More than 300 homologs were found in PanDaTox collection
for query gene Pfl01_0984 on replicon NC_007492
Organism: Pseudomonas fluorescens Pf0-1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_007492  Pfl01_0984  histone-like DNA-binding protein  100 
 
 
93 aa  180  6e-45  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_004578  PSPTO_1266  DNA-binding protein HU family  90.32 
 
 
93 aa  162  2.0000000000000002e-39  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0975  histone family protein DNA-binding protein  86.02 
 
 
93 aa  157  4e-38  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1013  histone family protein DNA-binding protein  86.02 
 
 
93 aa  157  4e-38  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0981  histone family protein DNA-binding protein  86.02 
 
 
93 aa  157  4e-38  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_010501  PputW619_4242  histone family protein DNA-binding protein  84.95 
 
 
93 aa  157  6e-38  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1084  histone-like DNA-binding protein  86.02 
 
 
93 aa  154  4e-37  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.66671 
 
 
-
 
NC_009656  PSPA7_1168  putative DNA binding protein  80.43 
 
 
93 aa  142  1e-33  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_12900  putative DNA binding protein  79.35 
 
 
93 aa  141  3e-33  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_009439  Pmen_2651  histone family protein DNA-binding protein  76.09 
 
 
92 aa  141  4e-33  Pseudomonas mendocina ymp  Bacteria  normal  0.532078  normal 
 
 
-
 
NC_011769  DvMF_2029  histone family protein DNA-binding protein  45.74 
 
 
95 aa  87.8  5e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_007947  Mfla_2724  histone-like DNA-binding protein  54.44 
 
 
90 aa  85.1  3e-16  Methylobacillus flagellatus KT  Bacteria  normal  0.032856  normal 
 
 
-
 
NC_009952  Dshi_3288  DNA-binding protein HU  50 
 
 
96 aa  84.7  4e-16  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.36981  normal 
 
 
-
 
NC_008044  TM1040_2801  histone-like DNA-binding protein  45.56 
 
 
97 aa  84.7  4e-16  Ruegeria sp. TM1040  Bacteria  normal  normal  0.821949 
 
 
-
 
NC_009428  Rsph17025_2795  histone family protein DNA-binding protein  46.67 
 
 
95 aa  81.6  0.000000000000003  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  48.89 
 
 
91 aa  80.5  0.000000000000006  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_009049  Rsph17029_0055  histone family protein DNA-binding protein  45.56 
 
 
95 aa  80.9  0.000000000000006  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0808808  normal 
 
 
-
 
NC_007493  RSP_1388  DNA-binding protein HU, form N  45.56 
 
 
95 aa  80.9  0.000000000000006  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.082303  n/a   
 
 
-
 
NC_009636  Smed_0875  histone family protein DNA-binding protein  43.33 
 
 
90 aa  80.9  0.000000000000006  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal 
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  48.89 
 
 
91 aa  80.1  0.000000000000009  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  48.35 
 
 
91 aa  80.1  0.00000000000001  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  40 
 
 
90 aa  79  0.00000000000002  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_011369  Rleg2_1250  histone family protein DNA-binding protein  43.33 
 
 
91 aa  79  0.00000000000002  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_1341  histone family protein DNA-binding protein  43.33 
 
 
91 aa  78.6  0.00000000000003  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  48.89 
 
 
98 aa  78.2  0.00000000000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  45.56 
 
 
90 aa  76.6  0.0000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  42.22 
 
 
90 aa  76.6  0.0000000000001  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  46.67 
 
 
90 aa  76.3  0.0000000000001  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  43.33 
 
 
90 aa  76.3  0.0000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  43.33 
 
 
90 aa  76.3  0.0000000000001  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_003295  RSc2521  DNA-binding protein HU-beta  44.44 
 
 
94 aa  75.9  0.0000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0944475  normal  0.0105947 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  44.44 
 
 
94 aa  75.9  0.0000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal 
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  47.19 
 
 
90 aa  75.5  0.0000000000002  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  44.44 
 
 
90 aa  76.3  0.0000000000002  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2337  histone-like DNA-binding protein  47.78 
 
 
90 aa  75.5  0.0000000000002  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000498066  n/a   
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  44.44 
 
 
94 aa  75.9  0.0000000000002  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  47.78 
 
 
90 aa  74.7  0.0000000000004  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  47.78 
 
 
90 aa  74.7  0.0000000000004  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  47.78 
 
 
90 aa  74.7  0.0000000000004  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  44.44 
 
 
90 aa  74.3  0.0000000000005  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_008609  Ppro_1912  histone family protein DNA-binding protein  42.53 
 
 
88 aa  74.3  0.0000000000005  Pelobacter propionicus DSM 2379  Bacteria  normal  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  44.44 
 
 
90 aa  74.3  0.0000000000006  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  46.67 
 
 
90 aa  73.9  0.0000000000007  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_007802  Jann_0336  histone-like DNA-binding protein  44.44 
 
 
96 aa  73.9  0.0000000000007  Jannaschia sp. CCS1  Bacteria  normal  normal  0.810596 
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  43.33 
 
 
90 aa  73.9  0.0000000000007  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  44.44 
 
