More than 300 homologs were found in PanDaTox collection
for query gene Dvul_0200 on replicon NC_008751
Organism: Desulfovibrio vulgaris DP4



Page 1 of 3    << first  < prev  1  2  3    next >  last >>   


Replicon accession
Locus tag
Product
% identity
Alignment on query gene
Alignment on homolog gene
Length
Bit score

E-value
Organism name
Kingdom
Plasmid clonability
Plasmid unclonability p-value
Fosmid clonability
Fosmid unclonability p-value
Coverage Plot
PanDaTox homologs
Experimental validation
NC_008751  Dvul_0200  histone family protein DNA-binding protein  100 
 
 		 95 aa  191  3e-48  Desulfovibrio vulgaris DP4  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011769  DvMF_2029  histone family protein DNA-binding protein  82.98 
 
 		 95 aa  164  4e-40  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_007519  Dde_0125  histone-like DNA-binding protein  75.53 
 
 		 95 aa  154  3e-37  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_010501  PputW619_4242  histone family protein DNA-binding protein  46.24 
 
 		 93 aa  82.8  0.000000000000001  Pseudomonas putida W619  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007492  Pfl01_0984  histone-like DNA-binding protein  45.16 
 
 		 93 aa  82  0.000000000000003  Pseudomonas fluorescens Pf0-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009512  Pput_1013  histone family protein DNA-binding protein  46.24 
 
 		 93 aa  80.9  0.000000000000006  Pseudomonas putida F1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_002947  PP_0975  histone family protein DNA-binding protein  46.24 
 
 		 93 aa  80.9  0.000000000000006  Pseudomonas putida KT2440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010322  PputGB1_0981  histone family protein DNA-binding protein  46.24 
 
 		 93 aa  80.9  0.000000000000006  Pseudomonas putida GB-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008463  PA14_12900  putative DNA binding protein  44.68 
 
 		 93 aa  78.2  0.00000000000003  Pseudomonas aeruginosa UCBPP-PA14  Bacteria  normal  1  normal  0.30545 
 
 
-
 
NC_011059  Paes_0293  histone family protein DNA-binding protein  44.68 
 
 		 94 aa  77.4  0.00000000000006  Prosthecochloris aestuarii DSM 271  Bacteria  normal  0.416752  normal  0.0238993 
 
 
-
 
NC_007947  Mfla_2724  histone-like DNA-binding protein  45.74 
 
 		 90 aa  77.4  0.00000000000006  Methylobacillus flagellatus KT  Bacteria  normal  0.032856  normal  1 
 
 
-
 
NC_009656  PSPA7_1168  putative DNA binding protein  44.68 
 
 		 93 aa  77.4  0.00000000000007  Pseudomonas aeruginosa PA7  Bacteria  normal  1  n/a   
 
 
-
 
NC_004578  PSPTO_1266  DNA-binding protein HU family  44.09 
 
 		 93 aa  77  0.00000000000008  Pseudomonas syringae pv. tomato str. DC3000  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_2673  histone family protein DNA-binding protein  45.74 
 
 		 91 aa  77  0.00000000000008  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  0.156087  n/a   
 
 
-
 
NC_011769  DvMF_2799  histone family protein DNA-binding protein  45.16 
 
 		 91 aa  75.9  0.0000000000002  Desulfovibrio vulgaris str. 'Miyazaki F'  Bacteria  n/a    normal  1 
 
 
-
 
NC_010001  Cphy_0133  histone family protein DNA-binding protein  47.31 
 
 		 91 aa  75.5  0.0000000000003  Clostridium phytofermentans ISDg  Bacteria  hitchhiker  0.0000000116647  n/a   
 
 
-
 
NC_008576  Mmc1_2903  histone family protein DNA-binding protein  58.33 
 
 		 91 aa  75.1  0.0000000000003  Magnetococcus sp. MC-1  Bacteria  decreased coverage  0.00933352  normal  0.626047 
 
 
-
 
NC_007512  Plut_1957  histone-like DNA-binding protein  50.67 
 
 		 91 aa  75.1  0.0000000000003  Chlorobium luteolum DSM 273  Bacteria  hitchhiker  0.000024611  normal  0.388646 
 
 
-
 
NC_012791  Vapar_4266  histone family protein DNA-binding protein  43.01 
 
 		 93 aa  75.1  0.0000000000003  Variovorax paradoxus S110  Bacteria  normal  0.598481  n/a   
 
