More than 300 homologs were found in PanDaTox collection
for query gene MCA2947 on replicon NC_002977
Organism: Methylococcus capsulatus str. Bath



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_002977  MCA2947  prophage MuMc02, DNA-binding protein HU  100 
 
 
95 aa  188  2.9999999999999997e-47  Methylococcus capsulatus str. Bath  Bacteria  normal  0.437492  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  48.91 
 
 
90 aa  82  0.000000000000002  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_007947  Mfla_2724  histone-like DNA-binding protein  50.54 
 
 
90 aa  82  0.000000000000002  Methylobacillus flagellatus KT  Bacteria  normal  0.032856  normal 
 
 
-
 
NC_008463  PA14_12900  putative DNA binding protein  46.24 
 
 
93 aa  80.1  0.000000000000009  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  normal  0.30545 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  48.35 
 
 
90 aa  79.7  0.00000000000001  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_009656  PSPA7_1168  putative DNA binding protein  45.16 
 
 
93 aa  79.7  0.00000000000001  Pseudomonas aeruginosa PA7  Bacteria  normal  n/a   
 
 
-
 
NC_006368  lpp1826  hypothetical protein  48.39 
 
 
92 aa  79  0.00000000000002  Legionella pneumophila str. Paris  Bacteria  n/a    n/a   
 
 
-
 
NC_006369  lpl1822  hypothetical protein  48.39 
 
 
92 aa  79  0.00000000000002  Legionella pneumophila str. Lens  Bacteria  n/a    n/a   
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  47.25 
 
 
90 aa  78.6  0.00000000000003  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  46.15 
 
 
90 aa  76.6  0.0000000000001  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  47.25 
 
 
90 aa  76.3  0.0000000000001  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  46.15 
 
 
90 aa  76.6  0.0000000000001  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  46.15 
 
 
90 aa  76.3  0.0000000000002  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  46.15 
 
 
90 aa  76.3  0.0000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  46.07 
 
 
98 aa  74.7  0.0000000000004  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  46.07 
 
 
90 aa  74.7  0.0000000000004  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_008789  Hhal_0600  histone family protein DNA-binding protein  45.05 
 
 
90 aa  73.9  0.0000000000006  Halorhodospira halophila SL1  Bacteria  normal  0.0791658  n/a   
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  42.86 
 
 
90 aa  73.6  0.0000000000009  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  46.15 
 
 
90 aa  73.6  0.0000000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  47.25 
 
 
90 aa  73.6  0.0000000000009  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  43.01 
 
 
91 aa  73.2  0.000000000001  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  47.25 
 
 
90 aa  73.6  0.000000000001  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_009439  Pmen_2651  histone family protein DNA-binding protein  43.82 
 
 
92 aa  73.2  0.000000000001  Pseudomonas mendocina ymp  Bacteria  normal  0.532078  normal 
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  44.57 
 
 
90 aa  72  0.000000000002  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  42.86 
 
 
90 aa  72  0.000000000002  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  42.86 
 
 
90 aa  72  0.000000000002  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  42.86 
 
 
90 aa  72  0.000000000003  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  43.48 
 
 
90 aa  71.2  0.000000000004  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_007492  Pfl01_0984  histone-like DNA-binding protein  42.86 
 
 
93 aa  71.2  0.000000000005  Pseudomonas fluorescens Pf0-1  Bacteria  normal  normal 
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  40.86 
 
 
91 aa  70.9  0.000000000006  Chlorobium chlorochromatii CaD3  Bacteria  normal  n/a   
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  41.76 
 
 
90 aa  70.9  0.000000000006  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  41.76 
 
 
94 aa  70.5  0.000000000007  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  44.57 
 
 
90 aa  70.5  0.000000000007  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  41.76 
 
 
94 aa  70.5  0.000000000007  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_009380  Strop_4159  histone family protein DNA-binding protein  42.39 
 
 
91 aa  70.5  0.000000000007  Salinispora tropica CNB-440  Bacteria  normal  normal 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  43.96 
 
 
90 aa  70.5  0.000000000008  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  42.86 
 
 
90 aa  70.5  0.000000000008  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  42.86 
 
 
90 aa  70.5  0.000000000008  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  42.86 
 
 
90 aa  70.5  0.000000000008  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  41.76 
 
 
90 aa  70.1  0.000000000009  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  42.86 
 
 
91 aa  70.1  0.000000000009  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  43.01 
 
 
91 aa  69.7  0.00000000001  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  43.48 
 
 
90 aa  69.7  0.00000000001  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  43.48 
 
 
90 aa  69.7  0.00000000001  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  42.39 
 
 
90 aa  69.7  0.00000000001  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  43.48 
 
 
90 aa  69.7  0.00000000001  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  69.3  0.00000000001  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  46.15 
 
 
90 aa  70.1  0.00000000001  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_008148  Rxyl_2301  nucleoid protein Hbs  41.3 
 
