More than 300 homologs were found in PanDaTox collection
for query gene Slin_0668 on replicon NC_013730
Organism: Spirosoma linguale DSM 74



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013730  Slin_0668  cold-shock DNA-binding domain protein  100 
 
 
63 aa  127  6e-29  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.138203 
 
 
-
 
NC_013730  Slin_3383  cold-shock DNA-binding domain protein  74.19 
 
 
198 aa  104  5e-22  Spirosoma linguale DSM 74  Bacteria  normal  0.706051  normal  0.504445 
 
 
-
 
NC_013061  Phep_0530  Cold-shock protein DNA-binding  71.43 
 
 
63 aa  97.8  5e-20  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.000000000113602 
 
 
-
 
NC_013037  Dfer_3018  cold-shock DNA-binding domain protein  72.58 
 
 
63 aa  96.3  1e-19  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000000391893  normal  0.904013 
 
 
-
 
NC_013061  Phep_0004  Cold-shock protein DNA-binding  70.97 
 
 
63 aa  93.6  8e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013037  Dfer_0895  cold-shock DNA-binding domain protein  69.35 
 
 
63 aa  92  3e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.164019 
 
 
-
 
NC_013037  Dfer_4688  cold-shock DNA-binding domain protein  69.35 
 
 
63 aa  91.3  4e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0555964  normal 
 
 
-
 
NC_013037  Dfer_5157  cold-shock DNA-binding domain protein  66.13 
 
 
63 aa  89  2e-17  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_009441  Fjoh_2638  cold-shock DNA-binding domain-containing protein  63.49 
 
 
63 aa  88.6  3e-17  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0531949  n/a   
 
 
-
 
NC_008255  CHU_2346  cold-shock DNA-binding protein family protein  63.49 
 
 
63 aa  86.3  1e-16  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.801075 
 
 
-
 
NC_014230  CA2559_08241  cold-shock DNA-binding domain protein  64.52 
 
 
64 aa  85.1  3e-16  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013061  Phep_1732  Cold-shock protein DNA-binding  62.3 
 
 
63 aa  82  0.000000000000003  Pedobacter heparinus DSM 2366  Bacteria  normal  0.477747  normal  0.0104533 
 
 
-
 
NC_008255  CHU_0079  cold-shock DNA-binding protein family protein  62.3 
 
 
63 aa  76.3  0.0000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.109273 
 
 
-
 
NC_014230  CA2559_12963  cold shock protein, putative DNA-binding protein  57.14 
 
 
63 aa  75.5  0.0000000000002  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.189222  n/a   
 
 
-
 
NC_013037  Dfer_4008  cold-shock DNA-binding domain protein  64.52 
 
 
64 aa  75.1  0.0000000000003  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_6389  cold-shock DNA-binding domain protein  64.52 
 
 
68 aa  74.3  0.0000000000005  Spirosoma linguale DSM 74  Bacteria  normal  0.113104  normal 
 
 
-
 
NC_011901  Tgr7_0172  cold-shock DNA-binding domain protein  57.81 
 
 
67 aa  74.3  0.0000000000005  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.0000163048  n/a   
 
 
-
 
NC_009079  BMA10247_A1442  cold-shock domain-contain protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_006349  BMAA0899  cold-shock domain-contain protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia mallei ATCC 23344  Bacteria  normal  n/a   
 
 
-
 
NC_008835  BMA10229_0167  cold-shock domain-contain protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_007435  BURPS1710b_A0388  cold shock transcription regulator protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_009078  BURPS1106A_A1853  cold-shock domain-contain protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia pseudomallei 1106a  Bacteria  normal  0.537737  n/a   
 
 
-
 
NC_008784  BMASAVP1_0482  cold-shock domain-contain protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia mallei SAVP1  Bacteria  normal  n/a   
 
 
-
 
NC_009075  BURPS668_A1944  hypothetical protein  55.38 
 
 
67 aa  73.9  0.0000000000007  Burkholderia pseudomallei 668  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1002  cold-shock domain-contain protein  53.85 
 
 
67 aa  73.6  0.0000000000009  Burkholderia thailandensis E264  Bacteria  normal  0.229308  n/a   
 
 
-
 
NC_010676  Bphyt_6907  cold-shock DNA-binding domain protein  53.73 
 
 
67 aa  73.2  0.000000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  0.240211  normal  0.394944 
 
 
-
 
NC_007952  Bxe_B2951  cold-shock DNA-binding protein family protein  53.73 
 
 
77 aa  73.2  0.000000000001  Burkholderia xenovorans LB400  Bacteria  normal  0.15288  normal 
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  52.24 
 
 
67 aa  73.6  0.000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_013132  Cpin_3945  cold-shock DNA-binding domain protein  57.89 
 
