165 homologs were found in PanDaTox collection
for query gene Smed_0906 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009636  Smed_0906  methylmalonyl-CoA epimerase  100 
 
 
134 aa  270  5.000000000000001e-72  Sinorhizobium medicae WSM419  Bacteria  normal  0.61726  normal 
 
 
-
 
NC_012850  Rleg_1369  methylmalonyl-CoA epimerase  80.45 
 
 
134 aa  228  2e-59  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011369  Rleg2_1277  methylmalonyl-CoA epimerase  79.7 
 
 
134 aa  226  8e-59  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  0.149828  normal  0.902197 
 
 
-
 
NC_011989  Avi_1733  lactoylglutathione lyase  80.6 
 
 
134 aa  225  2e-58  Agrobacterium vitis S4  Bacteria  normal  0.881956  n/a   
 
 
-
 
NC_009505  BOV_0813  methylmalonyl-CoA epimerase  78.36 
 
 
134 aa  219  9.999999999999999e-57  Brucella ovis ATCC 25840  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2407  methylmalonyl-CoA epimerase  78.36 
 
 
134 aa  218  1.9999999999999999e-56  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.914364  n/a   
 
 
-
 
NC_007493  RSP_0812  methylmalonyl-CoA epimerase  75.37 
 
 
134 aa  217  3.9999999999999997e-56  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  n/a   
 
 
-
 
NC_009049  Rsph17029_2469  glyoxalase/bleomycin resistance protein/dioxygenase  75.37 
 
 
134 aa  217  3.9999999999999997e-56  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  normal  0.186921 
 
 
-
 
NC_004310  BR0818  glyoxalase family protein  77.61 
 
 
134 aa  217  5e-56  Brucella suis 1330  Bacteria  normal  0.688033  n/a   
 
 
-
 
NC_009428  Rsph17025_0368  methylmalonyl-CoA epimerase  76.12 
 
 
134 aa  216  7e-56  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  0.528801  normal  0.892682 
 
 
-
 
NC_007802  Jann_3164  methylmalonyl-CoA epimerase  75.37 
 
 
134 aa  214  2.9999999999999998e-55  Jannaschia sp. CCS1  Bacteria  normal  normal 
 
 
-
 
NC_008254  Meso_1038  methylmalonyl-CoA epimerase  76.12 
 
 
134 aa  212  9.999999999999999e-55  Chelativorans sp. BNC1  Bacteria  hitchhiker  0.00716429  n/a   
 
 
-
 
NC_008044  TM1040_0637  methylmalonyl-CoA epimerase  73.88 
 
 
134 aa  210  4.9999999999999996e-54  Ruegeria sp. TM1040  Bacteria  normal  normal  0.355591 
 
 
-
 
NC_008686  Pden_2178  glyoxalase/bleomycin resistance protein/dioxygenase  73.13 
 
 
134 aa  210  5.999999999999999e-54  Paracoccus denitrificans PD1222  Bacteria  normal  0.794327  normal 
 
 
-
 
NC_009952  Dshi_2630  putative glyoxalase  73.88 
 
 
134 aa  209  7.999999999999999e-54  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal  0.0581567 
 
 
-
 
NC_010581  Bind_2198  methylmalonyl-CoA epimerase  73.13 
 
 
136 aa  208  2e-53  Beijerinckia indica subsp. indica ATCC 9039  Bacteria  normal  normal 
 
 
-
 
NC_010725  Mpop_1003  methylmalonyl-CoA epimerase  73.13 
 
 
134 aa  207  3e-53  Methylobacterium populi BJ001  Bacteria  normal  0.0862504  normal  0.205859 
 
 
-
 
NC_010511  M446_4406  methylmalonyl-CoA epimerase  72.93 
 
 
134 aa  207  4e-53  Methylobacterium sp. 4-46  Bacteria  normal  0.865386  normal  0.62826 
 
 
-
 
NC_011757  Mchl_1198  methylmalonyl-CoA epimerase  72.39 
 
 
134 aa  206  6e-53  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal 
 
 
-
 
NC_010172  Mext_1069  methylmalonyl-CoA epimerase  72.39 
 
 
134 aa  206  6e-53  Methylobacterium extorquens PA1  Bacteria  normal  0.17549  normal  0.247158 
 
