More than 300 homologs were found in PanDaTox collection
for query gene Cthe_2657 on replicon NC_009012
Organism: Clostridium thermocellum ATCC 27405



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_009012  Cthe_2657  nucleoid protein Hbs  100 
 
 
91 aa  179  2e-44  Clostridium thermocellum ATCC 27405  Bacteria  hitchhiker  0.000194133  n/a   
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  80 
 
 
91 aa  150  5e-36  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_012034  Athe_0648  histone family protein DNA-binding protein  76.92 
 
 
91 aa  143  1e-33  Anaerocellum thermophilum DSM 6725  Bacteria  unclonable  0.0000000000417185  n/a   
 
 
-
 
NC_012034  Athe_2511  histone family protein DNA-binding protein  74.16 
 
 
92 aa  139  1.9999999999999998e-32  Anaerocellum thermophilum DSM 6725  Bacteria  hitchhiker  0.0000000006954  n/a   
 
 
-
 
NC_011898  Ccel_3085  histone family protein DNA-binding protein  71.43 
 
 
91 aa  136  7.999999999999999e-32  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.000115471  n/a   
 
 
-
 
NC_011898  Ccel_2424  histone family protein DNA-binding protein  72.22 
 
 
91 aa  135  3.0000000000000003e-31  Clostridium cellulolyticum H10  Bacteria  hitchhiker  0.00000000394497  n/a   
 
 
-
 
NC_010424  Daud_0075  histone family protein DNA-binding protein  70.33 
 
 
91 aa  130  5e-30  Candidatus Desulforudis audaxviator MP104C  Bacteria  normal  n/a   
 
 
-
 
NC_011830  Dhaf_0135  histone family protein DNA-binding protein  67.03 
 
 
91 aa  129  2.0000000000000002e-29  Desulfitobacterium hafniense DCB-2  Bacteria  hitchhiker  0.00267128  n/a   
 
 
-
 
NC_008261  CPF_2802  DNA-binding protein HU  72.22 
 
 
91 aa  126  8.000000000000001e-29  Clostridium perfringens ATCC 13124  Bacteria  hitchhiker  0.000000141643  n/a   
 
 
-
 
NC_008262  CPR_2488  DNA-binding protein HU  72.22 
 
 
91 aa  126  8.000000000000001e-29  Clostridium perfringens SM101  Bacteria  unclonable  0.0000000000405619  n/a   
 
 
-
 
NC_013411  GYMC61_0465  histone family protein DNA-binding protein  68.54 
 
 
90 aa  123  7e-28  Geobacillus sp. Y412MC61  Bacteria  n/a    n/a   
 
 
-
 
NC_007644  Moth_0085  nucleoid protein Hbs  63.74 
 
 
91 aa  123  7e-28  Moorella thermoacetica ATCC 39073  Bacteria  normal  0.0539634  normal 
 
 
-
 
NC_012793  GWCH70_2154  histone family protein DNA-binding protein  68.54 
 
 
90 aa  123  7e-28  Geobacillus sp. WCH70  Bacteria  hitchhiker  0.000000552537  n/a   
 
 
-
 
NC_013385  Adeg_2069  histone family protein DNA-binding protein  62.22 
 
 
95 aa  122  2e-27  Ammonifex degensii KC4  Bacteria  normal  n/a   
 
 
-
 
NC_009253  Dred_0115  histone family protein DNA-binding protein  66.29 
 
 
95 aa  121  3e-27  Desulfotomaculum reducens MI-1  Bacteria  normal  0.552761  n/a   
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  63.74 
 
 
91 aa  121  4e-27  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_011773  BCAH820_1604  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.000159132 
 
 
-
 
NC_003909  BCE_1637  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cereus ATCC 10987  Bacteria  decreased coverage  0.00420342  n/a   
 
 
-
 
NC_005945  BAS1420  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus anthracis str. Sterne  Bacteria  normal  0.190218  n/a   
 
 
-
 
NC_005957  BT9727_1392  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.011833  n/a   
 
 
-
 
NC_006274  BCZK1392  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cereus E33L  Bacteria  decreased coverage  0.00000512711  n/a   
 
 
-
 
NC_009674  Bcer98_1233  histone family protein DNA-binding protein  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.0133564  n/a   
 
 
-
 
NC_007530  GBAA_1531  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.259543  n/a   
 
 
-
 
NC_011725  BCB4264_A1566  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cereus B4264  Bacteria  normal  0.236067  n/a   
 
