200 homologs were found in PanDaTox collection
for query gene RSP_0812 on replicon NC_007493
Organism: Rhodobacter sphaeroides 2.4.1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007493  RSP_0812  methylmalonyl-CoA epimerase  100 
 
 
134 aa  269  9e-72  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2469  glyoxalase/bleomycin resistance protein/dioxygenase  99.25 
 
 
134 aa  268  2.9999999999999997e-71  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.186921 
 
 
-
 
NC_009428  Rsph17025_0368  methylmalonyl-CoA epimerase  94.78 
 
 
134 aa  259  1e-68  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.528801  normal  0.892682 
 
 
-
 
NC_008044  TM1040_0637  methylmalonyl-CoA epimerase  91.04 
 
 
134 aa  250  6e-66  Ruegeria sp. TM1040  Bacteria  normal  normal  0.355591 
 
 
-
 
NC_007802  Jann_3164  methylmalonyl-CoA epimerase  91.04 
 
 
134 aa  248  2e-65  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_009952  Dshi_2630  putative glyoxalase  90.3 
 
 
134 aa  248  3e-65  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0581567 
 
 
-
 
NC_008686  Pden_2178  glyoxalase/bleomycin resistance protein/dioxygenase  86.57 
 
 
134 aa  243  6.999999999999999e-64  Paracoccus denitrificans PD1222  Bacteria  normal  0.794327  normal 
 
 
-
 
NC_007643  Rru_A1572  methylmalonyl-CoA epimerase  81.2 
 
 
134 aa  222  1e-57  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.99694  n/a   
 
 
-
 
NC_009636  Smed_0906  methylmalonyl-CoA epimerase  75.37 
 
 
134 aa  217  3.9999999999999997e-56  Sinorhizobium medicae WSM419  Bacteria  normal  0.61726  normal 
 
 
-
 
NC_009720  Xaut_4617  methylmalonyl-CoA epimerase  78.2 
 
 
134 aa  216  7.999999999999999e-56  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0621953 
 
 
-
 
NC_010725  Mpop_1003  methylmalonyl-CoA epimerase  75.37 
 
 
134 aa  214  4e-55  Methylobacterium populi BJ001  Bacteria  normal  0.0862504  normal  0.205859 
 
 
-
 
NC_012850  Rleg_1369  methylmalonyl-CoA epimerase  75.19 
 
 
134 aa  213  7e-55  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1277  methylmalonyl-CoA epimerase  75.94 
 
 
134 aa  213  7e-55  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.149828  normal  0.902197 
 
 
-
 
NC_004310  BR0818  glyoxalase family protein  76.87 
 
 
134 aa  213  8e-55  Brucella suis 1330  Bacteria  normal  0.688033  n/a   
 
 
-
 
NC_011757  Mchl_1198  methylmalonyl-CoA epimerase  74.63 
 
 
134 aa  213  8e-55  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1069  methylmalonyl-CoA epimerase  74.63 
 
 
134 aa  213  8e-55  Methylobacterium extorquens PA1  Bacteria  normal  0.17549  normal  0.247158 
 
 
-
 
NC_010505  Mrad2831_2043  methylmalonyl-CoA epimerase  75.37 
 
 
134 aa  212  1.9999999999999998e-54  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.370344  normal 
 
 
-
 
NC_011894  Mnod_4142  methylmalonyl-CoA epimerase  78.2 
 
 
134 aa  212  1.9999999999999998e-54  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.65243  n/a   
 
 
-
 
NC_009505  BOV_0813  methylmalonyl-CoA epimerase  76.87 
 
 
134 aa  211  1.9999999999999998e-54  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2407  methylmalonyl-CoA epimerase  76.12 
 
 
134 aa  211  2.9999999999999995e-54  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.914364  n/a   
 
 
-
 
NC_010511  M446_4406  methylmalonyl-CoA epimerase  77.44 
 
 
134 aa  211  3.9999999999999995e-54  Methylobacterium sp. 4-46  Bacteria  normal  0.865386  normal  0.62826 
 
 
-
 
NC_008254  Meso_1038  methylmalonyl-CoA epimerase  76.12 
 
 
134 aa  208  2e-53  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.00716429  n/a   
 
 
-
 
NC_010581  Bind_2198  methylmalonyl-CoA epimerase  75.94 
 
 
136 aa  208  3e-53  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_011666  Msil_2934  methylmalonyl-CoA epimerase  75.94 
 
 
134 aa  205  1e-52  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011989  Avi_1733  lactoylglutathione lyase  70.9 
 
