More than 300 homologs were found in PanDaTox collection
for query gene Dfer_4688 on replicon NC_013037
Organism: Dyadobacter fermentans DSM 18053



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013037  Dfer_4688  cold-shock DNA-binding domain protein  100 
 
 
63 aa  128  3e-29  Dyadobacter fermentans DSM 18053  Bacteria  normal  0.0555964  normal 
 
 
-
 
NC_013037  Dfer_0895  cold-shock DNA-binding domain protein  74.6 
 
 
63 aa  100  8e-21  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal  0.164019 
 
 
-
 
NC_013037  Dfer_3018  cold-shock DNA-binding domain protein  76.19 
 
 
63 aa  97.8  4e-20  Dyadobacter fermentans DSM 18053  Bacteria  hitchhiker  0.0000000391893  normal  0.904013 
 
 
-
 
NC_013061  Phep_0004  Cold-shock protein DNA-binding  69.84 
 
 
63 aa  96.3  1e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  normal 
 
 
-
 
NC_013061  Phep_1732  Cold-shock protein DNA-binding  69.84 
 
 
63 aa  96.3  1e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  0.477747  normal  0.0104533 
 
 
-
 
NC_013061  Phep_0530  Cold-shock protein DNA-binding  69.35 
 
 
63 aa  96.3  1e-19  Pedobacter heparinus DSM 2366  Bacteria  normal  hitchhiker  0.000000000113602 
 
 
-
 
NC_013037  Dfer_5157  cold-shock DNA-binding domain protein  66.67 
 
 
63 aa  93.2  1e-18  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_013730  Slin_0668  cold-shock DNA-binding domain protein  69.35 
 
 
63 aa  91.3  4e-18  Spirosoma linguale DSM 74  Bacteria  normal  normal  0.138203 
 
 
-
 
NC_013730  Slin_3383  cold-shock DNA-binding domain protein  60.32 
 
 
198 aa  86.3  1e-16  Spirosoma linguale DSM 74  Bacteria  normal  0.706051  normal  0.504445 
 
 
-
 
NC_009441  Fjoh_2638  cold-shock DNA-binding domain-containing protein  64.52 
 
 
63 aa  86.3  1e-16  Flavobacterium johnsoniae UW101  Bacteria  normal  0.0531949  n/a   
 
 
-
 
NC_008255  CHU_2346  cold-shock DNA-binding protein family protein  63.49 
 
 
63 aa  84  6e-16  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.801075 
 
 
-
 
NC_014230  CA2559_08241  cold-shock DNA-binding domain protein  58.73 
 
 
64 aa  80.5  0.000000000000007  Croceibacter atlanticus HTCC2559  Bacteria  normal  n/a   
 
 
-
 
NC_013037  Dfer_4008  cold-shock DNA-binding domain protein  65.62 
 
 
64 aa  80.1  0.000000000000009  Dyadobacter fermentans DSM 18053  Bacteria  normal  normal 
 
 
-
 
NC_008255  CHU_0079  cold-shock DNA-binding protein family protein  58.73 
 
 
63 aa  77.8  0.00000000000005  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal  0.109273 
 
 
-
 
NC_013132  Cpin_3945  cold-shock DNA-binding domain protein  57.38 
 
 
67 aa  76.6  0.0000000000001  Chitinophaga pinensis DSM 2588  Bacteria  normal  0.0509422  normal  0.707539 
 
 
-
 
NC_009441  Fjoh_1247  cold-shock DNA-binding domain-containing protein  62.5 
 
 
64 aa  75.5  0.0000000000002  Flavobacterium johnsoniae UW101  Bacteria  normal  n/a   
 
 
-
 
NC_013730  Slin_6389  cold-shock DNA-binding domain protein  59.38 
 
 
68 aa  74.7  0.0000000000004  Spirosoma linguale DSM 74  Bacteria  normal  0.113104  normal 
 
 
-
 
NC_014230  CA2559_12963  cold shock protein, putative DNA-binding protein  53.97 
 
 
63 aa  74.7  0.0000000000004  Croceibacter atlanticus HTCC2559  Bacteria  normal  0.189222  n/a   
 
 
-
 
NC_008255  CHU_0962  cold-shock DNA-binding protein family protein  56.67 
 
 
151 aa  73.6  0.0000000000008  Cytophaga hutchinsonii ATCC 33406  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0492  putative cold-shock DNA-binding domain protein  52.24 
 
