Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp1053 |
Symbol | cspD2 |
ID | 1223365 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 1334911 |
End bp | 1335114 |
Gene Length | 204 bp |
Protein Length | 67 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 637240918 |
Product | cold shock-like transcription regulator protein |
Protein accession | NP_522614 |
Protein GI | 17549274 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.470883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCTACTG GTACCGTCAA GTGGTTCAAC GACGCTAAGG GTTTCGGCTT TATTACCCCG GATGAAGGCG GCGAGGACCT TTTCGCGCAT TTCTCTGCGA TCAACATGCA AGGGTTCAAG ACCCTGAAGG AAGGTCAACG CGTTTCGTTT GAAATCACGC AAGGCCCGAA GGGCAAGCAA GCCTCGAATA TCCAGGCGGC TTGA
|
Protein sequence | MATGTVKWFN DAKGFGFITP DEGGEDLFAH FSAINMQGFK TLKEGQRVSF EITQGPKGKQ ASNIQAA
|
| |