 
67 aa  72.8  0.000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0509422  normal  0.707539 
 
 
-
 
NC_008255  CHU_0962  cold-shock DNA-binding protein family protein  55.56 
 
 
151 aa  73.2  0.000000000001  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_007947  Mfla_2140  cold-shock DNA-binding protein family protein  49.25 
 
 
67 aa  72  0.000000000002  Methylobacillus flagellatus KT  Bacteria  decreased coverage  0.000000000648799  normal 
 
 
-
 
NC_010086  Bmul_4166  cold-shock DNA-binding domain-containing protein  54.69 
 
 
67 aa  72  0.000000000002  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.745487  normal 
 
 
-
 
NC_010515  Bcenmc03_5838  cold-shock DNA-binding domain-containing protein  56.25 
 
 
67 aa  72  0.000000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  0.284132  normal 
 
 
-
 
NC_007511  Bcep18194_B1449  cold-shock DNA-binding protein family protein  56.25 
 
 
67 aa  72  0.000000000003  Burkholderia sp. 383  Bacteria  normal  normal 
 
 
-
 
NC_008061  Bcen_3904  cold-shock DNA-binding domain-containing protein  56.25 
 
 
67 aa  72  0.000000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  n/a   
 
 
-
 
NC_011662  Tmz1t_1251  cold-shock DNA-binding domain protein  50.75 
 
 
67 aa  71.6  0.000000000003  Thauera sp. MZ1T  Bacteria  normal  0.791861  n/a   
 
 
-
 
NC_008543  Bcen2424_4464  cold-shock DNA-binding domain-containing protein  56.25 
 
 
67 aa  72  0.000000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5169  cold-shock DNA-binding domain-containing protein  53.73 
 
 
67 aa  71.6  0.000000000003  Burkholderia phymatum STM815  Bacteria  normal  normal 
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  52.38 
 
 
68 aa  71.6  0.000000000004  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_007963  Csal_2503  cold-shock DNA-binding protein family protein  51.52 
 
 
68 aa  71.6  0.000000000004  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00000079429  n/a   
 
 
-
 
NC_009441  Fjoh_1247  cold-shock DNA-binding domain-containing protein  55.74 
 
 
64 aa  71.2  0.000000000004  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_014151  Cfla_3141  cold-shock DNA-binding domain protein  52.24 
 
 
67 aa  71.2  0.000000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  0.0244532  hitchhiker  0.00153434 
 
 
-
 
NC_007348  Reut_B5340  cold-shock DNA-binding protein family protein  53.12 
 
 
83 aa  70.9  0.000000000005  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4361  cold-shock DNA-binding domain-containing protein  54.69 
 
 
67 aa  71.2  0.000000000005  Burkholderia ambifaria MC40-6  Bacteria  normal  normal 
 
 
-
 
NC_010627  Bphy_7382  cold-shock DNA-binding domain-containing protein  53.85 
 
 
67 aa  70.9  0.000000000005  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0708981 
 
 
-
 
NC_008391  Bamb_3900  cold-shock DNA-binding domain-containing protein  54.69 
 
 
67 aa  71.2  0.000000000005  Burkholderia ambifaria AMMD  Bacteria  normal  0.878106  normal 
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  52.31 
 
 
67 aa  70.9  0.000000000006  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_009675  Anae109_4117  cold-shock DNA-binding domain-containing protein  53.85 
 
 
67 aa  70.5  0.000000000008  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  0.327381  normal  0.21845 
 
 
-
 
NC_007963  Csal_1668  cold-shock DNA-binding protein family protein  50.75 
 
 
67 aa  70.5  0.000000000008  Chromohalobacter salexigens DSM 3043  Bacteria  decreased coverage  0.0000281076  n/a   
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  50 
 
 
68 aa  70.1  0.000000000009  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_012857  Rpic12D_4386  cold-shock DNA-binding domain protein  53.12 
 
 
67 aa  69.7  0.00000000001  Ralstonia pickettii 12D  Bacteria  normal  normal  0.490734 
 
 
-
 
NC_011891  A2cp1_0273  cold-shock DNA-binding domain protein  54.69 
 
 
67 aa  69.7  0.00000000001  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A2246  cold-shock DNA-binding domain-containing protein  50.75 
 
 
67 aa  70.1  0.00000000001  Nitrosospira multiformis ATCC 25196  Bacteria  decreased coverage  0.000000157436  n/a   
 
 
-
 
NC_007760  Adeh_0252  cold-shock DNA-binding protein family protein  54.69 
 
 
67 aa  69.7  0.00000000001  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  0.994476  n/a   
 
