More than 300 homologs were found in PanDaTox collection
for query gene CA2559_08241 on replicon NC_014230
Organism: Croceibacter atlanticus HTCC2559



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_014230  CA2559_08241  cold-shock DNA-binding domain protein  100 
 
 
64 aa  127  5.0000000000000004e-29  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013132  Cpin_3945  cold-shock DNA-binding domain protein  73.77 
 
 
67 aa  89  2e-17  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0509422  normal  0.707539 
 
 
-
 
NC_008255  CHU_2346  cold-shock DNA-binding protein family protein  63.49 
 
 
63 aa  87.8  5e-17  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.801075 
 
 
-
 
NC_014230  CA2559_12963  cold shock protein, putative DNA-binding protein  65.08 
 
 
63 aa  87.4  7e-17  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.189222  n/a   
 
 
-
 
NC_013730  Slin_3383  cold-shock DNA-binding domain protein  57.14 
 
 
198 aa  85.9  2e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.706051  normal  0.504445 
 
 
-
 
NC_013061  Phep_0004  Cold-shock protein DNA-binding  65.08 
 
 
63 aa  84.7  3e-16  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0668  cold-shock DNA-binding domain protein  64.52 
 
 
63 aa  85.1  3e-16  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.138203 
 
 
-
 
NC_013061  Phep_0530  Cold-shock protein DNA-binding  59.68 
 
 
63 aa  82.4  0.000000000000002  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.000000000113602 
 
 
-
 
NC_013037  Dfer_0895  cold-shock DNA-binding domain protein  61.9 
 
 
63 aa  80.9  0.000000000000005  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.164019 
 
 
-
 
NC_013037  Dfer_3018  cold-shock DNA-binding domain protein  61.9 
 
 
63 aa  80.9  0.000000000000005  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000000391893  normal  0.904013 
 
 
-
 
NC_013037  Dfer_4688  cold-shock DNA-binding domain protein  58.73 
 
 
63 aa  80.5  0.000000000000007  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0555964  normal 
 
 
-
 
NC_008255  CHU_0079  cold-shock DNA-binding protein family protein  60.32 
 
 
63 aa  80.1  0.000000000000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.109273 
 
 
-
 
NC_013037  Dfer_5157  cold-shock DNA-binding domain protein  61.9 
 
 
63 aa  79.3  0.00000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6389  cold-shock DNA-binding domain protein  61.54 
 
 
68 aa  77  0.00000000000009  Spirosoma linguale DSM 74  Bacteria  normal  0.113104  normal 
 
 
-
 
NC_009441  Fjoh_2638  cold-shock DNA-binding domain-containing protein  56.45 
 
 
63 aa  72  0.000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0531949  n/a   
 
 
-
 
NC_013037  Dfer_4008  cold-shock DNA-binding domain protein  59.38 
 
 
64 aa  72.4  0.000000000002  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0962  cold-shock DNA-binding protein family protein  51.61 
 
 
151 aa  72.4  0.000000000002  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_007760  Adeh_1274  cold-shock DNA-binding protein family protein  53.85 
 
 
67 aa  72  0.000000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2588  cold-shock DNA-binding domain protein  53.85 
 
 
67 aa  72  0.000000000003  Anaeromyxobacter sp. K  Bacteria  normal  0.110334  n/a   
 
 
-
 
NC_011891  A2cp1_2681  cold-shock DNA-binding domain protein  53.85 
 
 
67 aa  72  0.000000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0114675  n/a   
 
 
-
 
NC_013061  Phep_1732  Cold-shock protein DNA-binding  50.79 
 
 
63 aa  70.9  0.000000000006  Pedobacter heparinus DSM 2366  Bacteria  normal  0.477747  normal  0.0104533 
 
 
-
 
NC_009675  Anae109_2494  cold-shock DNA-binding domain-containing protein  49.25 
 
 
67 aa  70.1  0.000000000009  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.170049  decreased coverage  0.000196654 
 