 
67 aa  73.2  0.000000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  n/a   
 
 
-
 
NC_011757  Mchl_1345  cold-shock DNA-binding domain protein  61.4 
 
 
69 aa  72.4  0.000000000002  Methylobacterium chloromethanicum CM4  Bacteria  normal  normal  0.708004 
 
 
-
 
NC_010172  Mext_1185  cold-shock protein DNA-binding  61.4 
 
 
69 aa  72.4  0.000000000002  Methylobacterium extorquens PA1  Bacteria  normal  normal  0.0202677 
 
 
-
 
NC_009708  YpsIP31758_5000  cold shock protein  50.75 
 
 
70 aa  72.8  0.000000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  normal  n/a   
 
 
-
 
NC_007963  Csal_2503  cold-shock DNA-binding protein family protein  49.25 
 
 
68 aa  72.4  0.000000000002  Chromohalobacter salexigens DSM 3043  Bacteria  hitchhiker  0.00000079429  n/a   
 
 
-
 
NC_010465  YPK_1740  cold-shock DNA-binding domain-containing protein  50.75 
 
 
70 aa  72.8  0.000000000002  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.183326  n/a   
 
 
-
 
NC_009832  Spro_3052  cold-shock DNA-binding domain-containing protein  50.75 
 
 
70 aa  72.4  0.000000000002  Serratia proteamaculans 568  Bacteria  normal  normal 
 
 
-
 
NC_011901  Tgr7_0172  cold-shock DNA-binding domain protein  54.69 
 
 
67 aa  72  0.000000000003  Thioalkalivibrio sp. HL-EbGR7  Bacteria  hitchhiker  0.0000163048  n/a   
 
 
-
 
NC_007298  Daro_3392  cold-shock DNA-binding protein family protein  52.31 
 
 
68 aa  71.2  0.000000000004  Dechloromonas aromatica RCB  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0175  cold-shock DNA-binding protein family protein  49.25 
 
 
67 aa  71.6  0.000000000004  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007643  Rru_A1521  cold-shock DNA-binding protein family protein  47.06 
 
 
68 aa  70.9  0.000000000005  Rhodospirillum rubrum ATCC 11170  Bacteria  normal  0.490356  n/a   
 
 
-
 
NC_012854  Rleg_6292  cold-shock DNA-binding domain protein  63.64 
 
 
67 aa  70.9  0.000000000005  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.392497  normal 
 
 
-
 
NC_011989  Avi_3086  cold shock protein  61.82 
 
 
67 aa  70.5  0.000000000008  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_012803  Mlut_19390  cold-shock DNA-binding protein family  51.56 
 
 
67 aa  70.5  0.000000000008  Micrococcus luteus NCTC 2665  Bacteria  normal  0.704539  n/a   
 
 
-
 
NC_013739  Cwoe_3948  cold-shock DNA-binding domain protein  52.24 
 
 
67 aa  70.5  0.000000000008  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_013739  Cwoe_1892  cold-shock DNA-binding domain protein  53.73 
 
 
67 aa  70.1  0.000000000009  Conexibacter woesei DSM 14684  Bacteria  normal  normal 
 
 
-
 
NC_008148  Rxyl_0290  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  70.1  0.000000000009  Rubrobacter xylanophilus DSM 9941  Bacteria  normal  n/a   
 
 
-
 
NC_007298  Daro_1388  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  69.7  0.00000000001  Dechloromonas aromatica RCB  Bacteria  decreased coverage  0.0000000000000202704  normal  0.239262 
 
 
-
 
NC_011901  Tgr7_0507  cold-shock DNA-binding domain protein  51.56 
 
 
67 aa  69.7  0.00000000001  Thioalkalivibrio sp. HL-EbGR7  Bacteria  normal  0.804223  n/a   
 
 
-
 
NC_006348  BMA2791  cold-shock domain-contain protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia mallei ATCC 23344  Bacteria  normal  0.827238  n/a   
 
 
-
 
NC_009832  Spro_2822  cold shock-like protein CspC  49.23 
 
 
69 aa  68.6  0.00000000002  Serratia proteamaculans 568  Bacteria  decreased coverage  0.00000000720852  decreased coverage  0.000019593 
 
 
-
 
NC_007434  BURPS1710b_3609  cold shock transcription regulator protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007651  BTH_I2936  cold-shock domain-contain protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia thailandensis E264  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2474  cold shock-like protein CspC  49.23 
 
