| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pmen_4004 |
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| Symbol | |
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| ID | 5110227 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas mendocina ymp |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009439 |
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| Strand | - |
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| Start bp | 4378048 |
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| End bp | 4378677 |
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| Gene Length | 630 bp |
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| Protein Length | 209 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 640505267 |
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| Product | two component LuxR family transcriptional regulator |
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| Protein accession | YP_001189483 |
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| Protein GI | 146309018 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATTCGGG TACTGGTGGC CGAAGACCAC ACCATCGTGC GGGAAGGCAT CAAGCAACTG
ATCGGCATGG CCCGCGATCT TGAGGTGGCG GGCGAGGCGT GCAACGGCGA ACAGCTGCTC
GAGGTGCTGC GCCGTACGCC TTGCGACGTG GTGCTGCTGG ATATCTCCAT GCCGGGCGTC
AACGGTCTGG AGGCCATTCC GCGCATTCGC GCGCTGACCG AGGCGCCGGC GATTCTGGTG
CTGTCGATGC ACGACGAGGC GCAGATGGCG GCCCGTGCGC TCAAGGCTGG GGCCGCCGGT
TACGCCACCA AGGACAGCGA CCCGGCGCTG CTGATCACCG CGATTCGCAA GGTGGCCAGC
GGTGGTCGCT ATATCGACCC GGCCCTGGCC GATCGCATGG TTTTCGAGGT TGGCCTGACC
GACTCGCGCC CGCCTCATGC ACAACTGTCC GAGCGCGAGT TCTCGGTATT CGAGCGTCTG
GTACGAGGGG AGGGCGTCAA CGATATTGCC CTGCACCTGG CGATCAGCAA CAAGACCGTG
AGCACGCACA AGGCGCGCCT GATGCAGAAG CTAGGCGCCC ATTCGATGGC CGATCTGGTG
CGCTACGCCA TGGAGCACCG TCTGGTCTGA
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| Protein sequence | MIRVLVAEDH TIVREGIKQL IGMARDLEVA GEACNGEQLL EVLRRTPCDV VLLDISMPGV
NGLEAIPRIR ALTEAPAILV LSMHDEAQMA ARALKAGAAG YATKDSDPAL LITAIRKVAS
GGRYIDPALA DRMVFEVGLT DSRPPHAQLS EREFSVFERL VRGEGVNDIA LHLAISNKTV
STHKARLMQK LGAHSMADLV RYAMEHRLV
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