| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_3288 |
|---|
| Symbol | hup |
|---|
| ID | 5712345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009952 |
|---|
| Strand | - |
|---|
| Start bp | 3454254 |
|---|
| End bp | 3454544 |
|---|
| Gene Length | 291 bp |
|---|
| Protein Length | 96 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641269216 |
|---|
| Product | DNA-binding protein HU |
|---|
| Protein accession | YP_001534622 |
|---|
| Protein GI | 159045828 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0776] Bacterial nucleoid DNA-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.36981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCCA AGCCGCTCAC AAAGACTCAA CTCGTCGCCG CCCTCGCAGA AGGGGCTGAG
CTGGACAAGA AGACCGCGGC CGCGACGCTC GACGCGCTGA CGTCGATCGT GACCAAGGAA
GTGACCGACG GCGGTGCGGT GACGCTTCCG GGTATCGGCA AAATCTACTG CCGCGAGCGT
CCGGAGCGCA TGGTGCGGAA CCCGGCCACG GGCGAGCAGA TCAAGAAGGA CGCCGACAAG
GTGGTCAAGG TGACCATCGC CAAGGCGCTC AAGGACAGCG TGAACGGCTG A
|
|---|
| Protein sequence | MAAKPLTKTQ LVAALAEGAE LDKKTAAATL DALTSIVTKE VTDGGAVTLP GIGKIYCRER
PERMVRNPAT GEQIKKDADK VVKVTIAKAL KDSVNG
|
|---|
| |