More than 300 homologs were found in PanDaTox collection
for query gene Pmen_4004 on replicon NC_009439
Organism: Pseudomonas mendocina ymp



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009439  Pmen_4004  two component LuxR family transcriptional regulator  100 
 
 
209 aa  419  1e-116  Pseudomonas mendocina ymp  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_07840  putative two-component response regulator  87.08 
 
 
210 aa  369  1e-101  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.0171986 
 
 
-
 
NC_009656  PSPA7_0745  putative two-component response regulator  87.08 
 
 
210 aa  368  1e-101  Pseudomonas aeruginosa PA7  Bacteria  normal  0.536324  n/a   
 
 
-
 
NC_007492  Pfl01_5126  two component LuxR family transcriptional regulator  82.3 
 
 
209 aa  351  4e-96  Pseudomonas fluorescens Pf0-1  Bacteria  normal  0.135043  normal  0.384971 
 
 
-
 
NC_004578  PSPTO_0560  DNA-binding response regulator, LuxR family  82.3 
 
 
209 aa  350  7e-96  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_007005  Psyr_4618  LuxR response regulator receiver  81.82 
 
 
209 aa  348  4e-95  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.601025 
 
 
-
 
NC_009512  Pput_0444  two component LuxR family transcriptional regulator  83.25 
 
 
209 aa  335  1.9999999999999998e-91  Pseudomonas putida F1  Bacteria  normal  normal  0.577588 
 
 
-
 
NC_010322  PputGB1_0441  two component LuxR family transcriptional regulator  83.25 
 
 
209 aa  335  1.9999999999999998e-91  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_0410  LuxR family two component transcriptional regulator  82.78 
 
 
209 aa  335  3.9999999999999995e-91  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4792  two component LuxR family transcriptional regulator  81.34 
 
 
209 aa  325  2.0000000000000001e-88  Pseudomonas putida W619  Bacteria  normal  normal  0.951072 
 
 
-
 
NC_010625  Bphy_6558  two component LuxR family transcriptional regulator  54.07 
 
 
210 aa  226  2e-58  Burkholderia phymatum STM815  Bacteria  normal  normal  0.458284 
 
 
-
 
NC_010676  Bphyt_6235  two component transcriptional regulator, LuxR family  54.07 
 
 
210 aa  224  7e-58  Burkholderia phytofirmans PsJN  Bacteria  normal  normal  0.612124 
 
 
-
 
NC_010627  Bphy_7764  two component LuxR family transcriptional regulator  51.2 
 
 
210 aa  219  3e-56  Burkholderia phymatum STM815  Bacteria  normal  0.527093  normal 
 
 
-
 
NC_007404  Tbd_1290  two component LuxR family transcriptional regulator  54.55 
 
 
209 aa  211  4.9999999999999996e-54  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.542915  normal 
 
 
-
 
NC_012912  Dd1591_1895  two component transcriptional regulator, LuxR family  49.76 
 
 
213 aa  198  3.9999999999999996e-50  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4248  two component LuxR family transcriptional regulator  46.89 
 
 
215 aa  194  6e-49  Burkholderia ambifaria MC40-6  Bacteria  normal  0.206342  normal 
 
 
-
 
NC_008391  Bamb_3774  two component LuxR family transcriptional regulator  46.89 
 
 
215 aa  194  6e-49  Burkholderia ambifaria AMMD  Bacteria  normal  normal  0.329832 
 
 
-
 
NC_010524  Lcho_0901  two component LuxR family transcriptional regulator  49.76 
 
 
235 aa  194  9e-49  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_007511  Bcep18194_B1652  two component LuxR family transcriptional regulator  46.89 
 
 
215 aa  193  1e-48  Burkholderia sp. 383  Bacteria  normal  0.187578  normal  0.308689 
 
 
-
 
NC_008781  Pnap_0790  two component LuxR family transcriptional regulator  45.15 
 
 
214 aa  193  1e-48  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.870503  normal  0.997505 
 
 
-
 
NC_010086  Bmul_4256  two component LuxR family transcriptional regulator  46.89 
 
 
215 aa  194  1e-48  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.282152  normal 
 
 
-
 
NC_012917  PC1_2202  two component transcriptional regulator, LuxR family  47.6 
 
 
213 aa  192  3e-48  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1400  two component LuxR family transcriptional regulator  47.34 
 
 
216 aa  191  5e-48  Dechloromonas aromatica RCB  Bacteria  normal  0.973321  normal  0.0605156 
 
 
-
 
NC_010676  Bphyt_5584  two component transcriptional regulator, LuxR family  46.41 
 
 
215 aa  191  5e-48  Burkholderia phytofirmans PsJN  Bacteria  normal  0.282667  normal 
 
