More than 300 homologs were found in PanDaTox collection
for query gene PA14_12900 on replicon NC_008463
Organism: Pseudomonas aeruginosa UCBPP-PA14



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008463  PA14_12900  putative DNA binding protein  100 
 
 
93 aa  182  1.0000000000000001e-45  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_009656  PSPA7_1168  putative DNA binding protein  96.77 
 
 
93 aa  176  1e-43  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2651  histone family protein DNA-binding protein  82.61 
 
 
92 aa  154  3e-37  Pseudomonas mendocina ymp  Bacteria  normal  0.532078  normal 
 
 
-
 
NC_004578  PSPTO_1266  DNA-binding protein HU family  80.43 
 
 
93 aa  144  4.0000000000000006e-34  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  n/a   
 
 
-
 
NC_002947  PP_0975  histone family protein DNA-binding protein  78.26 
 
 
93 aa  141  3e-33  Pseudomonas putida KT2440  Bacteria  normal  normal 
 
 
-
 
NC_010322  PputGB1_0981  histone family protein DNA-binding protein  78.26 
 
 
93 aa  141  3e-33  Pseudomonas putida GB-1  Bacteria  normal  normal 
 
 
-
 
NC_009512  Pput_1013  histone family protein DNA-binding protein  78.26 
 
 
93 aa  141  3e-33  Pseudomonas putida F1  Bacteria  normal  normal 
 
 
-
 
NC_007492  Pfl01_0984  histone-like DNA-binding protein  79.35 
 
 
93 aa  141  3e-33  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007005  Psyr_1084  histone-like DNA-binding protein  79.35 
 
 
93 aa  140  5e-33  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  normal  0.66671 
 
 
-
 
NC_010501  PputW619_4242  histone family protein DNA-binding protein  77.17 
 
 
93 aa  139  9e-33  Pseudomonas putida W619  Bacteria  normal  normal 
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  47.78 
 
 
90 aa  84  6e-16  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_007947  Mfla_2724  histone-like DNA-binding protein  49.45 
 
 
90 aa  84.3  6e-16  Methylobacillus flagellatus KT  Bacteria  normal  0.032856  normal 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  44.44 
 
 
90 aa  82.8  0.000000000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_003910  CPS_1873  HU family DNA-binding protein  46.67 
 
 
91 aa  82  0.000000000000003  Colwellia psychrerythraea 34H  Bacteria  normal  0.972501  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  48.89 
 
 
98 aa  82  0.000000000000003  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  46.15 
 
 
91 aa  80.9  0.000000000000005  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_010681  Bphyt_1909  histone family protein DNA-binding protein  46.67 
 
 
90 aa  80.5  0.000000000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  0.715849  normal 
 
 
-
 
NC_011369  Rleg2_1250  histone family protein DNA-binding protein  41.76 
 
 
91 aa  80.5  0.000000000000007  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_010002  Daci_2879  histone family protein DNA-binding protein  46.67 
 
 
90 aa  80.5  0.000000000000007  Delftia acidovorans SPH-1  Bacteria  normal  normal 
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  46.15 
 
 
94 aa  80.1  0.000000000000008  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_010622  Bphy_1014  histone family protein DNA-binding protein  47.78 
 
 
90 aa  80.5  0.000000000000008  Burkholderia phymatum STM815  Bacteria  normal  0.385833  normal 
 
 
-
 
NC_007951  Bxe_A2292  nucleoid protein Hbs  47.78 
 
 
90 aa  80.5  0.000000000000008  Burkholderia xenovorans LB400  Bacteria  normal  0.337722  normal  0.315371 
 
 
-
 
NC_012850  Rleg_1341  histone family protein DNA-binding protein  41.76 
 
 
91 aa  80.1  0.000000000000009  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA2947  prophage MuMc02, DNA-binding protein HU  46.24 
 
 
95 aa  80.1  0.000000000000009  Methylococcus capsulatus str. Bath  Bacteria  normal  0.437492  n/a   
 
 
-
 
NC_003295  RSc1714  DNA-binding protein HU-beta  45.56 
 
 
90 aa  79  0.00000000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.606946  normal  0.0324854 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  45.56 
 
 
90 aa  79.3  0.00000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_010682  Rpic_1866  histone family protein DNA-binding protein  45.56 
 
