1  normal  0.142587 
 
 
-
 
NC_009901  Spea_2299  two component LuxR family transcriptional regulator  36.97 
 
 		 221 aa  81.6  0.000000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2246  DNA-binding response regulator NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia mallei SAVP1  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A3072  DNA-binding response regulator NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009074  BURPS668_2630  nitrate/nitrite response regulator protein NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia pseudomallei 668  Bacteria  normal  0.14617  n/a   
 
 
-
 
NC_009076  BURPS1106A_2686  nitrate/nitrite response regulator protein NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_009080  BMA10247_1519  DNA-binding response regulator NarL  42.31 
 
 		 233 aa  81.6  0.000000000000003  Burkholderia mallei NCTC 10247  Bacteria  normal  0.281442  n/a   
 
 
-
 
NC_007651  BTH_I1849  DNA-binding response regulator NarL  42.31 
 
 		 233 aa  81.6  0.000000000000004  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_011666  Msil_2271  two component transcriptional regulator, LuxR family  39.81 
 
 		 223 aa  80.5  0.000000000000008  Methylocella silvestris BL2  Bacteria  n/a    normal  1 
 
 
-
 
NC_007644  Moth_0975  two component LuxR family transcriptional regulator  37.5 
 
 		 222 aa  80.5  0.000000000000008  Moorella thermoacetica ATCC 39073  Bacteria  normal  1  normal  1 
 
 
-
 
NC_014210  Ndas_2780  two component transcriptional regulator, LuxR family  40.38 
 
 		 219 aa  79.7  0.00000000000001  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  0.855193  normal  0.402473 
 
 
-
 
NC_013739  Cwoe_3719  response regulator receiver protein  37.93 
 
 		 117 aa  79.7  0.00000000000001  Conexibacter woesei DSM 14684  Bacteria  normal  0.092296  normal  1 
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  38.4 
 
 		 209 aa  79.3  0.00000000000002  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_009972  Haur_0983  two component LuxR family transcriptional regulator  38.46 
 
 		 213 aa  79.3  0.00000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  1  n/a   
 
 
-
 
NC_011661  Dtur_0239  response regulator receiver protein  31.09 
 
 		 128 aa  79  0.00000000000002  Dictyoglomus turgidum DSM 6724  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_1998  two component transcriptional regulator, LuxR family  42.86 
 
 		 225 aa  79.3  0.00000000000002  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.12496  normal  1 
 
 
-
 
NC_013131  Caci_7658  two component transcriptional regulator, LuxR family  41.35 
 
 		 219 aa  78.6  0.00000000000002  Catenulispora acidiphila DSM 44928  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013093  Amir_2010  two component transcriptional regulator, LuxR family  40.78 
 
 		 214 aa  78.2  0.00000000000003  Actinosynnema mirum DSM 43827  Bacteria  normal  1  n/a   
 
 
-
 
NC_007778  RPB_4449  two component LuxR family transcriptional regulator  33.61 
 
 		 230 aa  78.2  0.00000000000003  Rhodopseudomonas palustris HaA2  Bacteria  normal  1  normal  0.683214 
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  38.4 
 
 		 210 aa  78.6  0.00000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.0171986 
 
 
-
 
NC_012918  GM21_1103  two component transcriptional regulator, LuxR family  37.4 
 
 		 216 aa  78.2  0.00000000000004  Geobacter sp. M21  Bacteria  n/a    normal  1 
 
 
-
 
NC_006274  BCZK1321  response regulator  35.71 
 
 		 210 aa  78.2  0.00000000000004  Bacillus cereus E33L  Bacteria  hitchhiker  0.00000332221  n/a   
 
 
-
 
NC_007958  RPD_2401  response regulator receiver  34.4 
 
 		 230 aa  78.2  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0808908 
 
 
-
 
NC_007958  RPD_3789  response regulator receiver  35.2 
 
 		 228 aa  78.2  0.00000000000004  Rhodopseudomonas palustris BisB5  Bacteria  normal  1  normal  0.0916709 
 
 
-
 
NC_008699  Noca_1020  response regulator receiver  37.61 
 
 		 218 aa  78.2  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  0.648692  n/a   
 
 
-
 
NC_010623  Bphy_4331  two component LuxR family transcriptional regulator  34.92 
 
 		 212 aa  77.8  0.00000000000004  Burkholderia phymatum STM815  Bacteria  normal  0.748519  normal  1 
 