 
-
 
NC_011894  Mnod_4142  methylmalonyl-CoA epimerase  72.18 
 
 
134 aa  206  7e-53  Methylobacterium nodulans ORS 2060  Bacteria  normal  0.65243  n/a   
 
 
-
 
NC_007643  Rru_A1572  methylmalonyl-CoA epimerase  72.18 
 
 
134 aa  206  8e-53  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.99694  n/a   
 
 
-
 
NC_010505  Mrad2831_2043  methylmalonyl-CoA epimerase  68.66 
 
 
134 aa  200  5e-51  Methylobacterium radiotolerans JCM 2831  Bacteria  normal  0.370344  normal 
 
 
-
 
NC_009720  Xaut_4617  methylmalonyl-CoA epimerase  69.92 
 
 
134 aa  200  7e-51  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.0621953 
 
 
-
 
NC_011666  Msil_2934  methylmalonyl-CoA epimerase  68.42 
 
 
134 aa  196  6e-50  Methylocella silvestris BL2  Bacteria  n/a    normal 
 
 
-
 
NC_011004  Rpal_3282  methylmalonyl-CoA epimerase  64.66 
 
 
134 aa  187  4e-47  Rhodopseudomonas palustris TIE-1  Bacteria  normal  0.587333  n/a   
 
 
-
 
NC_009485  BBta_4545  methylmalonyl-CoA epimerase  63.91 
 
 
134 aa  186  1e-46  Bradyrhizobium sp. BTAi1  Bacteria  normal  0.0847692  normal  0.36006 
 
 
-
 
NC_007778  RPB_2590  glyoxalase/bleomycin resistance protein/dioxygenase  63.91 
 
 
134 aa  183  6e-46  Rhodopseudomonas palustris HaA2  Bacteria  normal  0.223231  normal 
 
 
-
 
NC_007925  RPC_2420  glyoxalase/bleomycin resistance protein/dioxygenase  63.91 
 
 
134 aa  182  1.0000000000000001e-45  Rhodopseudomonas palustris BisB18  Bacteria  normal  0.132451  normal  0.0328629 
 
 
-
 
NC_007964  Nham_2204  glyoxalase/bleomycin resistance protein/dioxygenase  62.41 
 
 
134 aa  180  7e-45  Nitrobacter hamburgensis X14  Bacteria  normal  0.269576  n/a   
 
 
-
 
NC_007958  RPD_2869  glyoxalase/bleomycin resistance protein/dioxygenase  62.41 
 
 
134 aa  179  9.000000000000001e-45  Rhodopseudomonas palustris BisB5  Bacteria  normal  0.15489  normal  0.392807 
 
 
-
 
NC_007406  Nwi_1871  glyoxalase/bleomycin resistance protein/dioxygenase  60.9 
 
 
134 aa  178  2.9999999999999997e-44  Nitrobacter winogradskyi Nb-255  Bacteria  normal  0.295419  normal  0.1439 
 
 
-
 
NC_008576  Mmc1_0384  methylmalonyl-CoA epimerase  64.66 
 
 
133 aa  177  4e-44  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_009719  Plav_3210  methylmalonyl-CoA epimerase  62.41 
 
 
134 aa  172  9.999999999999999e-43  Parvibaculum lavamentivorans DS-1  Bacteria  normal  0.0791094  normal 
 
 
-
 
NC_011370  Rleg2_6135  methylmalonyl-CoA epimerase  58.33 
 
 
132 aa  162  1.0000000000000001e-39  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  hitchhiker  0.00511607  normal  0.152762 
 
 
-
 
NC_008347  Mmar10_1372  methylmalonyl-CoA epimerase  55.64 
 
 
139 aa  155  2e-37  Maricaulis maris MCS10  Bacteria  normal  normal  0.0208267 
 
 
-
 
NC_010338  Caul_2814  methylmalonyl-CoA epimerase  53.79 
 
 
138 aa  150  5e-36  Caulobacter sp. K31  Bacteria  normal  0.744827  normal  0.836687 
 
 
-
 
NC_009511  Swit_2892  methylmalonyl-CoA epimerase  49.62 
 
 
141 aa  142  1e-33  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.20735 
 
 
-
 
NC_008048  Sala_1220  glyoxalase/bleomycin resistance protein/dioxygenase  47.52 
 
 
146 aa  130  6.999999999999999e-30  Sphingopyxis alaskensis RB2256  Bacteria  normal  0.019887  normal 
 