 
91 aa  73.6  0.0000000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  45.56 
 
 
90 aa  73.9  0.0000000000008  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_010730  SYO3AOP1_1546  histone family protein DNA-binding protein  41.76 
 
 
92 aa  73.6  0.0000000000008  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  4.0402e-16  n/a   
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  42.86 
 
 
92 aa  73.6  0.0000000000009  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  43.33 
 
 
91 aa  73.2  0.000000000001  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  46.67 
 
 
90 aa  72.8  0.000000000001  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_009511  Swit_2320  histone family protein DNA-binding protein  44.83 
 
 
91 aa  73.2  0.000000000001  Sphingomonas wittichii RW1  Bacteria  normal  normal  0.0313993 
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  44.44 
 
 
91 aa  73.2  0.000000000001  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  46.67 
 
 
90 aa  72.8  0.000000000001  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_010338  Caul_1806  histone family protein DNA-binding protein  50.68 
 
 
92 aa  72.8  0.000000000001  Caulobacter sp. K31  Bacteria  normal  normal  0.109803 
 
 
-
 
NC_004310  BR1105  DNA-binding protein HU  44.44 
 
 
91 aa  72.8  0.000000000002  Brucella suis 1330  Bacteria  normal  0.965912  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  41.76 
 
 
94 aa  72.4  0.000000000002  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  41.11 
 
 
90 aa  72.4  0.000000000002  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  41.76 
 
 
94 aa  72.4  0.000000000002  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  40 
 
 
90 aa  72.4  0.000000000002  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010338  Caul_2219  histone family protein DNA-binding protein  47.95 
 
 
92 aa  71.6  0.000000000003  Caulobacter sp. K31  Bacteria  normal  0.789532  normal  0.340698 
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  47.78 
 
 
90 aa  71.6  0.000000000003  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  47.78 
 
 
90 aa  71.6  0.000000000003  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_008009  Acid345_0082  histone-like DNA-binding protein  39.33 
 
 
98 aa  71.6  0.000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  42.22 
 
 
90 aa  71.6  0.000000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_007519  Dde_0125  histone-like DNA-binding protein  40.43 
 
 
95 aa  71.2  0.000000000004  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  46.67 
 
 
90 aa  71.2  0.000000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  43.33 
 
 
90 aa  71.6  0.000000000004  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  43.33 
 
 
90 aa  71.6  0.000000000004  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  45.56 
 
 
90 aa  71.2  0.000000000004  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  43.33 
 
 
90 aa  71.6  0.000000000004  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_002977  MCA2947  prophage MuMc02, DNA-binding protein HU  42.86 
 
 
95 aa  71.2  0.000000000005  Methylococcus capsulatus str. Bath  Bacteria  normal  0.437492  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  46.67 
 
 
101 aa  71.2  0.000000000005  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  43.33 
 
 
90 aa  70.9  0.000000000006  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  43.33 
 
 
90 aa  70.5  0.000000000007  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  44.44 
 
 
91 aa  70.9  0.000000000007  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  42.22 
 
 
90 aa  70.5  0.000000000007  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  43.33 
 
 
90 aa  70.5  0.000000000008  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_009675  Anae109_4352  histone family protein DNA-binding protein  38.71 
 
 
123 aa  70.1  0.000000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.614172 
 
 
-
 
NC_011769  DvMF_2799  histone family protein DNA-binding protein  46.15 
 
 
91 aa  70.1  0.000000000009  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  43.33 
 
 
90 aa  70.1  0.000000000009  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  70.1  0.000000000009  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_011891  A2cp1_4358  histone family protein DNA-binding protein  39.56 
 
 
95 aa  69.7  0.00000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.847271  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.7  0.00000000001  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.7  0.00000000001  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011145  AnaeK_4335  histone family protein DNA-binding protein  39.56 
 
 
95 aa  69.7  0.00000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.7  0.00000000001  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011662  Tmz1t_0440  histone family protein DNA-binding protein  38.46 
 
 
91 aa  70.1  0.00000000001  Thauera sp. MZ1T  Bacteria  normal  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.7  0.00000000001  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  44.44 
 
 
90 aa  69.7  0.00000000001  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.7  0.00000000001  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_007760  Adeh_4203  histone-like DNA-binding protein  39.56 
 
 
95 aa  69.7  0.00000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_009475  BBta_p0009  histone-like DNA-binding protein  40.45 
 
 
130 aa  69.7  0.00000000001  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.101373 
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  42.22 
 
 
90 aa  69.7  0.00000000001  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_011989  Avi_1701  HU-like DNA-binding protein alpha subunit  43.33 
 
 
91 aa  69.3  0.00000000001  Agrobacterium vitis S4  Bacteria  normal  0.512418  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  45.56 
 
 
90 aa  69.3  0.00000000002  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  44.44 
 
 
90 aa  68.9  0.00000000002  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.3  0.00000000002  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  45.56 
 
 
90 aa  69.3  0.00000000002  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_008686  Pden_0405  histone family protein DNA-binding protein  45.56 
 
 
99 aa  69.3  0.00000000002  Paracoccus denitrificans PD1222  Bacteria  normal  normal  0.479786 
 
 
-
 
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