 
-
 
NC_009441  Fjoh_1247  cold-shock DNA-binding domain-containing protein  53.12 
 
 
64 aa  67.8  0.00000000005  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_010830  Aasi_0637  hypothetical protein  49.25 
 
 
67 aa  66.6  0.0000000001  Candidatus Amoebophilus asiaticus 5a2  Bacteria  n/a    normal  0.624462 
 
 
-
 
NC_011662  Tmz1t_1681  cold-shock DNA-binding domain protein  48.48 
 
 
69 aa  66.2  0.0000000001  Thauera sp. MZ1T  Bacteria  normal  0.248337  n/a   
 
 
-
 
NC_007760  Adeh_3176  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  65.1  0.0000000003  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_3366  cold-shock DNA-binding domain protein  49.25 
 
 
67 aa  65.1  0.0000000003  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_2532  cold-shock DNA-binding domain-containing protein  53.85 
 
 
65 aa  65.1  0.0000000003  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.19716  normal  0.287944 
 
 
-
 
NC_010508  Bcenmc03_0476  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.528893 
 
 
-
 
NC_006348  BMA2791  cold-shock domain-contain protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia mallei ATCC 23344  Bacteria  normal  0.827238  n/a   
 
 
-
 
NC_009074  BURPS668_3598  CspE-related protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia pseudomallei 668  Bacteria  normal  0.164204  n/a   
 
 
-
 
NC_007434  BURPS1710b_3609  cold shock transcription regulator protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007510  Bcep18194_A3591  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia sp. 383  Bacteria  normal  normal  0.724551 
 
 
-
 
NC_009080  BMA10247_3184  cold-shock domain-contain protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3622  cold-shock domain-contain protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2936  cold-shock domain-contain protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_008836  BMA10229_A1750  cold-shock domain-contain protein  46.27 
 
 
67 aa  64.7  0.0000000004  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_010084  Bmul_2894  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0694911  normal  0.905374 
 
 
-
 
NC_008060  Bcen_2602  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0673828  n/a   
 
 
-
 
NC_011145  AnaeK_3292  cold-shock DNA-binding domain protein  47.76 
 
 
67 aa  64.7  0.0000000004  Anaeromyxobacter sp. K  Bacteria  hitchhiker  0.0070619  n/a   
 
 
-
 
NC_008390  Bamb_0408  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia ambifaria AMMD  Bacteria  normal  0.125835  n/a   
 
 
-
 
NC_008542  Bcen2424_0503  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_010551  BamMC406_0434  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  64.7  0.0000000004  Burkholderia ambifaria MC40-6  Bacteria  normal  0.157399  normal  0.399503 
 
 
-
 
NC_008699  Noca_2869  cold-shock DNA-binding protein family protein  50 
 
 
67 aa  64.3  0.0000000005  Nocardioides sp. JS614  Bacteria  normal  0.0181409  n/a   
 
 
-
 
NC_009675  Anae109_4117  cold-shock DNA-binding domain-containing protein  46.27 
 
 
67 aa  63.9  0.0000000007  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.327381  normal  0.21845 
 
 
-
 
NC_008825  Mpe_A2202  cold-shock DNA-binding protein family protein  46.27 
 
 
69 aa  63.5  0.0000000009  Methylibium petroleiphilum PM1  Bacteria  normal  normal  0.532688 
 
 
-
 
NC_007348  Reut_B5340  cold-shock DNA-binding protein family protein  44.78 
 
 
83 aa  62.8  0.000000001  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_0988  cold-shock DNA-binding protein family protein  46.27 
 
 
67 aa  63.2  0.000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_1045  cold-shock DNA-binding domain protein  46.27 
 
 
67 aa  63.2  0.000000001  Anaeromyxobacter sp. K  Bacteria  normal  0.396466  n/a   
 
 
-
 
NC_011891  A2cp1_1049  cold-shock DNA-binding domain protein  46.27 
 
 
67 aa  63.2  0.000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_011891  A2cp1_2724  cold-shock DNA-binding domain protein  50.77 
 