 
-
 
NC_008786  Veis_0032  two component LuxR family transcriptional regulator  44.98 
 
 
210 aa  191  6e-48  Verminephrobacter eiseniae EF01-2  Bacteria  normal  0.245451  normal 
 
 
-
 
NC_007650  BTH_II1247  LuxR family DNA-binding response regulator  46.15 
 
 
215 aa  191  6e-48  Burkholderia thailandensis E264  Bacteria  normal  0.32702  n/a   
 
 
-
 
NC_007974  Rmet_4516  two component LuxR family transcriptional regulator  50 
 
 
214 aa  191  6e-48  Cupriavidus metallidurans CH34  Bacteria  normal  0.0463384  normal  0.0270495 
 
 
-
 
NC_010625  Bphy_7047  two component LuxR family transcriptional regulator  47.12 
 
 
215 aa  191  7e-48  Burkholderia phymatum STM815  Bacteria  normal  normal  0.976007 
 
 
-
 
NC_010515  Bcenmc03_5989  two component LuxR family transcriptional regulator  46.41 
 
 
215 aa  189  2.9999999999999997e-47  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_4365  two component LuxR family transcriptional regulator  46.41 
 
 
215 aa  189  2.9999999999999997e-47  Burkholderia cenocepacia HI2424  Bacteria  normal  0.902614  normal 
 
 
-
 
NC_008061  Bcen_4002  two component LuxR family transcriptional regulator  46.41 
 
 
215 aa  189  4e-47  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1551  LuxR family DNA-binding response regulator  45.67 
 
 
215 aa  187  8e-47  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0127  LuxR family DNA-binding response regulator  45.67 
 
 
215 aa  187  8e-47  Burkholderia pseudomallei 1710b  Bacteria  normal  0.914848  n/a   
 
 
-
 
NC_009075  BURPS668_A1634  LuxR family DNA-binding response regulator  45.67 
 
 
215 aa  187  8e-47  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_1137  two component LuxR family transcriptional regulator  45.45 
 
 
214 aa  187  9e-47  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_009075  BURPS668_A1228  LuxR family DNA-binding response regulator  45.93 
 
 
215 aa  186  1e-46  Burkholderia pseudomallei 668  Bacteria  normal  0.0904383  n/a   
 
 
-
 
NC_008752  Aave_3862  two component LuxR family transcriptional regulator  43.06 
 
 
210 aa  186  3e-46  Acidovorax citrulli AAC00-1  Bacteria  normal  0.734244  normal 
 
 
-
 
NC_010625  Bphy_5813  two component LuxR family transcriptional regulator  47.39 
 
 
215 aa  186  3e-46  Burkholderia phymatum STM815  Bacteria  normal  normal  0.118405 
 
 
-
 
NC_010002  Daci_1809  two component LuxR family transcriptional regulator  44.98 
 
 
210 aa  186  3e-46  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_008835  BMA10229_0760  LuxR family DNA-binding response regulator  45.45 
 
 
215 aa  185  5e-46  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0703  LuxR family DNA-binding response regulator  45.45 
 
 
215 aa  185  5e-46  Burkholderia mallei ATCC 23344  Bacteria  normal  0.533722  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1154  LuxR family DNA-binding response regulator  45.45 
 
 
215 aa  185  5e-46  Burkholderia pseudomallei 1106a  Bacteria  normal  0.324728  n/a   
 
 
-
 
NC_009079  BMA10247_A1725  LuxR family DNA-binding response regulator  45.45 
 
 
215 aa  185  5e-46  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_003295  RSc0292  response regulator transcription regulator protein  45.45 
 
 
210 aa  184  6e-46  Ralstonia solanacearum GMI1000  Bacteria  normal  normal 
 
 
-
 
NC_010557  BamMC406_6196  two component LuxR family transcriptional regulator  45.19 
 
 
215 aa  184  8e-46  Burkholderia ambifaria MC40-6  Bacteria  normal  0.280791  normal  0.522243 
 
 
-
 
NC_007650  BTH_II1570  LuxR family DNA-binding response regulator  44.98 
 
 
215 aa  183  1.0000000000000001e-45  Burkholderia thailandensis E264  Bacteria  normal  0.17909  n/a   
 
 
-
 
NC_010676  Bphyt_6314  two component transcriptional regulator, LuxR family  45.45 
 
 
216 aa  183  1.0000000000000001e-45  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_4296  two component LuxR family transcriptional regulator  50 
 
 
214 aa  184  1.0000000000000001e-45  Polaromonas sp. JS666  Bacteria  normal  0.891496  normal 
 
 
-
 
NC_007973  Rmet_0090  two component LuxR family transcriptional regulator  45.45 
 
 
210 aa  183  1.0000000000000001e-45  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011992  Dtpsy_2832  two component transcriptional regulator, LuxR family  42.58 
 