 
-
 
NC_008576  Mmc1_1251  histone family protein DNA-binding protein  58.33 
 
 		 91 aa  75.1  0.0000000000003  Magnetococcus sp. MC-1  Bacteria  normal  0.0902596  normal  0.20081 
 
 
-
 
NC_008639  Cpha266_0238  histone family protein DNA-binding protein  49.33 
 
 		 91 aa  74.7  0.0000000000004  Chlorobium phaeobacteroides DSM 266  Bacteria  normal  1  n/a   
 
 
-
 
NC_009439  Pmen_2651  histone family protein DNA-binding protein  44.09 
 
 		 92 aa  74.3  0.0000000000005  Pseudomonas mendocina ymp  Bacteria  normal  0.532078  normal  1 
 
 
-
 
NC_010320  Teth514_0687  histone family protein DNA-binding protein  45.83 
 
 		 91 aa  72.8  0.000000000001  Thermoanaerobacter sp. X514  Bacteria  normal  0.105584  n/a   
 
 
-
 
NC_008576  Mmc1_2054  histone family protein DNA-binding protein  49.33 
 
 		 91 aa  72.8  0.000000000001  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00333504  normal  0.0104655 
 
 
-
 
NC_008576  Mmc1_2824  nucleoid protein Hbs  49.33 
 
 		 91 aa  72.8  0.000000000001  Magnetococcus sp. MC-1  Bacteria  normal  0.669113  normal  1 
 
 
-
 
NC_013093  Amir_0860  histone family protein DNA-binding protein  47.31 
 
 		 90 aa  72.4  0.000000000002  Actinosynnema mirum DSM 43827  Bacteria  normal  0.0124999  n/a   
 
 
-
 
NC_009901  Spea_3731  histone family protein DNA-binding protein  41.94 
 
 		 90 aa  72  0.000000000003  Shewanella pealeana ATCC 700345  Bacteria  normal  1  n/a   
 
 
-
 
NC_007005  Psyr_1084  histone-like DNA-binding protein  41.94 
 
 		 93 aa  71.6  0.000000000003  Pseudomonas syringae pv. syringae B728a  Bacteria  normal  1  normal  0.66671 
 
 
-
 
NC_010831  Cphamn1_0324  histone family protein DNA-binding protein  49.32 
 
 		 90 aa  72  0.000000000003  Chlorobium phaeobacteroides BS1  Bacteria  normal  0.064189  normal  0.0110025 
 
 
-
 
NC_011883  Ddes_0087  histone family protein DNA-binding protein  45.26 
 
 		 91 aa  71.6  0.000000000003  Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774  Bacteria  normal  1  n/a   
 
 
-
 
NC_007514  Cag_0362  histone-like DNA-binding protein  50.67 
 
 		 91 aa  71.6  0.000000000004  Chlorobium chlorochromatii CaD3  Bacteria  normal  1  n/a   
 
 
-
 
NC_009092  Shew_0430  histone family protein DNA-binding protein  41.94 
 
 		 90 aa  71.6  0.000000000004  Shewanella loihica PV-4  Bacteria  normal  0.719598  normal  1 
 
 
-
 
NC_009667  Oant_2203  histone family protein DNA-binding protein  43.75 
 
 		 91 aa  70.9  0.000000000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.0471577  n/a   
 
 
-
 
NC_007963  Csal_2043  histone-like DNA-binding protein  44.21 
 
 		 90 aa  70.5  0.000000000007  Chromohalobacter salexigens DSM 3043  Bacteria  normal  1  n/a   
 
 
-
 
NC_008751  Dvul_2207  histone family protein DNA-binding protein  43.01 
 
 		 91 aa  70.5  0.000000000007  Desulfovibrio vulgaris DP4  Bacteria  normal  0.976216  normal  0.483194 
 
 
-
 
NC_003295  RSc2521  DNA-binding protein HU-beta  42.55 
 
 		 94 aa  70.5  0.000000000008  Ralstonia solanacearum GMI1000  Bacteria  normal  0.0944475  normal  0.0105947 
 
 
-
 
NC_004310  BR1105  DNA-binding protein HU  43.75 
 
 		 91 aa  70.5  0.000000000008  Brucella suis 1330  Bacteria  normal  0.965912  n/a   
 
 
-
 
NC_010682  Rpic_2793  histone family protein DNA-binding protein  42.55 
 
 		 94 aa  70.5  0.000000000008  Ralstonia pickettii 12J  Bacteria  normal  1  normal  1 
 