 
134 aa  201  2e-51  Agrobacterium vitis S4  Bacteria  normal  0.881956  n/a   
 
 
-
 
NC_009485  BBta_4545  methylmalonyl-CoA epimerase  67.67 
 
 
134 aa  188  2e-47  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0847692  normal  0.36006 
 
 
-
 
NC_008576  Mmc1_0384  methylmalonyl-CoA epimerase  70.68 
 
 
133 aa  188  2.9999999999999997e-47  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_007958  RPD_2869  glyoxalase/bleomycin resistance protein/dioxygenase  68.42 
 
 
134 aa  187  5e-47  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.15489  normal  0.392807 
 
 
-
 
NC_007925  RPC_2420  glyoxalase/bleomycin resistance protein/dioxygenase  68.42 
 
 
134 aa  186  9e-47  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.132451  normal  0.0328629 
 
 
-
 
NC_007778  RPB_2590  glyoxalase/bleomycin resistance protein/dioxygenase  66.92 
 
 
134 aa  184  4e-46  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.223231  normal 
 
 
-
 
NC_007406  Nwi_1871  glyoxalase/bleomycin resistance protein/dioxygenase  67.67 
 
 
134 aa  182  1.0000000000000001e-45  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.295419  normal  0.1439 
 
 
-
 
NC_007964  Nham_2204  glyoxalase/bleomycin resistance protein/dioxygenase  66.92 
 
 
134 aa  180  5.0000000000000004e-45  Nitrobacter hamburgensis X14  Bacteria  normal  0.269576  n/a   
 
 
-
 
NC_011004  Rpal_3282  methylmalonyl-CoA epimerase  65.41 
 
 
134 aa  178  2e-44  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.587333  n/a   
 
 
-
 
NC_009719  Plav_3210  methylmalonyl-CoA epimerase  63.91 
 
 
134 aa  176  1e-43  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0791094  normal 
 
 
-
 
NC_008347  Mmar10_1372  methylmalonyl-CoA epimerase  58.65 
 
 
139 aa  153  1e-36  Maricaulis maris MCS10  Bacteria  normal  normal  0.0208267 
 
 
-
 
NC_011370  Rleg2_6135  methylmalonyl-CoA epimerase  55.3 
 
 
132 aa  150  7e-36  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00511607  normal  0.152762 
 
 
-
 
NC_009511  Swit_2892  methylmalonyl-CoA epimerase  55.22 
 
 
141 aa  148  3e-35  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.20735 
 
 
-
 
NC_010338  Caul_2814  methylmalonyl-CoA epimerase  54.07 
 
 
138 aa  144  3e-34  Caulobacter sp. K31  Bacteria  normal  0.744827  normal  0.836687 
 
 
-
 
NC_008048  Sala_1220  glyoxalase/bleomycin resistance protein/dioxygenase  48.94 
 
 
146 aa  129  2.0000000000000002e-29  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.019887  normal 
 
 
-
 
NC_002939  GSU3303  methylmalonyl-CoA epimerase  48.12 
 
 
134 aa  115  3e-25  Geobacter sulfurreducens PCA  Bacteria  hitchhiker  0.000981467  n/a   
 
 
-
 
NC_007517  Gmet_3253  methylmalonyl-CoA epimerase  47.76 
 
 
134 aa  114  3e-25  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000018375  hitchhiker  3.27573e-17 
 
 
-
 
NC_007794  Saro_0810  methylmalonyl-CoA epimerase  42.86 
 
 
146 aa  111  3e-24  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_008609  Ppro_0522  glyoxalase/bleomycin resistance protein/dioxygenase  43.61 
 
 
134 aa  106  8.000000000000001e-23  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000000014865  n/a   
 
 
-
 
NC_009483  Gura_0655  glyoxalase/bleomycin resistance protein/dioxygenase  43.61 
 
 
134 aa  107  8.000000000000001e-23  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000000195436  n/a   
 
 
-
 
NC_011060  Ppha_1170  methylmalonyl-CoA epimerase  45.19 
 
 
135 aa  106  1e-22  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.107967  n/a   
 
 
-
 
NC_008609  Ppro_1282  glyoxalase/bleomycin resistance protein/dioxygenase  42.11 
 
 
134 aa  102  2e-21  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3258  methylmalonyl-CoA epimerase  42.86 
 
 
134 aa  102  2e-21  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000316472  n/a   
 
 
-
 
NC_010803  Clim_0871  methylmalonyl-CoA epimerase  42.96 
 
 
135 aa  101  3e-21  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_011146  Gbem_0558  methylmalonyl-CoA epimerase  41.79 
 