 
66 aa  62.8  0.000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.720009  n/a   
 
 
-
 
NC_007760  Adeh_1235  cold-shock DNA-binding protein family protein  50.77 
 
 
66 aa  62.8  0.000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2630  cold-shock DNA-binding domain protein  50.77 
 
 
66 aa  62.8  0.000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.681724  n/a   
 
 
-
 
NC_013501  Rmar_1213  cold-shock DNA-binding domain protein  43.48 
 
 
70 aa  62  0.000000003  Rhodothermus marinus DSM 4252  Bacteria  normal  0.915345  n/a   
 
 
-
 
NC_007963  Csal_2503  cold-shock DNA-binding protein family protein  42.65 
 
 
68 aa  61.6  0.000000004  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00000079429  n/a   
 
 
-
 
NC_007974  Rmet_5816  major cold shock protein  43.28 
 
 
67 aa  61.6  0.000000004  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_3528  cold-shock DNA-binding domain protein  44.78 
 
 
67 aa  61.2  0.000000005  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00720053  normal  0.332876 
 
 
-
 
NC_007951  Bxe_A0430  cold-shock DNA-binding protein family protein  44.78 
 
 
67 aa  61.2  0.000000005  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000180464  normal 
 
 
-
 
NC_013730  Slin_4054  cold-shock DNA-binding domain protein  47.54 
 
 
148 aa  60.8  0.000000005  Spirosoma linguale DSM 74  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1914  cold-shock DNA-binding protein family protein  46.27 
 
 
68 aa  60.8  0.000000006  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009675  Anae109_4042  cold-shock DNA-binding domain-containing protein  44.78 
 
 
67 aa  60.8  0.000000006  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_010681  Bphyt_2202  cold-shock DNA-binding domain protein  43.28 
 
 
67 aa  60.5  0.000000007  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  42.65 
 
 
68 aa  60.5  0.000000007  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_007951  Bxe_A2061  cold-shock DNA-binding protein family protein  43.28 
 
 
67 aa  60.5  0.000000007  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.131927 
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  44.12 
 
 
68 aa  60.5  0.000000008  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  46.88 
 
 
67 aa  60.5  0.000000009  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_010524  Lcho_1093  cold-shock DNA-binding domain-containing protein  46.27 
 
 
72 aa  60.1  0.000000009  Leptothrix cholodnii SP-6  Bacteria  n/a    normal 
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  43.28 
 
 
67 aa  59.7  0.00000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_009338  Mflv_5227  cold-shock DNA-binding domain-containing protein  46.27 
 
 
67 aa  59.7  0.00000001  Mycobacterium gilvum PYR-GCK  Bacteria  normal  0.54507  normal 
 
 
-
 
NC_009675  Anae109_0273  cold-shock DNA-binding domain-containing protein  44.62 
 
 
67 aa  59.7  0.00000001  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.355642 
 
 
-
 
NC_013132  Cpin_5168  cold-shock DNA-binding domain protein  45.16 
 
 
147 aa  59.7  0.00000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.293289  hitchhiker  0.00537558 
 
 
-
 
NC_010682  Rpic_2735  cold-shock DNA-binding domain protein  43.94 
 
 
67 aa  59.7  0.00000001  Ralstonia pickettii 12J  Bacteria  normal  0.723886  normal  0.792546 
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  43.28 
 
 
67 aa  59.7  0.00000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_012856  Rpic12D_2345  cold-shock DNA-binding domain protein  43.94 
 
 
67 aa  59.7  0.00000001  Ralstonia pickettii 12D  Bacteria  normal  0.574294  normal  0.405321 
 
 
-
 
NC_007964  Nham_2147  cold-shock DNA-binding domain-containing protein  47.06 
 
 
68 aa  60.1  0.00000001  Nitrobacter hamburgensis X14  Bacteria  normal  0.135641  n/a   
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  43.28 
 
 
67 aa  59.7  0.00000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_19390  cold-shock DNA-binding protein family  46.88 
 