 
-
 
NC_011658  BCAH187_A1673  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cereus AH187  Bacteria  hitchhiker  0.0000325838  n/a   
 
 
-
 
NC_010184  BcerKBAB4_1434  histone family protein DNA-binding protein  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.087278  n/a   
 
 
-
 
NC_011772  BCG9842_B3779  DNA-binding protein HU  66.29 
 
 
90 aa  119  9.999999999999999e-27  Bacillus cereus G9842  Bacteria  decreased coverage  0.000354145  normal  0.961445 
 
 
-
 
NC_013171  Apre_0964  histone family protein DNA-binding protein  63.04 
 
 
92 aa  119  9.999999999999999e-27  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.00000000994236  n/a   
 
 
-
 
NC_002976  SERP1041  DNA-binding protein HU  61.8 
 
 
90 aa  117  6e-26  Staphylococcus epidermidis RP62A  Bacteria  normal  0.436255  n/a   
 
 
-
 
NC_009632  SaurJH1_1560  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  6e-26  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  0.768925  n/a   
 
 
-
 
NC_009487  SaurJH9_1530  histone family protein DNA-binding protein  61.8 
 
 
90 aa  117  6e-26  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.277737  n/a   
 
 
-
 
NC_008346  Swol_0083  DNA-binding protein HU (DNA-binding protein II)  62.07 
 
 
90 aa  115  3e-25  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_0219  histone family protein DNA-binding protein  58.43 
 
 
96 aa  112  2.0000000000000002e-24  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  0.132966  normal 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  57.78 
 
 
90 aa  112  2.0000000000000002e-24  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_009513  Lreu_0765  nucleoid protein Hbs  59.09 
 
 
91 aa  111  3e-24  Lactobacillus reuteri DSM 20016  Bacteria  hitchhiker  0.00000296782  n/a   
 
 
-
 
NC_009654  Mmwyl1_1726  histone family protein DNA-binding protein  60 
 
 
90 aa  111  3e-24  Marinomonas sp. MWYL1  Bacteria  unclonable  0.00000000326644  hitchhiker  0.00672024 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_011663  Sbal223_2747  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella baltica OS223  Bacteria  decreased coverage  0.00000000276504  normal  0.581764 
 
 
-
 
NC_009052  Sbal_1607  histone family protein DNA-binding protein  62.22 
 
 
90 aa  111  3e-24  Shewanella baltica OS155  Bacteria  hitchhiker  0.0000000022491  n/a   
 
 
-
 
NC_007204  Psyc_1474  putative DNA-binding protein HU-beta  62.22 
 
 
90 aa  110  5e-24  Psychrobacter arcticus 273-4  Bacteria  hitchhiker  0.0000000000000997119  hitchhiker  0.0000985943 
 
 
-
 
NC_011661  Dtur_1514  histone family protein DNA-binding protein  56.04 
 
 
91 aa  110  5e-24  Dictyoglomus turgidum DSM 6724  Bacteria  decreased coverage  0.0000108882  n/a   
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  61.11 
 
 
90 aa  110  5e-24  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  60 
 
 
90 aa  110  6e-24  Shewanella pealeana ATCC 700345  Bacteria  normal  n/a   
 
 
-
 
NC_007969  Pcryo_1653  histone-like DNA-binding protein  62.22 
 
 
90 aa  110  6e-24  Psychrobacter cryohalolentis K5  Bacteria  unclonable  0.00000047794  unclonable  0.0000440637 
 
 
 
NC_008527  LACR_0525  nucleoid protein Hbs  63.64 
 
 
91 aa  110  6e-24  Lactococcus lactis subsp. cremoris SK11  Bacteria  decreased coverage  0.00046461  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  60 
 
 
90 aa  110  7.000000000000001e-24  Shewanella woodyi ATCC 51908  Bacteria  normal  normal 
 
 
-
 
NC_010718  Nther_0070  nucleoid protein Hbs  60.67 
 
 
92 aa  110  7.000000000000001e-24  Natranaerobius thermophilus JW/NM-WN-LF  Bacteria  normal  0.0240129  normal 
 
 
-
 
NC_008346  Swol_0648  non-specific DNA-binding protein HBsu  58.82 
 
 
110 aa  110  7.000000000000001e-24  Syntrophomonas wolfei subsp. wolfei str. Goettingen  Bacteria  normal  0.271458  n/a   
 
 
-
 
NC_013205  Aaci_0186  histone family protein DNA-binding protein  61.36 
 
 
90 aa  109  1.0000000000000001e-23  Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446  Bacteria  normal  n/a   
 