 
210 aa  183  2.0000000000000003e-45  Acidovorax ebreus TPSY  Bacteria  normal  0.988429  n/a   
 
 
-
 
NC_007435  BURPS1710b_A2427  LuxR family DNA-binding response regulator  45.45 
 
 
282 aa  183  2.0000000000000003e-45  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4108  two component transcriptional regulator, LuxR family  43.06 
 
 
210 aa  182  2.0000000000000003e-45  Variovorax paradoxus S110  Bacteria  normal  0.755468  n/a   
 
 
-
 
NC_010682  Rpic_0145  two component transcriptional regulator, LuxR family  45.45 
 
 
210 aa  182  2.0000000000000003e-45  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008782  Ajs_3509  two component LuxR family transcriptional regulator  42.58 
 
 
239 aa  183  2.0000000000000003e-45  Acidovorax sp. JS42  Bacteria  normal  0.325902  normal 
 
 
-
 
NC_012856  Rpic12D_0153  two component transcriptional regulator, LuxR family  45.45 
 
 
210 aa  181  5.0000000000000004e-45  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007951  Bxe_A1850  two component LuxR family transcriptional regulator  44.98 
 
 
216 aa  181  5.0000000000000004e-45  Burkholderia xenovorans LB400  Bacteria  normal  normal 
 
 
-
 
NC_007948  Bpro_1167  two component LuxR family transcriptional regulator  49.04 
 
 
213 aa  181  6e-45  Polaromonas sp. JS666  Bacteria  normal  normal 
 
 
-
 
NC_007347  Reut_A1216  two component LuxR family transcriptional regulator  47.6 
 
 
215 aa  181  7e-45  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1572  two component LuxR family transcriptional regulator  44.76 
 
 
218 aa  178  5.999999999999999e-44  Dechloromonas aromatica RCB  Bacteria  normal  normal  0.972408 
 
 
-
 
NC_007614  Nmul_A1235  two component LuxR family transcriptional regulator  41.15 
 
 
211 aa  176  2e-43  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_010087  Bmul_5903  two component LuxR family transcriptional regulator  43.27 
 
 
215 aa  176  2e-43  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.68975  normal  0.398777 
 
 
-
 
NC_007347  Reut_A0121  two component LuxR family transcriptional regulator  44.02 
 
 
210 aa  175  4e-43  Ralstonia eutropha JMP134  Bacteria  normal  0.830531  n/a   
 
 
-
 
NC_007511  Bcep18194_B2520  two component LuxR family transcriptional regulator  45.24 
 
 
214 aa  175  5e-43  Burkholderia sp. 383  Bacteria  normal  0.943169  normal  0.310419 
 
 
-
 
NC_010524  Lcho_1402  two component LuxR family transcriptional regulator  42.79 
 
 
211 aa  174  6e-43  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_010515  Bcenmc03_3925  two component LuxR family transcriptional regulator  44.71 
 
 
215 aa  172  1.9999999999999998e-42  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_008543  Bcen2424_3595  two component LuxR family transcriptional regulator  45.24 
 
 
215 aa  173  1.9999999999999998e-42  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_008391  Bamb_5330  two component LuxR family transcriptional regulator  45.71 
 
 
215 aa  172  3.9999999999999995e-42  Burkholderia ambifaria AMMD  Bacteria  normal  0.858277  normal 
 
 
-
 
NC_007948  Bpro_0881  two component LuxR family transcriptional regulator  40.19 
 
 
210 aa  171  6.999999999999999e-42  Polaromonas sp. JS666  Bacteria  normal  0.464883  normal  0.594453 
 
 
-
 
NC_012857  Rpic12D_4559  two component transcriptional regulator, LuxR family  46.05 
 
 
215 aa  171  9e-42  Ralstonia pickettii 12D  Bacteria  normal  0.0669727  normal  0.0839611 
 
 
-
 
NC_010678  Rpic_4426  two component transcriptional regulator, LuxR family  46.05 
 
 
215 aa  171  9e-42  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_003295  RSc0192  response regulator transcription regulator protein  46.15 
 
 
215 aa  170  2e-41  Ralstonia solanacearum GMI1000  Bacteria  normal  normal  0.028731 
 
 
-
 
NC_010681  Bphyt_0374  two component transcriptional regulator, LuxR family  41.71 
 
 
218 aa  168  5e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_0922  two component LuxR family transcriptional regulator  39.71 
 
 
210 aa  168  6e-41  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.114328  normal 
 
 
-
 
NC_010681  Bphyt_2656  two component transcriptional regulator, LuxR family  43.06 
 
 
210 aa  167  9e-41  Burkholderia phytofirmans PsJN  Bacteria  normal  0.756738  normal  0.520546 
 
