| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Avi_1701 |
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| Symbol | hupA |
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| ID | 7386703 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Agrobacterium vitis S4 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_011989 |
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| Strand | + |
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| Start bp | 1419015 |
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| End bp | 1419290 |
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| Gene Length | 276 bp |
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| Protein Length | 91 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 643651020 |
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| Product | HU-like DNA-binding protein alpha subunit |
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| Protein accession | YP_002549224 |
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| Protein GI | 222148267 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0776] Bacterial nucleoid DNA-binding protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.512418 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAACAAGT CCGAACTCGT AAACGCAGTT GCCGATAAGG CCGGTCTCAG CAAGGCCGAC
GCAGCTTCCG CCGTGGACGC CGTCTTTGAC ACCGTCCAGG CGGAATTGAA GAATGGTGGC
GACATTCGCC TCGCCGGTTT TGGCGCCTTC ACGGTTTCCC ATCGCGAAGC CTCGAAGGGC
CGCAATCCTT CGACTGGCGC GGAAGTTGAT ATTCCGGCCC GTAACGTTCC GAAGTTCACG
GCCGGCAAGG GCCTGAAGGA CGCTGTTAAC AGCTGA
|
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| Protein sequence | MNKSELVNAV ADKAGLSKAD AASAVDAVFD TVQAELKNGG DIRLAGFGAF TVSHREASKG
RNPSTGAEVD IPARNVPKFT AGKGLKDAVN S
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