More than 300 homologs were found in PanDaTox collection
for query gene Rxyl_2301 on replicon NC_008148
Organism: Rubrobacter xylanophilus DSM 9941



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_008148  Rxyl_2301  nucleoid protein Hbs  100 
 
 
90 aa  181  3e-45  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  0.265465  n/a   
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  56.18 
 
 
91 aa  97.8  4e-20  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_009523  RoseRS_4008  histone family protein DNA-binding protein  47.78 
 
 
92 aa  96.7  8e-20  Roseiflexus sp. RS-1  Bacteria  hitchhiker  0.0000735771  normal 
 
 
-
 
NC_009972  Haur_4202  histone family protein DNA-binding protein  51.11 
 
 
95 aa  96.7  9e-20  Herpetosiphon aurantiacus ATCC 23779  Bacteria  normal  0.806562  n/a   
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  48.31 
 
 
90 aa  96.7  1e-19  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  53.33 
 
 
90 aa  96.3  1e-19  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  52.22 
 
 
90 aa  95.9  2e-19  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  52.22 
 
 
90 aa  95.9  2e-19  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  50.56 
 
 
91 aa  95.9  2e-19  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  52.22 
 
 
90 aa  95.9  2e-19  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_010003  Pmob_1910  histone family protein DNA-binding protein  48.89 
 
 
90 aa  95.5  2e-19  Petrotoga mobilis SJ95  Bacteria  unclonable  0.00000000311196  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  52.81 
 
 
90 aa  95.9  2e-19  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_009767  Rcas_0673  histone family protein DNA-binding protein  46.67 
 
 
92 aa  95.9  2e-19  Roseiflexus castenholzii DSM 13941  Bacteria  normal  normal  0.25409 
 
 
-
 
NC_012880  Dd703_2873  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  94.4  5e-19  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  50.56 
 
 
91 aa  94  6e-19  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_012917  PC1_1051  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  94  7e-19  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  normal  0.593082  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  49.44 
 
 
90 aa  93.6  7e-19  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_013421  Pecwa_3261  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  94  7e-19  Pectobacterium wasabiae WPP163  Bacteria  normal  n/a   
 
 
-
 
NC_013889  TK90_0576  histone family protein DNA-binding protein  51.69 
 
 
90 aa  93.6  8e-19  Thioalkalivibrio sp. K90mix  Bacteria  normal  normal  0.0418926 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  50.56 
 
 
90 aa  93.6  9e-19  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
CP001509  ECD_00392  HU, DNA-binding transcriptional regulator, beta subunit  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli BL21(DE3)  Bacteria  normal  n/a   
 
 
-
 
CP001637  EcDH1_3169  histone family protein DNA-binding protein  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli DH1  Bacteria  hitchhiker  0.000005828  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_010468  EcolC_3192  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli ATCC 8739  Bacteria  normal  0.0216859  hitchhiker  0.00242013 
 
 
-
 
NC_011205  SeD_A0493  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  0.107938  normal 
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010498  EcSMS35_0483  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000219434  normal 
 
 
-
 
NC_011083  SeHA_C0554  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  hitchhiker  0.00736621  normal 
 
 
-
 
NC_011353  ECH74115_0526  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli O157:H7 str. EC4115  Bacteria  hitchhiker  0.00026983  normal  0.698185 
 
 
-
 
NC_011831  Cagg_2800  histone family protein DNA-binding protein  45.56 
 
 
91 aa  93.2  1e-18  Chloroflexus aggregans DSM 9485  Bacteria  normal  0.0357703  normal  0.314241 
 
 
-
 
NC_011080  SNSL254_A0500  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  0.332585  normal  0.0268714 
 
 
-
 
NC_011094  SeSA_A0510  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  normal  0.0507646  normal 
 
 
-
 
NC_010658  SbBS512_E0363  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Shigella boydii CDC 3083-94  Bacteria  hitchhiker  0.00017145  n/a   
 
 
-
 
NC_011149  SeAg_B0491  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  93.2  1e-18  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  normal  0.0126716  n/a   
 
 
-
 
NC_009800  EcHS_A0517  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli HS  Bacteria  hitchhiker  0.0000000000441181  n/a   
 
 
-
 
NC_009801  EcE24377A_0476  transcriptional regulator HU subunit beta  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli E24377A  Bacteria  hitchhiker  0.000220916  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  49.44 
 
 
90 aa  92.8  1e-18  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal 
 
 
-
 
NC_012892  B21_00396  hypothetical protein  51.69 
 
 
90 aa  92.8  1e-18  Escherichia coli BL21  Bacteria  normal  n/a   
 
 
-
 
NC_002950  PG0121  DNA-binding protein HU  50.59 
 
 
88 aa  92.4  2e-18  Porphyromonas gingivalis W83  Bacteria  n/a    hitchhiker  0.00022412 
 
 
-
 
NC_012912  Dd1591_3065  transcriptional regulator HU subunit beta  50.56 
 
 
90 aa  92.4  2e-18  Dickeya zeae Ech1591  Bacteria  normal  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  48.31 
 
 
91 aa  92  2e-18  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_1674  histone-like DNA-binding protein  50.56 
 