 
-
 
NC_010180  BcerKBAB4_5693  histone family protein DNA-binding protein  58.43 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.0471576  normal  0.0346696 
 
 
-
 
NC_009524  PsycPRwf_1626  histone family protein DNA-binding protein  58.89 
 
 
90 aa  108  2.0000000000000002e-23  Psychrobacter sp. PRwf-1  Bacteria  unclonable  0.00000000000133039  hitchhiker  0.00000000638901 
 
 
-
 
NC_009674  Bcer98_2403  histone family protein DNA-binding protein  58.43 
 
 
90 aa  108  2.0000000000000002e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  unclonable  0.00000000237544  n/a   
 
 
-
 
NC_008532  STER_1175  histone-like DNA-binding protein  59.09 
 
 
91 aa  108  2.0000000000000002e-23  Streptococcus thermophilus LMD-9  Bacteria  hitchhiker  0.000000211181  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  60 
 
 
90 aa  108  2.0000000000000002e-23  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal 
 
 
-
 
NC_010506  Swoo_3110  histone family protein DNA-binding protein  58.89 
 
 
90 aa  108  3e-23  Shewanella woodyi ATCC 51908  Bacteria  unclonable  0.0000000105676  hitchhiker  0.00000299463 
 
 
-
 
NC_009674  Bcer98_1763  histone family protein DNA-binding protein  58.43 
 
 
90 aa  108  4.0000000000000004e-23  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  0.203917  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  58.89 
 
 
90 aa  107  4.0000000000000004e-23  Shewanella sediminis HAW-EB3  Bacteria  normal  normal 
 
 
-
 
NC_008530  LGAS_0894  nucleoid DNA-binding protein  57.95 
 
 
91 aa  107  4.0000000000000004e-23  Lactobacillus gasseri ATCC 33323  Bacteria  hitchhiker  8.08972e-16  hitchhiker  0.000000000000265027 
 
 
-
 
NC_011725  BCB4264_A2342  DNA-binding protein HU  57.3 
 
 
90 aa  107  5e-23  Bacillus cereus B4264  Bacteria  normal  0.868034  n/a   
 
 
-
 
NC_011772  BCG9842_B2983  DNA-binding protein HU  57.3 
 
 
90 aa  107  5e-23  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_2407  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus cereus ATCC 10987  Bacteria  normal  0.020348  n/a   
 
 
-
 
NC_005945  BAS2213  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus anthracis str. Sterne  Bacteria  normal  0.519209  n/a   
 
 
-
 
NC_005957  BT9727_2152  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  normal  0.0274093  n/a   
 
 
-
 
NC_006274  BCZK2136  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus cereus E33L  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_2377  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_2395  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_011658  BCAH187_A2477  DNA-binding protein HU  57.3 
 
 
90 aa  107  6e-23  Bacillus cereus AH187  Bacteria  normal  n/a   
 
 
-
 
NC_008345  Sfri_2593  histone family protein DNA-binding protein  58.89 
 
 
91 aa  107  6e-23  Shewanella frigidimarina NCIMB 400  Bacteria  hitchhiker  0.0000000173721  n/a   
 
 
-
 
NC_011775  BCG9842_0074  DNA-binding protein HU  58.14 
 
 
90 aa  107  7.000000000000001e-23  Bacillus cereus G9842  Bacteria  unclonable  0.00000000000481156  n/a   
 
 
-
 
NC_007954  Sden_2492  histone-like DNA-binding protein  58.89 
 
 
90 aa  107  7.000000000000001e-23  Shewanella denitrificans OS217  Bacteria  hitchhiker  0.00401844  n/a   
 
 
-
 
NC_010184  BcerKBAB4_2184  histone family protein DNA-binding protein  56.18 
 
 
90 aa  107  8.000000000000001e-23  Bacillus weihenstephanensis KBAB4  Bacteria  normal  0.170143  n/a   
 
 
-
 
NC_010184  BcerKBAB4_3494  histone family protein DNA-binding protein  57.3 
 
 
90 aa  107  8.000000000000001e-23  Bacillus weihenstephanensis KBAB4  Bacteria  decreased coverage  0.00000668206  n/a   
 
 
-
 
NC_009092  Shew_2505  histone family protein DNA-binding protein  57.78 
 
 
90 aa  107  8.000000000000001e-23  Shewanella loihica PV-4  Bacteria  hitchhiker  0.0000000791734  normal  0.581146 
 