 
90 aa  79.3  0.00000000000002  Ralstonia pickettii 12J  Bacteria  normal  0.0187787  hitchhiker  0.00274705 
 
 
-
 
NC_007614  Nmul_A2337  histone-like DNA-binding protein  46.67 
 
 
90 aa  79.3  0.00000000000002  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000498066  n/a   
 
 
-
 
NC_008781  Pnap_1633  histone family protein DNA-binding protein  45.56 
 
 
90 aa  79  0.00000000000002  Polaromonas naphthalenivorans CJ2  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_1533  histone family protein DNA-binding protein  45.56 
 
 
90 aa  79.3  0.00000000000002  Ralstonia pickettii 12D  Bacteria  normal  0.753498  normal  0.353479 
 
 
-
 
NC_008752  Aave_1666  histone family protein DNA-binding protein  45.56 
 
 
90 aa  79.3  0.00000000000002  Acidovorax citrulli AAC00-1  Bacteria  normal  normal 
 
 
-
 
NC_009380  Strop_4159  histone family protein DNA-binding protein  41.11 
 
 
91 aa  79.3  0.00000000000002  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_008786  Veis_2697  histone family protein DNA-binding protein  44.57 
 
 
105 aa  79  0.00000000000002  Verminephrobacter eiseniae EF01-2  Bacteria  normal  normal  0.651283 
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  45.56 
 
 
91 aa  78.6  0.00000000000003  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_008782  Ajs_2621  histone family protein DNA-binding protein  45.56 
 
 
90 aa  78.6  0.00000000000003  Acidovorax sp. JS42  Bacteria  normal  0.348082  normal  0.0833374 
 
 
-
 
NC_011992  Dtpsy_1187  histone family protein DNA-binding protein  45.56 
 
 
90 aa  78.6  0.00000000000003  Acidovorax ebreus TPSY  Bacteria  normal  n/a   
 
 
-
 
NC_007517  Gmet_0355  histone-like DNA-binding protein  46.07 
 
 
94 aa  78.6  0.00000000000003  Geobacter metallireducens GS-15  Bacteria  hitchhiker  0.00204011  normal  0.390975 
 
 
-
 
NC_007948  Bpro_3065  nucleoid protein Hbs  45.56 
 
 
90 aa  78.6  0.00000000000003  Polaromonas sp. JS666  Bacteria  normal  0.135138  normal  0.394857 
 
 
-
 
NC_011769  DvMF_2029  histone family protein DNA-binding protein  39.78 
 
 
95 aa  78.6  0.00000000000003  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal 
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  46.67 
 
 
90 aa  78.6  0.00000000000003  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_007517  Gmet_1608  histone-like DNA-binding protein  45.05 
 
 
96 aa  78.2  0.00000000000004  Geobacter metallireducens GS-15  Bacteria  unclonable  5.49082e-20  normal 
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  44.44 
 
 
90 aa  78.2  0.00000000000004  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  47.78 
 
 
101 aa  77.4  0.00000000000005  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  47.78 
 
 
90 aa  77.4  0.00000000000006  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  47.78 
 
 
91 aa  77.4  0.00000000000006  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009952  Dshi_3288  DNA-binding protein HU  46.15 
 
 
96 aa  77.4  0.00000000000007  Dinoroseobacter shibae DFL 12  Bacteria  normal  0.36981  normal 
 
 
-
 
NC_008044  TM1040_2801  histone-like DNA-binding protein  41.76 
 
 
97 aa  77.4  0.00000000000007  Ruegeria sp. TM1040  Bacteria  normal  normal  0.821949 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  45.56 
 
 
90 aa  77  0.00000000000007  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  77  0.00000000000008  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  77  0.00000000000008  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  77  0.00000000000008  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  44.44 
 
 
90 aa  77  0.00000000000008  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  77  0.00000000000008  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  77  0.00000000000008  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_009483  Gura_4407  histone family protein DNA-binding protein  43.82 
 
 
94 aa  77  0.00000000000009  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000192025  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009475  BBta_p0009  histone-like DNA-binding protein  42.22 
 
 
130 aa  76.3  0.0000000000001  Bradyrhizobium sp. BTAi1  Bacteria  n/a    normal  0.101373 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  44.44 
 
