More than 300 homologs were found in PanDaTox collection
for query gene SYO3AOP1_1546 on replicon NC_010730
Organism: Sulfurihydrogenibium sp. YO3AOP1



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_010730  SYO3AOP1_1546  histone family protein DNA-binding protein  100 
 
 
92 aa  172  1.9999999999999998e-42  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  4.0402e-16  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0867  histone family protein DNA-binding protein  83.7 
 
 
92 aa  132  1.9999999999999998e-30  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  2.6253e-16  n/a   
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  57.3 
 
 
90 aa  99.4  2e-20  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  52.22 
 
 
90 aa  97.8  4e-20  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_004310  BR1105  DNA-binding protein HU  53.33 
 
 
91 aa  97.8  5e-20  Brucella suis 1330  Bacteria  normal  0.965912  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  51.65 
 
 
91 aa  97.1  7e-20  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_011126  HY04AAS1_1051  histone family protein DNA-binding protein  53.49 
 
 
89 aa  97.1  7e-20  Hydrogenobaculum sp. Y04AAS1  Bacteria  unclonable  0.00000000000000497636  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  54.95 
 
 
91 aa  96.7  9e-20  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  51.11 
 
 
90 aa  96.3  1e-19  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  53.33 
 
 
91 aa  96.7  1e-19  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  54.44 
 
 
91 aa  96.7  1e-19  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  51.11 
 
 
90 aa  95.9  2e-19  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  53.26 
 
 
92 aa  95.9  2e-19  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  52.22 
 
 
91 aa  95.9  2e-19  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  55.06 
 
 
90 aa  94.4  4e-19  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  55.06 
 
 
90 aa  94.4  4e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  55.06 
 
 
90 aa  94.4  4e-19  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  52.22 
 
 
90 aa  94  6e-19  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  48.89 
 
 
90 aa  94  7e-19  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_013173  Dbac_2463  histone family protein DNA-binding protein  53.93 
 
 
90 aa  92.8  1e-18  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0228112  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  52.22 
 
 
95 aa  93.2  1e-18  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  51.69 
 
 
90 aa  93.2  1e-18  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  51.69 
 
 
90 aa  93.2  1e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  91.7  3e-18  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  48.91 
 
 
92 aa  91.7  3e-18  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  53.85 
 
 
91 aa  92  3e-18  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_011769  DvMF_0500  histone family protein DNA-binding protein  49.44 
 
 
90 aa  91.7  3e-18  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    hitchhiker  0.000759527 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  91.7  3e-18  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  91.7  3e-18  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  50 
 
 
90 aa  91.3  4e-18  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  52.22 
 
 
90 aa  91.3  4e-18  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  47.78 
 
 
91 aa  91.3  4e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  50 
 
 
90 aa  91.3  4e-18  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  51.69 
 
 
90 aa  90.9  5e-18  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  52.75 
 
 
91 aa  90.9  6e-18  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_008751  Dvul_2207  histone family protein DNA-binding protein  53.33 
 
 
91 aa  90.5  7e-18  Desulfovibrio vulgaris DP4  Bacteria  normal  0.976216  normal  0.483194 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  50.55 
 
 
91 aa  90.5  7e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  50 
 
 
92 aa  90.5  7e-18  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  50 
 
 
90 aa  90.5  7e-18  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  51.11 
 
 
91 aa  90.5  8e-18  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  48.89 
 
 
90 aa  89.7  1e-17  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_011883  Ddes_0087  histone family protein DNA-binding protein  54.44 
 
 
91 aa  89.7  1e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  n/a   
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  52.17 
 
 
92 aa  89.7  1e-17  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  50 
 
 
90 aa  90.1  1e-17  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_009380  Strop_4159  histone family protein DNA-binding protein  49.45 
 
 
91 aa  89.7  1e-17  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  51.69 
 
 
92 aa  90.1  1e-17  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_011769  DvMF_2799  histone family protein DNA-binding protein  54.44 
 
 
91 aa  89.7  1e-17  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008554  Sfum_2107  histone family protein DNA-binding protein  48.31 
 
 
90 aa  89.7  1e-17  Syntrophobacter fumaroxidans MPOB  Bacteria  decreased coverage  0.00000844989  hitchhiker  0.00906741 
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  51.11 
 
 
90 aa  89  2e-17  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  51.11 
 
 
90 aa  89  2e-17  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_003295  RSc2521  DNA-binding protein HU-beta  51.65 
 
 
94 aa  88.6  2e-17  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0944475  normal  0.0105947 
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  51.11 
 
 
90 aa  89  2e-17  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  51.65 
 
 
94 aa  88.6  2e-17  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  51.11 
 
 
90 aa  89  2e-17  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  50.56 
 
 
91 aa  89  2e-17  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  50.56 
 
 
96 aa  89  2e-17  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  51.65 
 
 
94 aa  88.6  2e-17  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal 
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  51.11 
 
 
90 aa  89  2e-17  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  89  2e-17  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_008751  Dvul_1364  histone family protein DNA-binding protein  49.44 
 
 
90 aa  88.6  3e-17  Desulfovibrio vulgaris DP4  Bacteria  normal  normal 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  88.6  3e-17  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  88.6  3e-17  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  48.89 
 
 
90 aa  88.6  3e-17  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  47.78 
 
 
94 aa  88.6  3e-17  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_007604  Synpcc7942_1108  nucleoid protein Hbs  45.56 
 
 
91 aa  88.6  3e-17  Synechococcus elongatus PCC 7942  Bacteria  normal  0.0932961  normal  0.770831 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  88.6  3e-17  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  88.6  3e-17  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  50 
 
 
101 aa  88.6  3e-17  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  51.11 
 
 
90 aa  88.6  3e-17  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  50 
 
 
90 aa  87.8  4e-17  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  47.78 
 
 
90 aa  87.8  4e-17  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  50 
 
 
90 aa  87.8  4e-17  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  50 
 
 
90 aa  87.8  5e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  48.89 
 
 
91 aa  87.4  5e-17  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  5e-17  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_009972  Haur_3398  histone family protein DNA-binding protein  44.57 
 
 
92 aa  87.8  5e-17  Herpetosiphon aurantiacus ATCC 23779  Bacteria  hitchhiker  0.000223697  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  46.67 
 
 
90 aa  87.8  5e-17  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  52.22 
 
 
90 aa  87.8  5e-17  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009636  Smed_0875  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  50 
 
 
90 aa  87.4  6e-17  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  46.67 
 
 
90 aa  87.4  7e-17  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  51.11 
 
 
90 aa  87  7e-17  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  50 
 
 
90 aa  87  7e-17  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  48.89 
 
 
90 aa  87  8e-17  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  48.31 
 
 
90 aa  86.7  9e-17  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
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