Gene Ppha_1170 details

Gene Information

• Locus tag: Ppha_1170
• ID: 6462823
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pelodictyon phaeoclathratiforme BU-1
• Kingdom: Bacteria
• Replicon accession: NC_011060
• Strand: -
• Start bp: 1224281
• End bp: 1224688
• Gene Length: 408 bp
• Protein Length: 135 aa
• Translation table: 11
• GC content: 45%
• IMG OID: 642727418
• Product: methylmalonyl-CoA epimerase
• Protein accession: YP_002018062
• Protein GI: 194336268
• COG category: [E] Amino acid transport and metabolism; [R] General function prediction only
• COG ID: [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins
• TIGRFAM ID: [TIGR03081] methylmalonyl-CoA epimerase

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.107967
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCAAAA AAATTGACCA TATCGCGATT GCCGTCCAAA ACCTTGAAAG CGCACTTGAG 
ACGTTCCGGA ACGTTCTTGG GTGCGCCAGG GAGGCGATCA GGATCGAAGA AGTTCCGTCT 
GAAAATGTGC GCGTTGCATT TATTTCCATT GGAGAGACAA AAATCGAACT CCTGGAACCC 
ATGAGCAATG AGAGTGCCAT TGCAAAATTT CTTGCAAAAA ACGGCGACGG CATGCATCAT 
ATCGCATTTG AAACCGACGA CATCGAAAAA GAAACGGAGC GTCTTCGCTC CGTCAATATC 
AATCCACTTG GCTTGCCAAA AGAAGGGGCA GGCGGAAAAA AAATTATGTT TCTTCACCCT 
AAAGAGACCA ACAGGGTACT TCTTGAATTT GCTCAAAAAC AGCATTAA 

 

Protein sequence

MIKKIDHIAI AVQNLESALE TFRNVLGCAR EAIRIEEVPS ENVRVAFISI GETKIELLEP 
MSNESAIAKF LAKNGDGMHH IAFETDDIEK ETERLRSVNI NPLGLPKEGA GGKKIMFLHP 
KETNRVLLEF AQKQH