 
-
 
NC_010681  Bphyt_2202  cold-shock DNA-binding domain protein  50.77 
 
 
67 aa  69.3  0.00000000001  Burkholderia phytofirmans PsJN  Bacteria  normal  normal 
 
 
-
 
NC_009379  Pnuc_1750  cold-shock DNA-binding domain-containing protein  49.25 
 
 
67 aa  69.3  0.00000000001  Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1  Bacteria  normal  0.0957427  n/a   
 
 
-
 
NC_007951  Bxe_A2061  cold-shock DNA-binding protein family protein  50.77 
 
 
67 aa  69.3  0.00000000001  Burkholderia xenovorans LB400  Bacteria  normal  normal  0.131927 
 
 
-
 
NC_007974  Rmet_5816  major cold shock protein  53.12 
 
 
67 aa  70.1  0.00000000001  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_011145  AnaeK_0262  cold-shock DNA-binding domain protein  54.69 
 
 
67 aa  69.7  0.00000000001  Anaeromyxobacter sp. K  Bacteria  normal  n/a   
 
 
-
 
NC_010531  Pnec_1465  cold-shock DNA-binding domain protein  49.25 
 
 
67 aa  69.3  0.00000000001  Polynucleobacter necessarius subsp. necessarius STIR1  Bacteria  decreased coverage  0.000499386  normal  0.887495 
 
 
-
 
NC_010678  Rpic_4276  cold-shock DNA-binding domain protein  53.12 
 
 
67 aa  69.7  0.00000000001  Ralstonia pickettii 12J  Bacteria  normal  normal 
 
 
-
 
NC_010623  Bphy_5269  cold-shock DNA-binding domain-containing protein  52.31 
 
 
67 aa  70.1  0.00000000001  Burkholderia phymatum STM815  Bacteria  normal  normal  0.0859722 
 
 
-
 
NC_011886  Achl_1131  cold-shock DNA-binding domain protein  49.23 
 
 
67 aa  69.7  0.00000000001  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal  0.294478 
 
 
-
 
NC_008700  Sama_2963  cold-shock DNA-binding domain-containing protein  53.12 
 
 
70 aa  69.7  0.00000000001  Shewanella amazonensis SB2B  Bacteria  normal  normal  0.711924 
 
 
-
 
NC_003296  RSp1053  cold shock-like transcription regulator protein  49.25 
 
 
67 aa  68.9  0.00000000002  Ralstonia solanacearum GMI1000  Bacteria  normal  0.470883  normal 
 
 
-
 
NC_011891  A2cp1_2681  cold-shock DNA-binding domain protein  49.25 
 
 
67 aa  69.3  0.00000000002  Anaeromyxobacter dehalogenans 2CP-1  Bacteria  normal  0.0114675  n/a   
 
 
-
 
NC_006348  BMA2791  cold-shock domain-contain protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.827238  n/a   
 
 
-
 
NC_010682  Rpic_2735  cold-shock DNA-binding domain protein  47.76 
 
 
67 aa  68.9  0.00000000002  Ralstonia pickettii 12J  Bacteria  normal  0.723886  normal  0.792546 
 
 
-
 
NC_007348  Reut_B5342  cold-shock DNA-binding protein family protein  50.75 
 
 
67 aa  69.3  0.00000000002  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_007404  Tbd_0855  cold-shock DNA-binding protein family protein  50.77 
 
 
68 aa  68.9  0.00000000002  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.563444  normal  0.445485 
 
 
-
 
NC_013739  Cwoe_1892  cold-shock DNA-binding domain protein  54.69 
 
 
67 aa  69.3  0.00000000002  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_007434  BURPS1710b_3609  cold shock transcription regulator protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1914  cold-shock DNA-binding protein family protein  48.53 
 
 
68 aa  69.3  0.00000000002  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  n/a   
 
 
-
 
NC_009076  BURPS1106A_3622  cold-shock domain-contain protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2936  cold-shock domain-contain protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_007760  Adeh_1274  cold-shock DNA-binding protein family protein  49.25 
 
 
67 aa  69.3  0.00000000002  Anaeromyxobacter dehalogenans 2CP-C  Bacteria  normal  n/a   
 
 
-
 
NC_010622  Bphy_2727  cold-shock DNA-binding domain-containing protein  50.75 
 
 
67 aa  69.3  0.00000000002  Burkholderia phymatum STM815  Bacteria  normal  0.312449  normal 
 
 
-
 
NC_007974  Rmet_5818  cold-shock DNA-binding protein family  50.75 
 
 
67 aa  69.3  0.00000000002  Cupriavidus metallidurans CH34  Bacteria  normal  normal 
 
