More than 300 homologs were found in PanDaTox collection
for query gene Smed_0875 on replicon NC_009636
Organism: Sinorhizobium medicae WSM419



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Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_009636  Smed_0875  histone family protein DNA-binding protein  100 
 
 		 90 aa  177  4.999999999999999e-44  Sinorhizobium medicae WSM419  Bacteria  normal  0.757232  normal  1 
 
 
-
 
NC_008254  Meso_1172  histone-like DNA-binding protein  84.44 
 
 		 90 aa  154  3e-37  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_011369  Rleg2_1250  histone family protein DNA-binding protein  83.33 
 
 		 91 aa  153  7e-37  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012850  Rleg_1341  histone family protein DNA-binding protein  82.22 
 
 		 91 aa  151  2.9999999999999998e-36  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011989  Avi_1701  HU-like DNA-binding protein alpha subunit  88.89 
 
 		 91 aa  141  2e-33  Agrobacterium vitis S4  Bacteria  normal  0.512418  n/a   
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  74.44 
 
 		 91 aa  131  3e-30  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  73.33 
 
 		 91 aa  130  7.999999999999999e-30  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_004310  BR1105  DNA-binding protein HU  72.22 
 
 		 91 aa  128  2.0000000000000002e-29  Brucella suis 1330  Bacteria  normal  0.965912  n/a   
 
 
-
 
NC_008048  Sala_0799  histone-like DNA-binding protein  65.56 
 
 		 90 aa  120  6e-27  Sphingopyxis alaskensis RB2256  Bacteria  normal  1  normal  0.0173855 
 
 
-
 
NC_007643  Rru_A1553  histone-like DNA-binding protein  64.44 
 
 		 91 aa  119  1.9999999999999998e-26  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  1  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  64.44 
 
 		 91 aa  119  1.9999999999999998e-26  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008783  BARBAKC583_0550  DNA-binding protein HU-beta  64.44 
 
 		 92 aa  118  3e-26  Bartonella bacilliformis KC583  Bacteria  normal  0.169626  n/a   
 
 
-
 
NC_007794  Saro_1362  histone-like DNA-binding protein  63.33 
 
 		 90 aa  115  3e-25  Novosphingobium aromaticivorans DSM 12444  Bacteria  normal  0.102123  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  61.8 
 
 		 90 aa  113  1.0000000000000001e-24  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  61.8 
 
 		 90 aa  113  1.0000000000000001e-24  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  61.8 
 
 		 90 aa  113  1.0000000000000001e-24  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_009511  Swit_0045  histone family protein DNA-binding protein  58.89 
 
 		 90 aa  110  6e-24  Sphingomonas wittichii RW1  Bacteria  decreased coverage  0.00000165888  normal  1 
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  59.55 
 
 		 90 aa  109  1.0000000000000001e-23  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  59.55 
 
 		 90 aa  109  1.0000000000000001e-23  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  55.56 
 
 		 90 aa  107  6e-23  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_009513  Lreu_0765  nucleoid protein Hbs  59.09 
 
 		 91 aa  106  1e-22  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000296782  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  57.3 
 
 		 90 aa  103  9e-22  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  57.3 
 
 		 90 aa  103  9e-22  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  57.3 
 
 		 90 aa  103  9e-22  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  55.56 
 
 		 90 aa  102  2e-21  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008346  Swol_0083  DNA-binding protein HU (DNA-binding protein II)  53.93 
 
 		 90 aa  102  2e-21  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  1  n/a   
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  55.06 
 
 		 91 aa  102  2e-21  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
NC_011312  VSAL_I2846  DNA-binding protein HU-alpha  53.33 
 
 		 90 aa  102  2e-21  Aliivibrio salmonicida LFI1238  Bacteria  decreased coverage  0.00368421  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  55.56 
 
 		 90 aa  101  3e-21  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008531  LEUM_1290  nucleoid protein Hbs  57.95 
 
 		 91 aa  102  3e-21  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00000854913  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  57.3 
 
 		 90 aa  101  3e-21  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  54.44 
 
 		 90 aa  101  4e-21  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  56.82 
 
 		 91 aa  100  7e-21  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  54.44 
 
 		 90 aa  100  8e-21  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  55.56 
 
 		 90 aa  99.8  1e-20  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  1  n/a   
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  53.33 
 
 		 90 aa  99.4  1e-20  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  54.44 
 
 		 90 aa  99.8  1e-20  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal  1 
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  55.56 
 
 		 91 aa  99.8  1e-20  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  53.33 
 
 		 90 aa  99.4  1e-20  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  56.67 
 
 		 90 aa  99.8  1e-20  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  55.56 
 
 		 90 aa  99.4  1e-20  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal  1 
 
 
-
 
NC_012560  Avin_43920  histone-like DNA-binding protein  54.44 
 
 		 90 aa  99.8  1e-20  Azotobacter vinelandii DJ  Bacteria  normal  1  n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  52.22 
 