 
-
 
NC_009719  Plav_3229  histone family protein DNA-binding protein  48.65 
 
 		 91 aa  70.5  0.000000000008  Parvibaculum lavamentivorans DS-1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_012856  Rpic12D_2386  histone family protein DNA-binding protein  42.55 
 
 		 94 aa  70.5  0.000000000008  Ralstonia pickettii 12D  Bacteria  normal  0.405821  normal  1 
 
 
-
 
NC_010622  Bphy_3067  histone family protein DNA-binding protein  45.45 
 
 		 92 aa  70.5  0.000000000008  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.0353619 
 
 
-
 
NC_009074  BURPS668_0004  DNA-binding protein HU-alpha  44.32 
 
 		 92 aa  70.1  0.000000000009  Burkholderia pseudomallei 668  Bacteria  normal  1  n/a   
 
 
-
 
NC_009505  BOV_1064  DNA-binding protein HU  43.75 
 
 		 91 aa  70.1  0.000000000009  Brucella ovis ATCC 25840  Bacteria  normal  0.203306  n/a   
 
 
-
 
NC_009511  Swit_2320  histone family protein DNA-binding protein  50 
 
 		 91 aa  70.1  0.000000000009  Sphingomonas wittichii RW1  Bacteria  normal  1  normal  0.0313993 
 
 
-
 
NC_006348  BMA2913  DNA-binding protein HU, form B  44.32 
 
 		 92 aa  70.1  0.000000000009  Burkholderia mallei ATCC 23344  Bacteria  normal  0.5361  n/a   
 
 
-
 
NC_009080  BMA10247_2972  DNA-binding protein HU-alpha  44.32 
 
 		 92 aa  70.1  0.000000000009  Burkholderia mallei NCTC 10247  Bacteria  normal  1  n/a   
 
 
-
 
NC_013173  Dbac_2696  histone family protein DNA-binding protein  38.75 
 
 		 109 aa  70.1  0.000000000009  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  1  n/a   
 
 
-
 
NC_008836  BMA10229_A1629  DNA-binding protein HU, form B  44.32 
 
 		 92 aa  70.1  0.000000000009  Burkholderia mallei NCTC 10229  Bacteria  normal  1  n/a   
 
 
-
 
NC_009076  BURPS1106A_0004  DNA-binding protein HU-alpha  44.32 
 
 		 92 aa  70.1  0.000000000009  Burkholderia pseudomallei 1106a  Bacteria  normal  1  n/a   
 
 
-
 
NC_008785  BMASAVP1_A3397  DNA-binding protein HU, form B  44.32 
 
 		 92 aa  70.1  0.000000000009  Burkholderia mallei SAVP1  Bacteria  normal  0.218557  n/a   
 
 
-
 
NC_008576  Mmc1_1118  HU family DNA-binding protein  50 
 
 		 91 aa  70.1  0.000000000009  Magnetococcus sp. MC-1  Bacteria  hitchhiker  0.00000128568  normal  1 
 
 
-
 
NC_010508  Bcenmc03_0084  histone family protein DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia cenocepacia MC0-3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010681  Bphyt_3933  histone family protein DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  1  normal  1 
 
 
-
 
NC_010730  SYO3AOP1_1546  histone family protein DNA-binding protein  40 
 
 		 92 aa  69.7  0.00000000001  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  4.0402e-16  n/a   
 
 
-
 
NC_007510  Bcep18194_A3247  histone-like DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia sp. 383  Bacteria  normal  1  normal  0.704477 
 
 
-
 
NC_010551  BamMC406_0065  histone family protein DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia ambifaria MC40-6  Bacteria  normal  1  normal  1 
 
 
-
 
NC_007651  BTH_I0004  DNA-binding protein HU-alpha  44.32 
 
 		 126 aa  70.1  0.00000000001  Burkholderia thailandensis E264  Bacteria  normal  1  n/a   
 
 
-
 
NC_007951  Bxe_A4504  DNA-binding protein HU-alpha  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  1  normal  0.806931 
 
 
-
 
NC_008060  Bcen_0005  histone-like DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.129264  n/a   
 
 
-
 
NC_008340  Mlg_2285  histone family protein DNA-binding protein  41.94 
 
 		 90 aa  69.7  0.00000000001  Alkalilimnicola ehrlichii MLHE-1  Bacteria  normal  0.0556838  normal  1 
 
 
-
 
NC_008390  Bamb_0055  histone family protein DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia ambifaria AMMD  Bacteria  normal  1  n/a   
 