 
-
 
NC_007517  Gmet_3253  methylmalonyl-CoA epimerase  50.75 
 
 
134 aa  124  6e-28  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00000018375  hitchhiker  3.27573e-17 
 
 
-
 
NC_002939  GSU3303  methylmalonyl-CoA epimerase  48.87 
 
 
134 aa  119  9.999999999999999e-27  Geobacter sulfurreducens PCA  Bacteria  hitchhiker  0.000981467  n/a   
 
 
-
 
NC_007794  Saro_0810  methylmalonyl-CoA epimerase  43.8 
 
 
146 aa  117  7.999999999999999e-26  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  n/a   
 
 
-
 
NC_009483  Gura_0655  glyoxalase/bleomycin resistance protein/dioxygenase  45.86 
 
 
134 aa  111  3e-24  Geobacter uraniireducens Rf4  Bacteria  hitchhiker  0.00000000195436  n/a   
 
 
-
 
NC_011060  Ppha_1170  methylmalonyl-CoA epimerase  40.74 
 
 
135 aa  106  1e-22  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.107967  n/a   
 
 
-
 
NC_011146  Gbem_0558  methylmalonyl-CoA epimerase  44.03 
 
 
137 aa  105  2e-22  Geobacter bemidjiensis Bem  Bacteria  unclonable  0.000000000977172  n/a   
 
 
-
 
NC_008609  Ppro_0522  glyoxalase/bleomycin resistance protein/dioxygenase  41.79 
 
 
134 aa  103  7e-22  Pelobacter propionicus DSM 2379  Bacteria  hitchhiker  0.0000000014865  n/a   
 
 
-
 
NC_007512  Plut_1289  lactoylglutathione lyase  42.86 
 
 
137 aa  103  1e-21  Chlorobium luteolum DSM 273  Bacteria  normal  normal 
 
 
-
 
NC_008609  Ppro_1282  glyoxalase/bleomycin resistance protein/dioxygenase  42.11 
 
 
134 aa  102  2e-21  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_3258  methylmalonyl-CoA epimerase  42.11 
 
 
134 aa  101  3e-21  Geobacter lovleyi SZ  Bacteria  hitchhiker  0.0000316472  n/a   
 
 
-
 
NC_012918  GM21_0571  methylmalonyl-CoA epimerase  42.54 
 
 
137 aa  100  6e-21  Geobacter sp. M21  Bacteria  n/a    hitchhiker  3.82853e-18 
 
 
-
 
NC_010803  Clim_0871  methylmalonyl-CoA epimerase  40.74 
 
 
135 aa  100  9e-21  Chlorobium limicola DSM 245  Bacteria  normal  n/a   
 
 
-
 
NC_009718  Fnod_1316  glyoxalase/bleomycin resistance protein/dioxygenase  43.75 
 
 
135 aa  99.4  2e-20  Fervidobacterium nodosum Rt17-B1  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_5823  methylmalonyl-CoA epimerase  42.86 
 
 
135 aa  97.8  4e-20  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.609352 
 
 
-
 
NC_008639  Cpha266_1167  methylmalonyl-CoA epimerase  40.44 
 
 
135 aa  97.8  5e-20  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  0.217696  n/a   
 
 
-
 
NC_010718  Nther_1488  methylmalonyl-CoA epimerase  39.69 
 
 
134 aa  95.5  2e-19  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.383789  normal  0.131397 
 
 
-
 
NC_013037  Dfer_3197  methylmalonyl-CoA epimerase  41.35 
 
 
134 aa  95.1  3e-19  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1564  methylmalonyl-CoA epimerase  38.64 
 
 
134 aa  95.1  3e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal  0.395959 
 
 
-
 
NC_013739  Cwoe_5865  methylmalonyl-CoA epimerase  39.1 
 
 
136 aa  94  6e-19  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_014230  CA2559_03285  Lactoylglutathione lyase and related lyase  39.1 
 
 
135 aa  93.6  9e-19  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.275732  n/a   
 
 
-
 
NC_009616  Tmel_0586  glyoxalase/bleomycin resistance protein/dioxygenase  42.19 
 
 
135 aa  92.8  1e-18  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_010085  Nmar_0953  glyoxalase/bleomycin resistance protein/dioxygenase  37.5 
 