 
-
 
NC_011004  Rpal_1676  two component transcriptional regulator, LuxR family  35.2 
 
 		 228 aa  77.8  0.00000000000004  Rhodopseudomonas palustris TIE-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_011071  Smal_1884  response regulator receiver protein  32.48 
 
 		 125 aa  77.8  0.00000000000005  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  0.751775 
 
 
-
 
NC_002939  GSU0254  LuxR family DNA-binding response regulator  38.74 
 
 		 215 aa  77.8  0.00000000000005  Geobacter sulfurreducens PCA  Bacteria  normal  1  n/a   
 
 
-
 
NC_009654  Mmwyl1_0679  two component LuxR family transcriptional regulator  35.38 
 
 		 213 aa  77.8  0.00000000000005  Marinomonas sp. MWYL1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  37.6 
 
 		 210 aa  77.4  0.00000000000006  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_004578  PSPTO_0560  DNA-binding response regulator, LuxR family  37.6 
 
 		 209 aa  77.4  0.00000000000007  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  35.83 
 
 		 206 aa  77.4  0.00000000000007  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_004116  SAG0322  DNA-binding response regulator  37.29 
 
 		 213 aa  77  0.00000000000008  Streptococcus agalactiae 2603V/R  Bacteria  normal  1  n/a   
 
 
-
 
NC_012669  Bcav_0102  two component transcriptional regulator, LuxR family  40.35 
 
 		 221 aa  77  0.00000000000008  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.0637251  normal  1 
 
 
-
 
NC_007760  Adeh_1997  two component LuxR family transcriptional regulator  36.89 
 
 		 218 aa  76.6  0.00000000000009  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  1  n/a   
 
 
-
 
NC_011757  Mchl_4712  two component transcriptional regulator, LuxR family  34.71 
 
 		 236 aa  77  0.00000000000009  Methylobacterium chloromethanicum CM4  Bacteria  normal  0.37561  normal  1 
 
 
-
 
NC_010172  Mext_4343  response regulator receiver  34.71 
 
 		 236 aa  77  0.00000000000009  Methylobacterium extorquens PA1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007333  Tfu_1845  LuxR response regulator receiver  39.42 
 
 		 215 aa  76.3  0.0000000000001  Thermobifida fusca YX  Bacteria  hitchhiker  0.00433344  n/a   
 
 
-
 
NC_011071  Smal_1099  two component transcriptional regulator, LuxR family  35.48 
 
 		 213 aa  76.3  0.0000000000001  Stenotrophomonas maltophilia R551-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009441  Fjoh_4628  two component LuxR family transcriptional regulator  31.78 
 
 		 219 aa  76.3  0.0000000000001  Flavobacterium johnsoniae UW101  Bacteria  normal  1  n/a   
 
 
-
 
NC_009664  Krad_4263  two component transcriptional regulator, LuxR family  37.7 
 
 		 230 aa  76.6  0.0000000000001  Kineococcus radiotolerans SRS30216  Bacteria  normal  1  normal  0.455968 
 
 
-
 
NC_008009  Acid345_4290  two component LuxR family transcriptional regulator  33.87 
 
 		 218 aa  76.6  0.0000000000001  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008532  STER_1387  DNA-binding response regulator  35.59 
 
 		 214 aa  76.6  0.0000000000001  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.00141106  n/a   
 
 
-
 
NC_010571  Oter_4533  response regulator receiver protein  36.89 
 
 		 151 aa  75.9  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  0.611447  normal  1 
 
 
-
 
NC_013595  Sros_7211  response regulator receiver protein  37.5 
 
 		 215 aa  75.5  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  1  normal  0.0769384 
 
 
-
 
NC_011145  AnaeK_1881  two component transcriptional regulator, LuxR family  35.45 
 
 		 218 aa  75.5  0.0000000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.0160211  n/a   
 
 
-
 
NC_007005  Psyr_4618  LuxR response regulator receiver  37.6 
 
 		 209 aa  75.5  0.0000000000002  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.601025 
 
 
-
 
NC_011891  A2cp1_1966  two component transcriptional regulator, LuxR family  35.45 
 
 		 218 aa  75.5  0.0000000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_8800  response regulator receiver protein  40.78 
 
 		 215 aa  75.9  0.0000000000002  Streptosporangium roseum DSM 43021  Bacteria  normal  0.752334  normal  1 
 