 
90 aa  92  2e-18  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  normal  0.171237 
 
 
-
 
NC_011206  Lferr_1035  histone family protein DNA-binding protein  48.31 
 
 
90 aa  92.4  2e-18  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  decreased coverage  0.00000557803  hitchhiker  0.00000000462139 
 
 
-
 
NC_011761  AFE_0914  DNA-binding protein HU  48.31 
 
 
90 aa  92.4  2e-18  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  normal  0.196839  n/a   
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  49.44 
 
 
91 aa  92  3e-18  Parvibaculum lavamentivorans DS-1  Bacteria  normal  normal 
 
 
-
 
NC_009012  Cthe_2657  nucleoid protein Hbs  49.44 
 
 
91 aa  91.7  3e-18  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_011901  Tgr7_0942  histone family protein DNA-binding protein  50.56 
 
 
90 aa  91.7  3e-18  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  52.81 
 
 
93 aa  91.7  3e-18  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  52.81 
 
 
91 aa  90.9  5e-18  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009832  Spro_1098  histone family protein DNA-binding protein  50.56 
 
 
101 aa  90.5  6e-18  Serratia proteamaculans 568  Bacteria  hitchhiker  0.00970005  hitchhiker  0.00000236625 
 
 
-
 
NC_008709  Ping_3218  DNA-binding protein HU alpha subunit  51.69 
 
 
91 aa  90.5  7e-18  Psychromonas ingrahamii 37  Bacteria  normal  normal  0.585838 
 
 
-
 
NC_009436  Ent638_0907  transcriptional regulator HU subunit beta  49.44 
 
 
90 aa  90.5  7e-18  Enterobacter sp. 638  Bacteria  normal  0.0908162  normal 
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  47.78 
 
 
90 aa  90.5  8e-18  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  47.78 
 
 
90 aa  90.5  8e-18  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_011662  Tmz1t_2014  histone family protein DNA-binding protein  48.31 
 
 
90 aa  89.7  1e-17  Thauera sp. MZ1T  Bacteria  decreased coverage  0.000105311  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  47.19 
 
 
90 aa  89.4  1e-17  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  48.31 
 
 
90 aa  89.4  1e-17  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_011312  VSAL_I0822  DNA-binding protein HU-beta  48.31 
 
 
98 aa  89.4  1e-17  Aliivibrio salmonicida LFI1238  Bacteria  normal  0.172487  n/a   
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  50 
 
 
90 aa  89.4  1e-17  Desulfohalobium retbaense DSM 5692  Bacteria  normal  normal  0.0802524 
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  49.44 
 
 
90 aa  89  2e-17  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  49.44 
 
 
91 aa  89  2e-17  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_013205  Aaci_0186  histone family protein DNA-binding protein  51.11 
 
 
90 aa  88.6  2e-17  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  52.22 
 
 
92 aa  89  2e-17  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_008527  LACR_0525  nucleoid protein Hbs  49.44 
 
 
91 aa  88.6  2e-17  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  48.31 
 
 
90 aa  89  2e-17  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_008228  Patl_3133  histone-like DNA-binding protein  47.19 
 
 
90 aa  88.6  3e-17  Pseudoalteromonas atlantica T6c  Bacteria  unclonable  0.0000000045924  n/a   
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  49.44 
 
 
91 aa  88.6  3e-17  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.8  4e-17  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_007614  Nmul_A2337  histone-like DNA-binding protein  48.31 
 
 
90 aa  87.8  4e-17  Nitrosospira multiformis ATCC 25196  Bacteria  unclonable  0.0000000498066  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  47.19 
 
 
90 aa  87.8  4e-17  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_008254  Meso_1172  histone-like DNA-binding protein  49.44 
 
 
90 aa  87.8  4e-17  Chelativorans sp. BNC1  Bacteria  normal  0.856335  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  5e-17  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  46.67 
 
 
90 aa  87.4  5e-17  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  46.67 
 
 
90 aa  87.4  5e-17  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  48.35 
 
 
91 aa  87.4  6e-17  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  n/a   
 
 
-
 
NC_013456  VEA_004041  DNA-binding protein HU-beta  47.19 
 
 
90 aa  87.4  6e-17  Vibrio sp. Ex25  Bacteria  unclonable  0.000000015142  n/a   
 
 
-
 
NC_008346  Swol_0083  DNA-binding protein HU (DNA-binding protein II)  46.07 
 
 
90 aa  87.4  6e-17  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_009439  Pmen_2053  nucleoid protein HU beta subunit  49.44 
 
 
90 aa  87.4  6e-17  Pseudomonas mendocina ymp  Bacteria  hitchhiker  0.000457213  normal  0.0670315 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  46.07 
 
 
90 aa  87  7e-17  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  46.67 
 
 
91 aa  87  7e-17  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  47.19 
 
 
90 aa  87.4  7e-17  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_007912  Sde_1611  nucleoid protein HU beta subunit  48.31 
 
 
90 aa  87  8e-17  Saccharophagus degradans 2-40  Bacteria  hitchhiker  0.000132089  normal 
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  48.31 
 
 
91 aa  87  8e-17  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
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