 
90 aa  69.7  0.00000000001  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.265465  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  44.57 
 
 
90 aa  69.7  0.00000000001  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_012892  B21_00396  hypothetical protein  45.05 
 
 
90 aa  69.3  0.00000000001  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  41.76 
 
 
90 aa  68.9  0.00000000002  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  40.66 
 
 
90 aa  68.9  0.00000000002  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007954  Sden_0658  histone-like DNA-binding protein  42.86 
 
 
90 aa  68.9  0.00000000002  Shewanella denitrificans OS217  Bacteria  normal  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  40.66 
 
 
90 aa  68.6  0.00000000003  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  42.86 
 
 
90 aa  68.6  0.00000000003  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  68.6  0.00000000003  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  68.6  0.00000000003  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_010501  PputW619_1745  histone family protein DNA-binding protein  43.48 
 
 
90 aa  68.6  0.00000000003  Pseudomonas putida W619  Bacteria  normal  0.693876  hitchhiker  0.00044049 
 
 
-
 
NC_009656  PSPA7_3493  DNA-binding protein HU  45.05 
 
 
90 aa  68.6  0.00000000003  Pseudomonas aeruginosa PA7  Bacteria  normal  0.175993  n/a   
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  68.6  0.00000000003  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  68.6  0.00000000003  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  45.05 
 
 
90 aa  68.6  0.00000000003  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_008345  Sfri_3532  histone family protein DNA-binding protein  42.86 
 
 
90 aa  68.6  0.00000000003  Shewanella frigidimarina NCIMB 400  Bacteria  normal  n/a   
 
 
-
 
NC_008463  PA14_41210  DNA-binding protein HU  45.05 
 
 
90 aa  68.6  0.00000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  0.0758892  normal  0.416187 
 
 
-
 
NC_011146  Gbem_1275  histone family protein DNA-binding protein  40.66 
 
 
91 aa  67.8  0.00000000004  Geobacter bemidjiensis Bem  Bacteria  decreased coverage  0.0000000292942  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  44.57 
 
 
90 aa  68.2  0.00000000004  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  42.86 
 
 
91 aa  67.8  0.00000000005  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  41.76 
 
 
91 aa  67.8  0.00000000005  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_014248  Aazo_0318  histone family protein DNA-binding protein  43.96 
 
 
94 aa  67.8  0.00000000005  'Nostoc azollae' 0708  Bacteria  normal  n/a   
 
 
-
 
NC_002939  GSU3132  DNA-binding protein HU  39.78 
 
 
94 aa  67.4  0.00000000006  Geobacter sulfurreducens PCA  Bacteria  normal  0.246817  n/a   
 
 
-
 
NC_002947  PP_2303  histone family protein DNA-binding protein  43.96 
 
 
90 aa  67.4  0.00000000006  Pseudomonas putida KT2440  Bacteria  normal  0.0561689  hitchhiker  0.000233767 
 
 
-
 
NC_007413  Ava_1767  nucleoid protein Hbs  42.86 
 
 
94 aa  67.4  0.00000000006  Anabaena variabilis ATCC 29413  Bacteria  normal  normal 
 
 
-
 
NC_012560  Avin_23600  histone-like DNA-binding protein  44.57 
 
 
90 aa  67.4  0.00000000006  Azotobacter vinelandii DJ  Bacteria  normal  n/a   
 
 
-
 
NC_009512  Pput_3466  histone family protein DNA-binding protein  43.96 
 
 
90 aa  67.4  0.00000000006  Pseudomonas putida F1  Bacteria  normal  0.360259  hitchhiker  0.000212777 
 
 
-
 
NC_009664  Krad_3371  histone family protein DNA-binding protein  44.09 
 
 
92 aa  67.4  0.00000000006  Kineococcus radiotolerans SRS30216  Bacteria  normal  0.557134  normal  0.106715 
 
 
-
 
NC_012918  GM21_3008  histone family protein DNA-binding protein  40.66 
 
 
91 aa  67  0.00000000007  Geobacter sp. M21  Bacteria  n/a    normal  0.341575 
 
 
-
 
NC_013205  Aaci_0186  histone family protein DNA-binding protein  46.15 
 
 
90 aa  67  0.00000000007  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  43.3 
 
 
91 aa  67  0.00000000008  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_011071  Smal_0839  histone family protein DNA-binding protein  42.39 
 
 
90 aa  67  0.00000000009  Stenotrophomonas maltophilia R551-3  Bacteria  normal  0.0237084  normal 
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  39.78 
 
 
91 aa  66.6  0.0000000001  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_013169  Ksed_26150  nucleoid DNA-binding protein  40.86 
 
 
91 aa  66.2  0.0000000001  Kytococcus sedentarius DSM 20547  Bacteria  normal  normal 
 
 
-
 
NC_007498  Pcar_1880  nucleoid DNA-binding protein  42.11 
 
 
94 aa  66.2  0.0000000001  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  0.000000082072  n/a   
 
 
-
 
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