 
67 aa  60.1  0.00000001  Micrococcus luteus NCTC 2665  Bacteria  normal  0.704539  n/a   
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  43.94 
 
 
67 aa  58.9  0.00000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_009077  Mjls_2334  cold-shock DNA-binding protein family protein  46.27 
 
 
67 aa  58.9  0.00000002  Mycobacterium sp. JLS  Bacteria  normal  0.213577  normal  0.0207687 
 
 
-
 
NC_006349  BMAA0899  cold-shock domain-contain protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_009953  Sare_3353  cold-shock DNA-binding domain-containing protein  44.78 
 
 
67 aa  58.9  0.00000002  Salinispora arenicola CNS-205  Bacteria  normal  0.0827794  hitchhiker  0.00618792 
 
 
-
 
NC_009380  Strop_3123  cold-shock protein, DNA-binding  44.78 
 
 
67 aa  58.9  0.00000002  Salinispora tropica CNB-440  Bacteria  normal  0.0870951  normal  0.605091 
 
 
-
 
NC_010678  Rpic_3782  cold-shock DNA-binding domain protein  43.08 
 
 
67 aa  58.9  0.00000002  Ralstonia pickettii 12J  Bacteria  normal  0.0399631  normal  0.208523 
 
 
-
 
NC_007435  BURPS1710b_A0388  cold shock transcription regulator protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1040  cold-shock DNA-binding domain-containing protein  46.27 
 
 
67 aa  58.9  0.00000002  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.366618  normal 
 
 
-
 
NC_013739  Cwoe_5002  cold-shock DNA-binding domain protein  44.78 
 
 
67 aa  58.9  0.00000002  Conexibacter woesei DSM 14684  Bacteria  normal  0.0802588  normal 
 
 
-
 
NC_012669  Bcav_2426  cold-shock DNA-binding domain protein  43.28 
 
 
67 aa  59.3  0.00000002  Beutenbergia cavernae DSM 12333  Bacteria  normal  0.386206  normal  0.184038 
 
 
-
 
NC_012857  Rpic12D_3895  cold-shock DNA-binding domain protein  43.08 
 
 
67 aa  58.9  0.00000002  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_007952  Bxe_B2780  cold-shock DNA-binding protein family protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000626517  normal 
 
 
-
 
NC_012848  Rleg_5163  cold-shock DNA-binding domain protein  56.36 
 
 
67 aa  59.3  0.00000002  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.160929  normal  0.551155 
 
 
-
 
NC_009075  BURPS668_A1944  hypothetical protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_008146  Mmcs_2295  cold-shock DNA-binding protein family protein  46.27 
 
 
67 aa  58.9  0.00000002  Mycobacterium sp. MCS  Bacteria  normal  0.904352  n/a   
 
 
-
 
NC_008148  Rxyl_0290  cold-shock DNA-binding protein family protein  44.78 
 
 
67 aa  58.9  0.00000002  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_009079  BMA10247_A1442  cold-shock domain-contain protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1853  cold-shock domain-contain protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia pseudomallei 1106a  Bacteria  normal  0.537737  n/a   
 
 
-
 
NC_008784  BMASAVP1_0482  cold-shock domain-contain protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_010676  Bphyt_6765  cold-shock DNA-binding domain protein  41.79 
 
 
67 aa  59.3  0.00000002  Burkholderia phytofirmans PsJN  Bacteria  normal  0.929729  normal  0.307986 
 
 
-
 
NC_008705  Mkms_2342  cold-shock DNA-binding protein family protein  46.27 
 
 
67 aa  58.9  0.00000002  Mycobacterium sp. KMS  Bacteria  normal  normal  0.432439 
 
 
-
 
NC_008835  BMA10229_0167  cold-shock domain-contain protein  41.79 
 
 
67 aa  58.9  0.00000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007336  Reut_C6014  cold-shock DNA-binding protein family protein  41.79 
 
 
67 aa  58.5  0.00000003  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
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