| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0637 |
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| Symbol | |
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| ID | 4076124 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 681032 |
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| End bp | 681436 |
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| Gene Length | 405 bp |
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| Protein Length | 134 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638005934 |
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| Product | methylmalonyl-CoA epimerase |
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| Protein accession | YP_612632 |
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| Protein GI | 99080478 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
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| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
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| TIGRFAM ID | [TIGR03081] methylmalonyl-CoA epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.355591 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGATCGGAC GTTTGAACCA TGTCGCCATT GCCGTGCCAG ATCTGGAGGC CGCCATGGCC
CAGTATCGCG ACACCCTTGG CGCCAATGTC GGTGCACCTC AGGATGAACC TGACCATGGT
GTGACAGTGG TCTTCATTGA GTTGCCCAAC ACCAAGATCG AGCTTCTGTA TCCTTTGGGA
GAGGGCTCTC CGATCCAGGG TTTTCTCGAG AAGAATCCGG CCGGCGGCAT TCATCACATC
TGTTATGAGG TCGATGACAT CCTCGCTGCC CGAGATCGGC TCAAGGCACA GGGTGCGCGG
GTGCTCGGAA CCGGAGAGCC AAAGATCGGT GCCCATGGCA AGCCGGTTCT TTTCCTGCAT
CCCAAAGATT TCAACGGCTG CCTGGTGGAA CTCGAAGAGG TTTGA
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| Protein sequence | MIGRLNHVAI AVPDLEAAMA QYRDTLGANV GAPQDEPDHG VTVVFIELPN TKIELLYPLG
EGSPIQGFLE KNPAGGIHHI CYEVDDILAA RDRLKAQGAR VLGTGEPKIG AHGKPVLFLH
PKDFNGCLVE LEEV
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