 
-
 
NC_010084  Bmul_0066  histone family protein DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia multivorans ATCC 17616  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008542  Bcen2424_0065  histone family protein DNA-binding protein  44.32 
 
 		 92 aa  69.7  0.00000000001  Burkholderia cenocepacia HI2424  Bacteria  normal  1  n/a   
 
 
-
 
NC_011060  Ppha_1317  histone family protein DNA-binding protein  47.83 
 
 		 91 aa  68.9  0.00000000002  Pelodictyon phaeoclathratiforme BU-1  Bacteria  normal  1  n/a   
 
 
-
 
NC_002977  MCA2947  prophage MuMc02, DNA-binding protein HU  44 
 
 		 95 aa  69.3  0.00000000002  Methylococcus capsulatus str. Bath  Bacteria  normal  0.437492  n/a   
 
 
-
 
NC_007519  Dde_2752  histone-like DNA-binding protein  41.94 
 
 		 91 aa  69.3  0.00000000002  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  1  n/a   
 
 
-
 
NC_008609  Ppro_1912  histone family protein DNA-binding protein  48.86 
 
 		 88 aa  69.3  0.00000000002  Pelobacter propionicus DSM 2379  Bacteria  normal  1  n/a   
 
 
-
 
NC_007947  Mfla_0016  nucleoid protein HU beta subunit  51.35 
 
 		 90 aa  68.9  0.00000000002  Methylobacillus flagellatus KT  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013522  Taci_0790  histone family protein DNA-binding protein  43.62 
 
 		 93 aa  69.3  0.00000000002  Thermanaerovibrio acidaminovorans DSM 6589  Bacteria  hitchhiker  0.000040725  n/a   
 
 
-
 
NC_010803  Clim_0201  histone family protein DNA-binding protein  47.95 
 
 		 91 aa  68.9  0.00000000002  Chlorobium limicola DSM 245  Bacteria  hitchhiker  0.000000429798  n/a   
 
 
-
 
NC_009380  Strop_4159  histone family protein DNA-binding protein  45.95 
 
 		 91 aa  68.6  0.00000000002  Salinispora tropica CNB-440  Bacteria  normal  1  normal  1 
 
 
-
 
NC_011662  Tmz1t_0440  histone family protein DNA-binding protein  44.09 
 
 		 91 aa  69.3  0.00000000002  Thauera sp. MZ1T  Bacteria  normal  1  n/a   
 
 
-
 
NC_007498  Pcar_1686  DNA-binding protein HU-beta, NS1(HU-1)  40.86 
 
 		 90 aa  68.2  0.00000000004  Pelobacter carbinolicus DSM 2380  Bacteria  hitchhiker  6.460310000000001e-19  n/a   
 
 
-
 
NC_008700  Sama_1227  HU family DNA-binding protein  45.95 
 
 		 90 aa  67.8  0.00000000005  Shewanella amazonensis SB2B  Bacteria  hitchhiker  0.0000165625  normal  1 
 
 
-
 
NC_010531  Pnec_1743  histone family protein DNA-binding protein  41.94 
 
 		 106 aa  67.8  0.00000000005  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  normal  1  normal  1 
 
 
-
 
NC_008577  Shewana3_2658  histone family protein DNA-binding protein  47.3 
 
 		 90 aa  67.4  0.00000000006  Shewanella sp. ANA-3  Bacteria  unclonable  0.00000000180426  normal  0.730265 
 
 
-
 
NC_010627  Bphy_7326  histone family protein DNA-binding protein  45.33 
 
 		 92 aa  67.4  0.00000000006  Burkholderia phymatum STM815  Bacteria  normal  1  normal  0.076405 
 
 
-
 
NC_014230  CA2559_09623  probable DNA-binding protein HU  37.63 
 
 		 90 aa  67.4  0.00000000007  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.355669  n/a   
 
 
-
 
NC_010730  SYO3AOP1_0867  histone family protein DNA-binding protein  54.55 
 
 		 92 aa  67  0.00000000009  Sulfurihydrogenibium sp. YO3AOP1  Bacteria  unclonable  2.6253e-16  n/a   
 
 
-
 
NC_003910  CPS_2063  HU family DNA-binding protein  43.62 
 
 		 91 aa  67  0.00000000009  Colwellia psychrerythraea 34H  Bacteria  normal  0.832344  n/a   
 