 
131 aa  93.2  1e-18  Nitrosopumilus maritimus SCM1  Archaea  n/a    normal  0.0254493 
 
 
-
 
NC_013510  Tcur_3891  methylmalonyl-CoA epimerase  38.57 
 
 
145 aa  89.7  1e-17  Thermomonospora curvata DSM 43183  Bacteria  normal  0.394666  n/a   
 
 
-
 
NC_013926  Aboo_1361  methylmalonyl-CoA epimerase  38.17 
 
 
129 aa  89.4  2e-17  Aciduliprofundum boonei T469  Archaea  unclonable  2.7651e-17  n/a   
 
 
-
 
NC_007333  Tfu_2395  methylmalonyl-CoA epimerase  35.97 
 
 
147 aa  88.2  3e-17  Thermobifida fusca YX  Bacteria  normal  0.754558  n/a   
 
 
-
 
NC_009523  RoseRS_0480  glyoxalase/bleomycin resistance protein/dioxygenase  38.06 
 
 
134 aa  88.2  3e-17  Roseiflexus sp. RS-1  Bacteria  normal  normal 
 
 
-
 
NC_010320  Teth514_1852  glyoxalase/bleomycin resistance protein/dioxygenase  38.28 
 
 
133 aa  88.2  4e-17  Thermoanaerobacter sp. X514  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0152  glyoxalase/bleomycin resistance protein/dioxygenase  38.06 
 
 
134 aa  87.4  5e-17  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal 
 
 
-
 
NC_008726  Mvan_4306  glyoxalase/bleomycin resistance protein/dioxygenase  36.03 
 
 
161 aa  87.4  6e-17  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  normal  0.725625 
 
 
-
 
NC_009675  Anae109_0349  glyoxalase/bleomycin resistance protein/dioxygenase  40.31 
 
 
134 aa  87.4  6e-17  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.0717499  normal  0.143694 
 
 
-
 
NC_013093  Amir_6105  methylmalonyl-CoA epimerase  38.24 
 
 
146 aa  86.3  1e-16  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013525  Tter_1623  methylmalonyl-CoA epimerase  37.21 
 
 
136 aa  86.3  1e-16  Thermobaculum terrenum ATCC BAA-798  Bacteria  n/a    n/a   
 
 
-
 
NC_010003  Pmob_0552  methylmalonyl-CoA epimerase  35.16 
 
 
134 aa  86.7  1e-16  Petrotoga mobilis SJ95  Bacteria  normal  n/a   
 
 
-
 
NC_009441  Fjoh_0659  glyoxalase/bleomycin resistance protein/dioxygenase  37.59 
 
 
134 aa  85.5  2e-16  Flavobacterium johnsoniae UW101  Bacteria  hitchhiker  0.00502246  n/a   
 
 
-
 
NC_011891  A2cp1_4223  methylmalonyl-CoA epimerase  41.09 
 
 
133 aa  85.1  3e-16  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3993  glyoxalase/bleomycin resistance protein/dioxygenase  37.31 
 
 
159 aa  85.5  3e-16  Salinispora arenicola CNS-205  Bacteria  normal  hitchhiker  0.00061687 
 
 
-
 
NC_011145  AnaeK_4198  methylmalonyl-CoA epimerase  41.09 
 
 
134 aa  84.7  4e-16  Anaeromyxobacter sp. K  Bacteria  normal  0.152541  n/a   
 
 
-
 
NC_014210  Ndas_0356  methylmalonyl-CoA epimerase  38.41 
 
 
192 aa  84  6e-16  Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111  Bacteria  normal  normal 
 
 
-
 
CP001800  Ssol_0230  methylmalonyl-CoA epimerase  36.57 
 
 
142 aa  84  7e-16  Sulfolobus solfataricus 98/2  Archaea  normal  n/a   
 
 
-
 
NC_011059  Paes_0877  methylmalonyl-CoA epimerase  34.78 
 
 
134 aa  83.6  8e-16  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.157449  normal  0.0450617 
 
 
-
 
NC_013169  Ksed_09410  methylmalonyl-CoA epimerase  35.88 
 
 
145 aa  83.6  9e-16  Kytococcus sedentarius DSM 20547  Bacteria  normal  0.990135  normal  0.273906 
 