 
90 aa  76.3  0.0000000000001  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  44.44 
 
 
90 aa  76.6  0.0000000000001  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  45.56 
 
 
91 aa  76.6  0.0000000000001  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  43.33 
 
 
90 aa  76.6  0.0000000000001  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  45.56 
 
 
90 aa  76.3  0.0000000000001  Methylobacillus flagellatus KT  Bacteria  normal  normal 
 
 
-
 
NC_012892  B21_00396  hypothetical protein  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  76.3  0.0000000000001  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  46.67 
 
 
90 aa  76.3  0.0000000000001  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_010338  Caul_1806  histone family protein DNA-binding protein  48.65 
 
 
92 aa  75.5  0.0000000000002  Caulobacter sp. K31  Bacteria  normal  normal  0.109803 
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  44.44 
 
 
90 aa  75.5  0.0000000000002  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_012791  Vapar_1789  histone family protein DNA-binding protein  42.22 
 
 
90 aa  75.9  0.0000000000002  Variovorax paradoxus S110  Bacteria  normal  0.970942  n/a   
 
 
-
 
NC_008825  Mpe_A1956  nucleoid protein Hbs  43.33 
 
 
90 aa  75.5  0.0000000000002  Methylibium petroleiphilum PM1  Bacteria  normal  0.582961  normal  0.45981 
 
 
-
 
NC_008009  Acid345_4704  histone-like DNA-binding protein  44.44 
 
 
93 aa  75.5  0.0000000000002  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal  0.833222 
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  45.56 
 
 
90 aa  75.9  0.0000000000002  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  44.44 
 
 
90 aa  75.5  0.0000000000002  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  45.56 
 
 
90 aa  75.9  0.0000000000002  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  43.33 
 
 
90 aa  75.9  0.0000000000002  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_009428  Rsph17025_2795  histone family protein DNA-binding protein  44.44 
 
 
95 aa  75.9  0.0000000000002  Rhodobacter sphaeroides ATCC 17025  Bacteria  normal  normal 
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  42.86 
 
 
91 aa  75.5  0.0000000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_009783  VIBHAR_00213  DNA-binding protein  45.56 
 
 
101 aa  75.1  0.0000000000003  Vibrio harveyi ATCC BAA-1116  Bacteria  n/a    n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  42.22 
 
 
90 aa  75.5  0.0000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  44.44 
 
 
90 aa  75.1  0.0000000000003  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  46.67 
 
 
90 aa  75.1  0.0000000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_008009  Acid345_0082  histone-like DNA-binding protein  43.82 
 
 
98 aa  75.1  0.0000000000003  Candidatus Koribacter versatilis Ellin345  Bacteria  normal  normal 
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  46.67 
 
 
90 aa  75.1  0.0000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  46.67 
 
 
90 aa  75.1  0.0000000000003  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_009457  VC0395_A2650  DNA-binding protein HU  47.19 
 
 
90 aa  74.7  0.0000000000004  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_007493  RSP_1388  DNA-binding protein HU, form N  43.33 
 
 
95 aa  74.7  0.0000000000004  Rhodobacter sphaeroides 2.4.1  Bacteria  normal  0.082303  n/a   
 
 
-
 
NC_009049  Rsph17029_0055  histone family protein DNA-binding protein  43.33 
 
 
95 aa  74.7  0.0000000000004  Rhodobacter sphaeroides ATCC 17029  Bacteria  normal  0.0808808  normal 
 
 
-
 
NC_008309  HS_1538  DNA-binding protein HU  44.44 
 
 
91 aa  74.7  0.0000000000004  Haemophilus somnus 129PT  Bacteria  unclonable  0.0000000000676058  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  43.33 
 
 
90 aa  74.7  0.0000000000004  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  43.33 
 
 
90 aa  74.3  0.0000000000005  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  43.33 
 
 
90 aa  74.3  0.0000000000005  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  43.33 
 
 
90 aa  74.3  0.0000000000005  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  43.33 
 
 
90 aa  74.3  0.0000000000005  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  43.33 
 
 
90 aa  74.3  0.0000000000005  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  43.33 
 
 
90 aa  74.3  0.0000000000005  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  43.33 
 
 
91 aa  74.3  0.0000000000005  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>