 
-
 
NC_011761  AFE_1584  DNA-binding protein HU family protein  39.78 
 
 		 91 aa  67  0.00000000009  Acidithiobacillus ferrooxidans ATCC 23270  Bacteria  unclonable  0.000100307  n/a   
 
 
-
 
NC_011206  Lferr_1294  histone family protein DNA-binding protein  39.78 
 
 		 91 aa  67  0.00000000009  Acidithiobacillus ferrooxidans ATCC 53993  Bacteria  hitchhiker  0.000000180262  unclonable  0.000000000020236 
 
 
-
 
NC_008554  Sfum_1430  histone family protein DNA-binding protein  42.39 
 
 		 90 aa  67  0.00000000009  Syntrophobacter fumaroxidans MPOB  Bacteria  hitchhiker  0.000153062  normal  0.144736 
 
 
-
 
NC_002977  MCA0532  DNA-binding protein HU-beta  41.94 
 
 		 90 aa  66.6  0.0000000001  Methylococcus capsulatus str. Bath  Bacteria  decreased coverage  0.00043104  n/a   
 
 
-
 
NC_013173  Dbac_2463  histone family protein DNA-binding protein  41.94 
 
 		 90 aa  66.6  0.0000000001  Desulfomicrobium baculatum DSM 4028  Bacteria  normal  0.0228112  n/a   
 
 
-
 
NC_003910  CPS_3781  HU family DNA-binding protein  48.65 
 
 		 90 aa  66.2  0.0000000001  Colwellia psychrerythraea 34H  Bacteria  hitchhiker  0.0095051  n/a   
 
 
-
 
NC_010506  Swoo_4353  histone family protein DNA-binding protein  38.71 
 
 		 90 aa  66.6  0.0000000001  Shewanella woodyi ATCC 51908  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013530  Xcel_3268  histone family protein DNA-binding protein  42.22 
 
 		 93 aa  66.6  0.0000000001  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  1  n/a   
 
 
-
 
NC_010117  COXBURSA331_A1641  DNA-binding protein HU  39.78 
 
 		 94 aa  66.6  0.0000000001  Coxiella burnetii RSA 331  Bacteria  unclonable  7.02248e-19  n/a   
 
 
-
 
NC_009727  CBUD_0508  DNA-binding protein HU  39.78 
 
 		 94 aa  66.6  0.0000000001  Coxiella burnetii Dugway 5J108-111  Bacteria  hitchhiker  0.000000377509  n/a   
 
 
-
 
NC_009831  Ssed_0600  histone family protein DNA-binding protein  38.71 
 
 		 90 aa  66.6  0.0000000001  Shewanella sediminis HAW-EB3  Bacteria  normal  1  normal  1 
 
 
-
 
NC_013223  Dret_1900  histone family protein DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000001  Desulfohalobium retbaense DSM 5692  Bacteria  normal  1  normal  0.0802524 
 
 
-
 
NC_004347  SO_1797  HU family DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000002  Shewanella oneidensis MR-1  Bacteria  n/a    n/a   
 
 
-
 
NC_007643  Rru_A0292  integration host factor, beta subunit  37.23 
 
 		 100 aa  65.9  0.0000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.167242  n/a   
 
 
-
 
NC_009997  Sbal195_1630  histone family protein DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000002  Shewanella baltica OS195  Bacteria  unclonable  0.0000000159632  normal  1 
 
 
-
 
NC_009665  Shew185_1596  histone family protein DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000002  Shewanella baltica OS185  Bacteria  unclonable  0.00000000000169185  n/a   
 
 
-
 
NC_009379  Pnuc_2026  histone family protein DNA-binding protein  41.94 
 
 		 106 aa  65.9  0.0000000002  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  decreased coverage  0.00000760647  n/a   
 
 
-
 
NC_008321  Shewmr4_2492  histone family protein DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000002  Shewanella sp. MR-4  Bacteria  unclonable  0.000000000348442  normal  0.0842071 
 
 
-
 
NC_008322  Shewmr7_2560  histone family protein DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000002  Shewanella sp. MR-7  Bacteria  unclonable  0.000000135506  normal  0.0536414 
 
 
-
 
NC_009438  Sputcn32_1493  histone family protein DNA-binding protein  45.95 
 
 		 90 aa  66.2  0.0000000002  Shewanella putrefaciens CN-32  Bacteria  hitchhiker  0.00000000388309  n/a   
 
 
-
 
Page 1 of 3    << first  < prev  1  2  3    next >  last >>