 
-
 
NC_007517  Gmet_2158  two component LuxR family transcriptional regulator  41.15 
 
 
210 aa  166  2e-40  Geobacter metallireducens GS-15  Bacteria  normal  normal  0.0301144 
 
 
-
 
NC_010622  Bphy_1508  two component LuxR family transcriptional regulator  42.72 
 
 
236 aa  166  2e-40  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_008752  Aave_4382  two component LuxR family transcriptional regulator  40.67 
 
 
209 aa  166  2.9999999999999998e-40  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_010622  Bphy_0097  two component LuxR family transcriptional regulator  42.45 
 
 
218 aa  164  1.0000000000000001e-39  Burkholderia phymatum STM815  Bacteria  normal  0.605108  normal 
 
 
-
 
NC_007951  Bxe_A4347  two component LuxR family transcriptional regulator  40.28 
 
 
218 aa  164  1.0000000000000001e-39  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.705126 
 
 
-
 
NC_010524  Lcho_0242  two component LuxR family transcriptional regulator  45.24 
 
 
211 aa  164  1.0000000000000001e-39  Leptothrix cholodnii SP-6  Bacteria  n/a    decreased coverage  0.000159114 
 
 
-
 
NC_008825  Mpe_A2902  two component LuxR family transcriptional regulator  40.67 
 
 
212 aa  164  1.0000000000000001e-39  Methylibium petroleiphilum PM1  Bacteria  normal  0.255362  normal 
 
 
-
 
NC_010002  Daci_0651  two component LuxR family transcriptional regulator  41.63 
 
 
209 aa  163  2.0000000000000002e-39  Delftia acidovorans SPH-1  Bacteria  normal  normal  0.713834 
 
 
-
 
NC_008228  Patl_2450  two component LuxR family transcriptional regulator  40 
 
 
214 aa  163  2.0000000000000002e-39  Pseudoalteromonas atlantica T6c  Bacteria  hitchhiker  0.00539256  n/a   
 
 
-
 
NC_010508  Bcenmc03_3074  two component LuxR family transcriptional regulator  42.45 
 
 
218 aa  162  3e-39  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_0945  two component LuxR family transcriptional regulator  38.76 
 
 
210 aa  162  3e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_1089  two component LuxR family transcriptional regulator  38.76 
 
 
210 aa  162  3e-39  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_008060  Bcen_2441  two component LuxR family transcriptional regulator  42.45 
 
 
218 aa  162  3e-39  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_008542  Bcen2424_3055  two component LuxR family transcriptional regulator  42.45 
 
 
218 aa  162  3e-39  Burkholderia cenocepacia HI2424  Bacteria  normal  0.327843  n/a   
 
 
-
 
NC_007951  Bxe_A1460  two component LuxR family transcriptional regulator  41.63 
 
 
210 aa  161  8.000000000000001e-39  Burkholderia xenovorans LB400  Bacteria  normal  0.39219  normal  0.352919 
 
 
-
 
NC_008576  Mmc1_2093  two component LuxR family transcriptional regulator  43.54 
 
 
206 aa  161  8.000000000000001e-39  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.000328625  normal  0.180863 
 
 
-
 
NC_008786  Veis_2180  two component LuxR family transcriptional regulator  41.15 
 
 
209 aa  160  1e-38  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.876214 
 
 
-
 
NC_009076  BURPS1106A_0243  LuxR family DNA-binding response regulator  39.81 
 
 
218 aa  160  2e-38  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_0425  LuxR family DNA-binding response regulator  39.81 
 
 
218 aa  160  2e-38  Burkholderia pseudomallei 1710b  Bacteria  normal  0.0536791  n/a   
 
 
-
 
NC_007651  BTH_I0209  LuxR family DNA-binding response regulator  40.76 
 
 
218 aa  159  2e-38  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3391  LuxR family DNA-binding response regulator  39.81 
 
 
218 aa  160  2e-38  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_0231  LuxR family DNA-binding response regulator  39.81 
 
 
218 aa  160  2e-38  Burkholderia pseudomallei 668  Bacteria  normal  0.214964  n/a   
 
 
-
 
NC_008785  BMASAVP1_A2955  LuxR family DNA-binding response regulator  39.81 
 
 
218 aa  160  2e-38  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A2133  LuxR family DNA-binding response regulator  39.81 
 
 
218 aa  160  2e-38  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_008825  Mpe_A3494  two component LuxR family transcriptional regulator  40.62 
 
 
226 aa  159  3e-38  Methylibium petroleiphilum PM1  Bacteria  normal  0.514045  normal 
 
 
-
 
NC_010084  Bmul_3052  two component LuxR family transcriptional regulator  42.45 
 
 
218 aa  159  4e-38  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.317078  normal 
 
 
-
 
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