 
137 aa  100  5e-21  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_007512  Plut_1289  lactoylglutathione lyase  44.36 
 
 
137 aa  100  5e-21  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_009718  Fnod_1316  glyoxalase/bleomycin resistance protein/dioxygenase  45.31 
 
 
135 aa  99.4  1e-20  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_012918  GM21_0571  methylmalonyl-CoA epimerase  41.04 
 
 
137 aa  99  2e-20  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.82853e-18 
 
 
-
 
NC_014230  CA2559_03285  Lactoylglutathione lyase and related lyase  44.36 
 
 
135 aa  98.2  4e-20  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.275732  n/a   
 
 
-
 
NC_013061  Phep_1564  methylmalonyl-CoA epimerase  43.18 
 
 
134 aa  96.3  1e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.395959 
 
 
-
 
NC_013730  Slin_5823  methylmalonyl-CoA epimerase  44.36 
 
 
135 aa  95.9  2e-19  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.609352 
 
 
-
 
NC_008639  Cpha266_1167  methylmalonyl-CoA epimerase  42.22 
 
 
135 aa  95.5  2e-19  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.217696  n/a   
 
 
-
 
NC_010831  Cphamn1_1175  methylmalonyl-CoA epimerase  42.22 
 
 
134 aa  94  7e-19  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0281042 
 
 
-
 
NC_013037  Dfer_3197  methylmalonyl-CoA epimerase  43.61 
 
 
134 aa  92.8  1e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_1488  methylmalonyl-CoA epimerase  38.93 
 
 
134 aa  92  2e-18  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.383789  normal  0.131397 
 
 
-
 
NC_010003  Pmob_0552  methylmalonyl-CoA epimerase  38.28 
 
 
134 aa  92.4  2e-18  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0659  glyoxalase/bleomycin resistance protein/dioxygenase  42.86 
 
 
134 aa  90.9  6e-18  Flavobacterium johnsoniae UW101  Bacteria  hitchhiker  0.00502246  n/a   
 
 
-
 
NC_010085  Nmar_0953  glyoxalase/bleomycin resistance protein/dioxygenase  37.5 
 
 
131 aa  88.2  3e-17  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0254493 
 
 
-
 
NC_013525  Tter_1623  methylmalonyl-CoA epimerase  38.76 
 
 
136 aa  88.2  3e-17  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_013169  Ksed_09410  methylmalonyl-CoA epimerase  39.37 
 
 
145 aa  87  7e-17  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.990135  normal  0.273906 
 
 
-
 
NC_013739  Cwoe_5865  methylmalonyl-CoA epimerase  36.84 
 
 
136 aa  87  8e-17  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1852  glyoxalase/bleomycin resistance protein/dioxygenase  37.69 
 
 
133 aa  87  8e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009616  Tmel_0586  glyoxalase/bleomycin resistance protein/dioxygenase  40.62 
 
 
135 aa  87  8e-17  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_013093  Amir_6105  methylmalonyl-CoA epimerase  41.18 
 
 
146 aa  86.7  1e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_0349  glyoxalase/bleomycin resistance protein/dioxygenase  42.64 
 
 
134 aa  86.7  1e-16  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0717499  normal  0.143694 
 
 
-
 
NC_008025  Dgeo_1790  glyoxalase/bleomycin resistance protein/dioxygenase  45.31 
 
 
158 aa  85.1  3e-16  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_014210  Ndas_0356  methylmalonyl-CoA epimerase  38.97 
 
 
192 aa  84.3  5e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
NC_011059  Paes_0877  methylmalonyl-CoA epimerase  38.52 
 
 
134 aa  84  7e-16  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.157449  normal  0.0450617 
 
 
-
 
NC_013132  Cpin_0228  methylmalonyl-CoA epimerase  39.39 
 
 
132 aa  82.8  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_007333  Tfu_2395  methylmalonyl-CoA epimerase  35.97 
 
 
147 aa  83.2  0.000000000000001  Thermobifida fusca YX  Bacteria  normal  0.754558  n/a   
 
 
-
 
NC_013926  Aboo_1361  methylmalonyl-CoA epimerase  40.46 
 
 
129 aa  83.2  0.000000000000001  Aciduliprofundum boonei T469  Archaea  unclonable  2.7651e-17  n/a   
 
 
-
 
NC_013235  Namu_3104  methylmalonyl-CoA epimerase  42.31 
 
 
163 aa  81.3  0.000000000000004  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000698993  hitchhiker  0.0000492352 
 