 
-
 
NC_013521  Sked_06600  response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain  38.52 
 
 		 200 aa  75.5  0.0000000000002  Sanguibacter keddieii DSM 10542  Bacteria  normal  0.680692  normal  1 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  35.2 
 
 		 215 aa  75.5  0.0000000000002  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal  1 
 
 
-
 
NC_010571  Oter_2496  two component LuxR family transcriptional regulator  35.29 
 
 		 212 aa  75.5  0.0000000000002  Opitutus terrae PB90-1  Bacteria  normal  1  normal  0.996792 
 
 
-
 
NC_009831  Ssed_0905  putative nitrate/nitrite DNA-binding response regulator  37.21 
 
 		 206 aa  75.5  0.0000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  0.0826046  hitchhiker  0.00000533581 
 
 
-
 
NC_010717  PXO_00994  response regulator  31.36 
 
 		 126 aa  75.9  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  0.500035  n/a   
 
 
-
 
NC_010717  PXO_06172  response regulator  31.36 
 
 		 126 aa  75.9  0.0000000000002  Xanthomonas oryzae pv. oryzae PXO99A  Bacteria  normal  1  n/a   
 
 
-
 
NC_011831  Cagg_1346  two component transcriptional regulator, LuxR family  35.54 
 
 		 236 aa  75.1  0.0000000000003  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.361751  hitchhiker  0.00000337078 
 
 
-
 
NC_003909  BCE_1563  DNA-binding response regulator  34.82 
 
 		 210 aa  75.1  0.0000000000003  Bacillus cereus ATCC 10987  Bacteria  hitchhiker  0.0000000942452  n/a   
 
 
-
 
NC_005945  BAS1348  DNA-binding response regulator  34.82 
 
 		 210 aa  75.1  0.0000000000003  Bacillus anthracis str. Sterne  Bacteria  hitchhiker  0.0000440829  n/a   
 
 
-
 
NC_005957  BT9727_1322  response regulator  34.82 
 
 		 210 aa  75.1  0.0000000000003  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  7.30192e-17  n/a   
 
 
-
 
NC_007530  GBAA_1457  DNA-binding response regulator  34.82 
 
 		 210 aa  75.1  0.0000000000003  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  hitchhiker  0.0000538049  n/a   
 
 
-
 
NC_011658  BCAH187_A1601  DNA-binding response regulator  34.82 
 
 		 210 aa  75.1  0.0000000000003  Bacillus cereus AH187  Bacteria  unclonable  0.00000000136266  n/a   
 
 
-
 
NC_011725  BCB4264_A1495  DNA-binding response regulator  34.82 
 
 		 210 aa  74.7  0.0000000000003  Bacillus cereus B4264  Bacteria  unclonable  0.0000174821  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1363  two component LuxR family transcriptional regulator  34.82 
 
 		 210 aa  75.1  0.0000000000003  Bacillus weihenstephanensis KBAB4  Bacteria  hitchhiker  0.0039551  n/a   
 
 
-
 
NC_011830  Dhaf_1205  two component transcriptional regulator, LuxR family  37.86 
 
 		 212 aa  74.7  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_1260  putative nitrate/nitrite DNA-binding response regulator  36.8 
 
 		 206 aa  74.7  0.0000000000004  Colwellia psychrerythraea 34H  Bacteria  normal  1  n/a   
 
 
-
 
NC_007333  Tfu_2491  LuxR response regulator receiver  41.44 
 
 		 242 aa  74.7  0.0000000000004  Thermobifida fusca YX  Bacteria  normal  0.470277  n/a   
 
 
-
 
NC_011830  Dhaf_1194  two component transcriptional regulator, LuxR family  37.19 
 
 		 217 aa  74.7  0.0000000000004  Desulfitobacterium hafniense DCB-2  Bacteria  normal  0.272513  n/a   
 
 
-
 
NC_007947  Mfla_0815  two component LuxR family transcriptional regulator  37.14 
 
 		 213 aa  74.3  0.0000000000004  Methylobacillus flagellatus KT  Bacteria  hitchhiker  0.00000180305  normal  1 
 
 
-
 
NC_008255  CHU_1266  two-component response regulator  32.03 
 
 		 227 aa  74.7  0.0000000000004  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  0.847879  normal  0.913346 
 
 
-
 
NC_013235  Namu_0651  two component transcriptional regulator, LuxR family  44.64 
 