 
-
 
NC_012856  Rpic12D_2345  cold-shock DNA-binding domain protein  47.76 
 
 
67 aa  68.9  0.00000000002  Ralstonia pickettii 12D  Bacteria  normal  0.574294  normal  0.405321 
 
 
-
 
NC_008836  BMA10229_A1750  cold-shock domain-contain protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3184  cold-shock domain-contain protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_011145  AnaeK_2588  cold-shock DNA-binding domain protein  49.25 
 
 
67 aa  69.3  0.00000000002  Anaeromyxobacter sp. K  Bacteria  normal  0.110334  n/a   
 
 
-
 
NC_010622  Bphy_0567  cold-shock DNA-binding domain-containing protein  50.75 
 
 
68 aa  69.3  0.00000000002  Burkholderia phymatum STM815  Bacteria  unclonable  0.0000000000101913  hitchhiker  0.000143899 
 
 
-
 
NC_008541  Arth_1055  cold-shock DNA-binding protein family protein  49.23 
 
 
67 aa  69.3  0.00000000002  Arthrobacter sp. FB24  Bacteria  normal  0.481948  n/a   
 
 
-
 
NC_009074  BURPS668_3598  CspE-related protein  52.31 
 
 
67 aa  68.9  0.00000000002  Burkholderia pseudomallei 668  Bacteria  normal  0.164204  n/a   
 
 
-
 
NC_011879  Achl_4023  cold-shock DNA-binding domain protein  50.77 
 
 
67 aa  68.9  0.00000000002  Arthrobacter chlorophenolicus A6  Bacteria  n/a    hitchhiker  0.00477592 
 
 
-
 
NC_010623  Bphy_4995  cold-shock DNA-binding domain-containing protein  49.23 
 
 
67 aa  68.6  0.00000000003  Burkholderia phymatum STM815  Bacteria  normal  0.833631  normal 
 
 
-
 
NC_010676  Bphyt_6765  cold-shock DNA-binding domain protein  50.77 
 
 
67 aa  68.2  0.00000000004  Burkholderia phytofirmans PsJN  Bacteria  normal  0.929729  normal  0.307986 
 
 
-
 
NC_007951  Bxe_A0430  cold-shock DNA-binding protein family protein  52.31 
 
 
67 aa  68.2  0.00000000004  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.0000180464  normal 
 
 
-
 
NC_007951  Bxe_A2596  cold-shock DNA-binding protein family protein  49.23 
 
 
67 aa  68.2  0.00000000004  Burkholderia xenovorans LB400  Bacteria  normal  0.111063  normal 
 
 
-
 
NC_007952  Bxe_B2780  cold-shock DNA-binding protein family protein  50.77 
 
 
67 aa  68.2  0.00000000004  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000626517  normal 
 
 
-
 
NC_010681  Bphyt_3528  cold-shock DNA-binding domain protein  52.31 
 
 
67 aa  68.2  0.00000000004  Burkholderia phytofirmans PsJN  Bacteria  decreased coverage  0.00720053  normal  0.332876 
 
 
-
 
NC_009675  Anae109_4042  cold-shock DNA-binding domain-containing protein  52.31 
 
 
67 aa  68.2  0.00000000004  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal 
 
 
-
 
NC_007336  Reut_C6014  cold-shock DNA-binding protein family protein  50.77 
 
 
67 aa  67.8  0.00000000005  Ralstonia eutropha JMP134  Bacteria  normal  n/a   
 
 
-
 
NC_011886  Achl_0641  cold-shock DNA-binding domain protein  51.56 
 
 
67 aa  67.8  0.00000000005  Arthrobacter chlorophenolicus A6  Bacteria  n/a    normal 
 
 
-
 
NC_007951  Bxe_A0798  cold-shock DNA-binding protein family protein  50.77 
 
 
68 aa  67.8  0.00000000005  Burkholderia xenovorans LB400  Bacteria  decreased coverage  0.0000000000000106482  normal 
 
 
-
 
NC_007964  Nham_2147  cold-shock DNA-binding domain-containing protein  51.52 
 
 
68 aa  67.8  0.00000000005  Nitrobacter hamburgensis X14  Bacteria  normal  0.135641  n/a   
 
 
-
 
NC_009675  Anae109_0273  cold-shock DNA-binding domain-containing protein  52.31 
 
 
67 aa  67.8  0.00000000005  Anaeromyxobacter sp. Fw109-5  Bacteria  normal  normal  0.355642 
 
 
-
 
NC_011369  Rleg2_2743  cold-shock DNA-binding domain protein  59.42 
 
 
71 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM2304  Bacteria  normal  normal 
 
 
-
 
NC_012850  Rleg_3003  cold-shock DNA-binding domain protein  59.42 
 
 
71 aa  67.8  0.00000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  normal  0.667413 
 
 
-
 
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