Gene Clim_0871 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagClim_0871 
Symbol 
ID6354106 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameChlorobium limicola DSM 245 
KingdomBacteria 
Replicon accessionNC_010803 
Strand- 
Start bp954004 
End bp954411 
Gene Length408 bp 
Protein Length135 aa 
Translation table11 
GC content52% 
IMG OID642668496 
Productmethylmalonyl-CoA epimerase 
Protein accessionYP_001942929 
Protein GI189346400 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR03081] methylmalonyl-CoA epimerase 


Plasmid Coverage information

Num covering plasmid clones50 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATCAGGA AGATCGACCA TATCGCCATA GCTGTCCAGA ACCTTGAAAG CGCACTCGAA 
ACGTTCATGA ACGTACTCGG GTGCGCCCCC GGGGATATCA CCATTGAAGA GGTACCATCG 
GAAAAGGTAA GGGTTGCATT CATTCCGGTG GGTGATACAA AAATAGAGCT GCTCCAGCCG 
CTCTCCGACG ACAGCCCCAT TTCGAAGTTT CTGCAGAAAA ACGGGGACGG CATGCACCAT 
ATCGCACTGC AGACAGACAA TATCGAAGAG GAGACGACAC GGCTCGCTTC GGTAAACCTC 
AGTACGCTTG GGGCCCCGAA AGATGGGGCC GGAGGAAAAC GCATTGTGTT TCTTCATCCG 
AAAGAGACCA ACAGAGTCCT GCTGGAATTC ACACAGAAAC ATTCTTGA
 
Protein sequence
MIRKIDHIAI AVQNLESALE TFMNVLGCAP GDITIEEVPS EKVRVAFIPV GDTKIELLQP 
LSDDSPISKF LQKNGDGMHH IALQTDNIEE ETTRLASVNL STLGAPKDGA GGKRIVFLHP 
KETNRVLLEF TQKHS