 
-
 
NC_008709  Ping_1468  DNA-binding protein HU beta subunit  56.67 
 
 
91 aa  107  8.000000000000001e-23  Psychromonas ingrahamii 37  Bacteria  normal  0.961834  normal  0.643607 
 
 
-
 
NC_009708  YpsIP31758_3089  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  106  9.000000000000001e-23  Yersinia pseudotuberculosis IP 31758  Bacteria  unclonable  1.42002e-19  n/a   
 
 
-
 
NC_010465  YPK_3231  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  106  9.000000000000001e-23  Yersinia pseudotuberculosis YPIII  Bacteria  normal  n/a   
 
 
-
 
NC_009901  Spea_2678  histone family protein DNA-binding protein  58.89 
 
 
90 aa  106  9.000000000000001e-23  Shewanella pealeana ATCC 700345  Bacteria  unclonable  0.0000000000589622  n/a   
 
 
-
 
NC_010159  YpAngola_A3051  transcriptional regulator HU subunit beta  56.67 
 
 
90 aa  106  9.000000000000001e-23  Yersinia pestis Angola  Bacteria  hitchhiker  0.00488463  normal 
 
 
-
 
NC_008531  LEUM_1290  nucleoid protein Hbs  59.09 
 
 
91 aa  106  9.000000000000001e-23  Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293  Bacteria  hitchhiker  0.00000854913  n/a   
 
 
-
 
NC_007484  Noc_1772  histone-like DNA-binding protein  55.56 
 
 
90 aa  106  1e-22  Nitrosococcus oceani ATCC 19707  Bacteria  decreased coverage  0.000757515  n/a   
 
 
-
 
NC_007520  Tcr_1180  histone-like DNA-binding protein  54.44 
 
 
90 aa  106  1e-22  Thiomicrospira crunogena XCL-2  Bacteria  unclonable  2.95654e-16  n/a   
 
 
-
 
NC_009831  Ssed_1544  histone family protein DNA-binding protein  57.78 
 
 
90 aa  106  1e-22  Shewanella sediminis HAW-EB3  Bacteria  unclonable  0.000000007734  hitchhiker  0.000745392 
 
 
-
 
NC_013422  Hneap_0390  histone family protein DNA-binding protein  57.78 
 
 
90 aa  106  1e-22  Halothiobacillus neapolitanus c2  Bacteria  decreased coverage  0.0000165854  n/a   
 
 
-
 
NC_008528  OEOE_1010  nucleoid protein Hbs  56.82 
 
 
91 aa  105  2e-22  Oenococcus oeni PSU-1  Bacteria  normal  0.301873  n/a   
 
 
-
 
NC_008700  Sama_3158  histone-like DNA-binding protein  57.78 
 
 
90 aa  105  2e-22  Shewanella amazonensis SB2B  Bacteria  normal  normal 
 
 
-
 
NC_003909  BCE_3756  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus cereus ATCC 10987  Bacteria  unclonable  0.0000000000231467  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  57.78 
 
 
90 aa  104  3e-22  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal 
 
 
-
 
NC_005945  BAS3574  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus anthracis str. Sterne  Bacteria  decreased coverage  0.0000000000204463  n/a   
 
 
-
 
NC_005957  BT9727_3473  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus thuringiensis serovar konkukian str. 97-27  Bacteria  decreased coverage  1.59147e-20  n/a   
 
 
-
 
NC_006274  BCZK3486  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus cereus E33L  Bacteria  unclonable  0.000000000000148823  n/a   
 
 
-
 
NC_011658  BCAH187_A3778  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus cereus AH187  Bacteria  unclonable  0.000000000704337  n/a   
 
 
-
 
NC_007530  GBAA_3858  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  unclonable  0.0000000000000587043  n/a   
 
 
-
 
NC_011773  BCAH820_3740  DNA-binding protein HU  56.18 
 
 
90 aa  105  3e-22  Bacillus cereus AH820  Bacteria  n/a    hitchhiker  0.00000000000000145695 
 
 
-
 
NC_008609  Ppro_1181  histone family protein DNA-binding protein  58.89 
 
 
92 aa  105  3e-22  Pelobacter propionicus DSM 2379  Bacteria  normal  0.42545  n/a   
 
 
-
 
NC_008740  Maqu_1837  histone family protein DNA-binding protein  56.18 
 
 
90 aa  104  3e-22  Marinobacter aquaeolei VT8  Bacteria  hitchhiker  0.00431989  n/a   
 
 
-
 
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