| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noca_1796 |
|---|
| Symbol | |
|---|
| ID | 4597708 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nocardioides sp. JS614 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008699 |
|---|
| Strand | - |
|---|
| Start bp | 1909229 |
|---|
| End bp | 1909741 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639776395 |
|---|
| Product | methylmalonyl-CoA epimerase |
|---|
| Protein accession | YP_922995 |
|---|
| Protein GI | 119716030 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins |
|---|
| TIGRFAM ID | [TIGR03081] methylmalonyl-CoA epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGGTCCCGT GGGACACATG TCACATGGCC TGTCGGGCCG GTTGCACCGC TTGCCACCAT
GGACCCATGA GTCTCGACGT ACCGGCACAC CTGTTCACCG CGATCGACCA CGTGGGCGTG
GCCGTCCCCG ACCTGGACGC CGCGATCACG TTCTACGAGG AGGTCTACGG GATGCGCCTG
GCGCACCAGG AGACCAACGA GGAACAGGGT GTCCGGGAGG CGATGATGGC CGTCGGCGAC
TCCGGGTCGC ACATCCAGCT GCTGGCCCCG CTCGACGAGA ACTCGACGAT CGCGAAGTTC
CTGGACCGCT CCGGTCCGGG CATCCAGCAG ATGGCCTACC GGGTCACCGA CGTGGAGGCG
GTGGCCGCGA TCCTGCGCGA GCGCGGGCTG CGGCTCCTGT ACGACGAGCC GCGGCGCGGC
ACGTCCAAAT CGCGGGTCAA CTTCATCCAC CCCAAGGACG CGGGTGGCAT CCTGGTCGAG
CTTGTCGAGC CGGCCACCGA GCCCGCAGAC TGA
|
|---|
| Protein sequence | MVPWDTCHMA CRAGCTACHH GPMSLDVPAH LFTAIDHVGV AVPDLDAAIT FYEEVYGMRL
AHQETNEEQG VREAMMAVGD SGSHIQLLAP LDENSTIAKF LDRSGPGIQQ MAYRVTDVEA
VAAILRERGL RLLYDEPRRG TSKSRVNFIH PKDAGGILVE LVEPATEPAD
|
|---|
| |