 		 91 aa  99  2e-20  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  52.22 
 
 		 101 aa  98.6  2e-20  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  52.22 
 
 		 92 aa  99.4  2e-20  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  54.44 
 
 		 90 aa  98.6  3e-20  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  54.44 
 
 		 90 aa  97.8  4e-20  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal  1 
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  54.44 
 
 		 90 aa  97.8  4e-20  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_011365  Gdia_3327  histone family protein DNA-binding protein  55.56 
 
 		 94 aa  97.8  4e-20  Gluconacetobacter diazotrophicus PAl 5  Bacteria  normal  0.372094  normal  0.0697763 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  55.56 
 
 		 90 aa  97.8  4e-20  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal  1 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  54.44 
 
 		 90 aa  97.4  5e-20  Yersinia pseudotuberculosis YPIII  Bacteria  normal  1  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  56.67 
 
 		 95 aa  97.8  5e-20  Ammonifex degensii KC4  Bacteria  normal  1  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  54.44 
 
 		 90 aa  97.4  5e-20  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  54.44 
 
 		 90 aa  97.4  5e-20  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal  1 
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  56.67 
 
 		 90 aa  97.4  6e-20  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  53.33 
 
 		 90 aa  97.1  6e-20  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010814  Glov_1926  histone family protein DNA-binding protein  54.44 
 
 		 92 aa  97.4  6e-20  Geobacter lovleyi SZ  Bacteria  unclonable  0.0000000201993  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  52.22 
 
 		 96 aa  97.4  6e-20  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal  1 
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  56.67 
 
 		 90 aa  97.4  6e-20  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  52.22 
 
 		 91 aa  97.1  7e-20  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_009140  SNSL254_pSN254_0022  DNA-binding protein HU  53.33 
 
 		 90 aa  97.1  8e-20  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  hitchhiker  0.00102315  hitchhiker  0.000567997 
 
 
-
 
NC_013456  VEA_002182  DNA-binding protein HU-alpha  51.11 
 
 		 90 aa  96.7  9e-20  Vibrio sp. Ex25  Bacteria  normal  0.131368  n/a   
 
 
-
 
NC_010322  PputGB1_1905  histone family protein DNA-binding protein  56.67 
 
 		 90 aa  96.7  1e-19  Pseudomonas putida GB-1  Bacteria  normal  0.173408  hitchhiker  0.000216257 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  53.33 
 
 		 90 aa  96.3  1e-19  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  52.22 
 
 		 91 aa  96.3  1e-19  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  54.44 
 
 		 90 aa  96.3  1e-19  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  1  normal  0.171237 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  53.33 
 
 		 90 aa  95.9  1e-19  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  49.44 
 
 		 90 aa  95.5  2e-19  Vibrio cholerae O395  Bacteria  normal  1  n/a   
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  55.56 
 
 		 90 aa  95.5  2e-19  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal  1 
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  53.93 
 
 		 90 aa  95.5  2e-19  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  51.11 
 
 		 91 aa  95.5  2e-19  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus cereus AH187  Bacteria  normal  1  n/a   
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus cereus E33L  Bacteria  normal  1  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus cereus G9842  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  51.11 
 
 		 90 aa  95.1  3e-19  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  51.11 
 
 		 90 aa  95.1  3e-19  Acidovorax ebreus TPSY  Bacteria  normal  1  n/a   
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  55.56 
 
 		 90 aa  94.7  3e-19  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  1  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  53.93 
 
 		 90 aa  95.1  3e-19  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  52.22 
 
 		 90 aa  94.7  3e-19  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  51.11 
 
 		 90 aa  94.7  3e-19  Shewanella frigidimarina NCIMB 400  Bacteria  normal  1  n/a   
 
 
-
 
NC_011311  VSAL_p840_28  DNA-binding protein HU-alpha  51.11 
 
 		 91 aa  95.1  3e-19  Aliivibrio salmonicida LFI1238  Bacteria  normal  1  n/a   
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  51.69 
 
 		 92 aa  95.1  3e-19  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  52.81 
 
 		 90 aa  94.7  3e-19  Bacillus cereus AH820  Bacteria  n/a    normal  1 
 
 
-
 
NC_012880  Dd703_3710  transcriptional regulator HU subunit alpha  52.81 
 
 		 90 aa  95.1  3e-19  Dickeya dadantii Ech703  Bacteria  normal  0.273113  n/a   
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  51.11 
 
 		 90 aa  94.7  4e-19  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  47.78 
 
 		 91 aa  94.4  4e-19  Psychromonas ingrahamii 37  Bacteria  normal  1  normal  0.585838 
 
 
-
 
NC_012917  PC1_0222  transcriptional regulator HU subunit alpha  51.69 
 
 		 90 aa  94  5e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.390191  n/a   
 
 
-
 
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