 
-
 
NC_009338  Mflv_2339  glyoxalase/bleomycin resistance protein/dioxygenase  33.82 
 
 
168 aa  83.6  9e-16  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.630848  normal  0.527959 
 
 
-
 
NC_013132  Cpin_0228  methylmalonyl-CoA epimerase  37.12 
 
 
132 aa  83.2  0.000000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  normal 
 
 
-
 
NC_009077  Mjls_3851  methylmalonyl-CoA epimerase  33.82 
 
 
156 aa  83.6  0.000000000000001  Mycobacterium sp. JLS  Bacteria  normal  hitchhiker  0.00602371 
 
 
-
 
NC_002950  PG1613  glyoxalase family protein  37.12 
 
 
134 aa  81.6  0.000000000000004  Porphyromonas gingivalis W83  Bacteria  n/a    normal 
 
 
-
 
NC_010831  Cphamn1_1175  methylmalonyl-CoA epimerase  35.56 
 
 
134 aa  81.3  0.000000000000004  Chlorobium phaeobacteroides BS1  Bacteria  normal  normal  0.0281042 
 
 
-
 
NC_008009  Acid345_2364  methylmalonyl-CoA epimerase  37.5 
 
 
135 aa  81.3  0.000000000000004  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008146  Mmcs_3865  methylmalonyl-CoA epimerase  33.09 
 
 
156 aa  81.3  0.000000000000004  Mycobacterium sp. MCS  Bacteria  normal  0.241683  n/a   
 
 
-
 
NC_008705  Mkms_3939  methylmalonyl-CoA epimerase  33.09 
 
 
156 aa  81.3  0.000000000000004  Mycobacterium sp. KMS  Bacteria  normal  0.368557  normal  0.0232297 
 
 
-
 
NC_007760  Adeh_4074  methylmalonyl-CoA epimerase  39.53 
 
 
133 aa  80.9  0.000000000000005  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.0584893  n/a   
 
 
-
 
NC_011831  Cagg_0981  methylmalonyl-CoA epimerase  38.52 
 
 
139 aa  80.9  0.000000000000005  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0245792  normal  0.390705 
 
 
-
 
NC_013411  GYMC61_0306  methylmalonyl-CoA epimerase  39.84 
 
 
141 aa  80.1  0.00000000000001  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010571  Oter_3306  methylmalonyl-CoA epimerase  35.11 
 
 
135 aa  80.1  0.00000000000001  Opitutus terrae PB90-1  Bacteria  normal  0.369567  normal 
 
 
-
 
NC_013522  Taci_0290  methylmalonyl-CoA epimerase  34.11 
 
 
133 aa  78.6  0.00000000000003  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  normal  n/a   
 
 
-
 
NC_009440  Msed_0639  methylmalonyl-CoA epimerase  35.82 
 
 
140 aa  78.6  0.00000000000003  Metallosphaera sedula DSM 5348  Archaea  normal  0.237468  normal  0.259775 
 
 
-
 
NC_008025  Dgeo_1790  glyoxalase/bleomycin resistance protein/dioxygenase  42.19 
 
 
158 aa  77.8  0.00000000000004  Deinococcus geothermalis DSM 11300  Bacteria  normal  normal 
 
 
-
 
NC_013159  Svir_28560  methylmalonyl-CoA epimerase  36.84 
 
 
153 aa  78.2  0.00000000000004  Saccharomonospora viridis DSM 43017  Bacteria  normal  normal  0.215327 
 
 
-
 
NC_009972  Haur_2006  glyoxalase/bleomycin resistance protein/dioxygenase  35.11 
 
 
140 aa  77.8  0.00000000000004  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  n/a   
 
 
-
 
NC_013235  Namu_3104  methylmalonyl-CoA epimerase  39.23 
 
 
163 aa  77.8  0.00000000000005  Nakamurella multipartita DSM 44233  Bacteria  hitchhiker  0.000698993  hitchhiker  0.0000492352 
 
 
-
 
NC_008554  Sfum_0455  glyoxalase/bleomycin resistance protein/dioxygenase  34.62 
 
 
134 aa  77.8  0.00000000000005  Syntrophobacter fumaroxidans MPOB  Bacteria  normal  normal  0.571993 
 
 
-
 
NC_009380  Strop_3611  glyoxalase/bleomycin resistance protein/dioxygenase  35.82 
 
 
157 aa  77.8  0.00000000000005  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
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