 
-
 
NC_008726  Mvan_4306  glyoxalase/bleomycin resistance protein/dioxygenase  36.03 
 
 
161 aa  80.9  0.000000000000005  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.725625 
 
 
-
 
NC_011891  A2cp1_4223  methylmalonyl-CoA epimerase  41.86 
 
 
133 aa  80.9  0.000000000000005  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3993  glyoxalase/bleomycin resistance protein/dioxygenase  36.36 
 
 
159 aa  80.9  0.000000000000006  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00061687 
 
 
-
 
NC_010571  Oter_3306  methylmalonyl-CoA epimerase  36.64 
 
 
135 aa  80.5  0.000000000000007  Opitutus terrae PB90-1  Bacteria  normal  0.369567  normal 
 
 
-
 
NC_011145  AnaeK_4198  methylmalonyl-CoA epimerase  41.86 
 
 
134 aa  80.5  0.000000000000007  Anaeromyxobacter sp. K  Bacteria  normal  0.152541  n/a   
 
 
-
 
NC_002950  PG1613  glyoxalase family protein  37.88 
 
 
134 aa  80.1  0.000000000000009  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_013510  Tcur_3891  methylmalonyl-CoA epimerase  37.14 
 
 
145 aa  80.1  0.00000000000001  Thermomonospora curvata DSM 43183  Bacteria  normal  0.394666  n/a   
 
 
-
 
NC_009338  Mflv_2339  glyoxalase/bleomycin resistance protein/dioxygenase  35.29 
 
 
168 aa  79  0.00000000000002  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.630848  normal  0.527959 
 
 
-
 
NC_008699  Noca_1796  methylmalonyl-CoA epimerase  37.98 
 
 
170 aa  77.8  0.00000000000004  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_013159  Svir_28560  methylmalonyl-CoA epimerase  37.96 
 
 
153 aa  77.8  0.00000000000005  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.215327 
 
 
-
 
NC_010655  Amuc_0200  methylmalonyl-CoA epimerase  40.74 
 
 
140 aa  77.4  0.00000000000006  Akkermansia muciniphila ATCC BAA-835  Bacteria  hitchhiker  0.000715247  normal  0.843381 
 
 
-
 
NC_007514  Cag_1126  hypothetical protein  40 
 
 
135 aa  77  0.00000000000008  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_4074  methylmalonyl-CoA epimerase  40.31 
 
 
133 aa  77  0.00000000000008  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0584893  n/a   
 
 
-
 
NC_008009  Acid345_2364  methylmalonyl-CoA epimerase  37.5 
 
 
135 aa  77  0.00000000000008  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3851  methylmalonyl-CoA epimerase  33.09 
 
 
156 aa  77  0.00000000000008  Mycobacterium sp. JLS  Bacteria  normal  hitchhiker  0.00602371 
 
 
-
 
NC_013411  GYMC61_0306  methylmalonyl-CoA epimerase  37.69 
 
 
141 aa  77  0.00000000000009  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013595  Sros_1696  methylmalonyl-CoA epimerase  34.78 
 
 
140 aa  76.6  0.0000000000001  Streptosporangium roseum DSM 43021  Bacteria  normal  0.019096  normal  0.134039 
 
 
-
 
NC_012793  GWCH70_2285  methylmalonyl-CoA epimerase  38.46 
 
 
140 aa  76.6  0.0000000000001  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.0000102737  n/a   
 
 
-
 
CP001800  Ssol_0230  methylmalonyl-CoA epimerase  36.23 
 
 
142 aa  75.5  0.0000000000002  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_009972  Haur_2006  glyoxalase/bleomycin resistance protein/dioxygenase  34.35 
 
 
140 aa  75.9  0.0000000000002  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013522  Taci_0290  methylmalonyl-CoA epimerase  32.56 
 
 
133 aa  75.5  0.0000000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_008554  Sfum_0455  glyoxalase/bleomycin resistance protein/dioxygenase  35.38 
 
 
134 aa  75.5  0.0000000000003  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.571993 
 
 
-
 
NC_008146  Mmcs_3865  methylmalonyl-CoA epimerase  32.35 
 
 
156 aa  74.7  0.0000000000004  Mycobacterium sp. MCS  Bacteria  normal  0.241683  n/a   
 
 
-
 
NC_008705  Mkms_3939  methylmalonyl-CoA epimerase  32.35 
 
 
156 aa  74.7  0.0000000000004  Mycobacterium sp. KMS  Bacteria  normal  0.368557  normal  0.0232297 
 
 
-
 
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