 		 241 aa  74.7  0.0000000000004  Nakamurella multipartita DSM 44233  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010320  Teth514_2042  two component LuxR family transcriptional regulator  29.46 
 
 		 208 aa  74.7  0.0000000000004  Thermoanaerobacter sp. X514  Bacteria  normal  1  n/a   
 
 
-
 
NC_013411  GYMC61_1316  two component transcriptional regulator, LuxR family  37.5 
 
 		 210 aa  74.3  0.0000000000005  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_3043  two component transcriptional regulator, LuxR family  36.22 
 
 		 225 aa  74.3  0.0000000000005  Geobacillus sp. WCH70  Bacteria  decreased coverage  0.0000000652561  n/a   
 
 
-
 
NC_009439  Pmen_4004  two component LuxR family transcriptional regulator  39.2 
 
 		 209 aa  74.3  0.0000000000005  Pseudomonas mendocina ymp  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009767  Rcas_4228  response regulator receiver protein  33.6 
 
 		 126 aa  74.3  0.0000000000005  Roseiflexus castenholzii DSM 13941  Bacteria  normal  1  normal  0.987828 
 
 
-
 
NC_009675  Anae109_1810  two component LuxR family transcriptional regulator  32.79 
 
 		 218 aa  73.9  0.0000000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009012  Cthe_1267  two component LuxR family transcriptional regulator  33.98 
 
 		 216 aa  73.9  0.0000000000006  Clostridium thermocellum ATCC 27405  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_6161  response regulator receiver protein  36.54 
 
 		 221 aa  73.9  0.0000000000007  Streptosporangium roseum DSM 43021  Bacteria  normal  0.902987  decreased coverage  0.000109123 
 
 
-
 
NC_009485  BBta_6075  two-component response regulator  35.29 
 
 		 216 aa  73.6  0.0000000000008  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011772  BCG9842_B3849  DNA-binding response regulator  33.93 
 
 		 210 aa  73.6  0.0000000000009  Bacillus cereus G9842  Bacteria  decreased coverage  0.0000000308683  hitchhiker  0.000000000350245 
 
 
-
 
NC_008825  Mpe_A0357  two-component response regulator  35.09 
 
 		 210 aa  73.6  0.0000000000009  Methylibium petroleiphilum PM1  Bacteria  hitchhiker  0.00848176  normal  1 
 
 
-
 
NC_004116  SAG0719  DNA-binding response regulator  39.29 
 
 		 236 aa  72.8  0.000000000001  Streptococcus agalactiae 2603V/R  Bacteria  normal  0.0951718  n/a   
 
 
-
 
NC_009485  BBta_3079  two component LuxR family transcriptional regulator  34.55 
 
 		 233 aa  73.2  0.000000000001  Bradyrhizobium sp. BTAi1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007347  Reut_A1146  response regulator receiver  34.4 
 
 		 209 aa  73.2  0.000000000001  Ralstonia eutropha JMP134  Bacteria  normal  1  n/a   
 
 
-
 
NC_013595  Sros_4672  response regulator receiver protein  37.5 
 
 		 212 aa  72.8  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.223352  normal  0.339353 
 
 
-
 
NC_013595  Sros_1523  response regulator receiver protein  39.52 
 
 		 215 aa  72.8  0.000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.894169  normal  0.0152488 
 
 
-
 
NC_011773  BCAH820_1531  DNA-binding response regulator  33.93 
 
 		 210 aa  73.2  0.000000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  8.64189e-24 
 
 
-
 
NC_007947  Mfla_1714  two component LuxR family transcriptional regulator  35.04 
 
 		 213 aa  73.2  0.000000000001  Methylobacillus flagellatus KT  Bacteria  normal  0.975164  hitchhiker  0.000785935 
 
 
-
 
NC_007973  Rmet_2087  two component LuxR family transcriptional regulator  37.5 
 
 		 217 aa  72.8  0.000000000001  Cupriavidus metallidurans CH34  Bacteria  normal  1  normal  0.332036 
 
 
-
 
NC_013530  Xcel_1618  two component transcriptional regulator, LuxR family  34.17 
 
 		 220 aa  72.8  0.000000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_008009  Acid345_4062  response regulator receiver protein  36.67 
 
 		 129 aa  72  0.000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  0.259152  normal  0.0683436 
 
 
-
 
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