 
69 aa  68.6  0.00000000002  Yersinia pseudotuberculosis YPIII  Bacteria  hitchhiker  0.00166025  n/a   
 
 
-
 
NC_009708  YpsIP31758_5001  cold shock protein  49.23 
 
 
69 aa  68.6  0.00000000002  Yersinia pseudotuberculosis IP 31758  Bacteria  hitchhiker  1.56924e-17  n/a   
 
 
-
 
NC_008836  BMA10229_A1750  cold-shock domain-contain protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia mallei NCTC 10229  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_3598  CspE-related protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia pseudomallei 668  Bacteria  normal  0.164204  n/a   
 
 
-
 
NC_009076  BURPS1106A_3622  cold-shock domain-contain protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia pseudomallei 1106a  Bacteria  normal  n/a   
 
 
-
 
NC_009080  BMA10247_3184  cold-shock domain-contain protein  47.76 
 
 
67 aa  69.3  0.00000000002  Burkholderia mallei NCTC 10247  Bacteria  normal  n/a   
 
 
-
 
NC_009952  Dshi_2219  putative cold-shock DNA-binding domain protein  50 
 
 
68 aa  68.2  0.00000000003  Dinoroseobacter shibae DFL 12  Bacteria  normal  normal 
 
 
-
 
NC_007510  Bcep18194_A3591  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia sp. 383  Bacteria  normal  normal  0.724551 
 
 
-
 
NC_010551  BamMC406_0434  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia ambifaria MC40-6  Bacteria  normal  0.157399  normal  0.399503 
 
 
-
 
NC_010084  Bmul_2894  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.0694911  normal  0.905374 
 
 
-
 
NC_010508  Bcenmc03_0476  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia cenocepacia MC0-3  Bacteria  normal  normal  0.528893 
 
 
-
 
NC_008060  Bcen_2602  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia cenocepacia AU 1054  Bacteria  normal  0.0673828  n/a   
 
 
-
 
NC_008390  Bamb_0408  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia ambifaria AMMD  Bacteria  normal  0.125835  n/a   
 
 
-
 
NC_008542  Bcen2424_0503  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  68.6  0.00000000003  Burkholderia cenocepacia HI2424  Bacteria  normal  n/a   
 
 
-
 
NC_008687  Pden_3653  cold-shock DNA-binding domain-containing protein  51.72 
 
 
80 aa  68.2  0.00000000003  Paracoccus denitrificans PD1222  Bacteria  normal  0.820165  normal  0.8886 
 
 
-
 
CP001509  ECD_01793  stress protein, member of the CspA-family  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli BL21(DE3)  Bacteria  hitchhiker  0.000145825  n/a   
 
 
-
 
CP001637  EcDH1_1820  cold-shock DNA-binding domain protein  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli DH1  Bacteria  decreased coverage  0.00000000000376643  n/a   
 
 
-
 
NC_011083  SeHA_C2038  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Salmonella enterica subsp. enterica serovar Heidelberg str. SL476  Bacteria  unclonable  0.0000133144  normal 
 
 
-
 
NC_010678  Rpic_3782  cold-shock DNA-binding domain protein  49.23 
 
 
67 aa  68.2  0.00000000004  Ralstonia pickettii 12J  Bacteria  normal  0.0399631  normal  0.208523 
 
 
-
 
NC_011094  SeSA_A1981  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633  Bacteria  hitchhiker  0.0000173649  normal 
 
 
-
 
NC_009801  EcE24377A_2051  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli E24377A  Bacteria  hitchhiker  0.000000000465967  n/a   
 
 
-
 
NC_013421  Pecwa_2213  cold shock-like protein CspC  47.69 
 
 
69 aa  68.2  0.00000000004  Pectobacterium wasabiae WPP163  Bacteria  hitchhiker  0.00000972653  n/a   
 
 
-
 
NC_011080  SNSL254_A1977  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  unclonable  0.00000786929  normal  0.190727 
 
 
-
 
NC_009436  Ent638_2393  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Enterobacter sp. 638  Bacteria  decreased coverage  0.000000101532  normal 
 
 
-
 
NC_011353  ECH74115_2554  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli O157:H7 str. EC4115  Bacteria  decreased coverage  0.00000000810099  normal 
 
 
-
 
NC_012880  Dd703_1083  cold-shock DNA-binding domain protein  49.23 
 
 
69 aa  68.2  0.00000000004  Dickeya dadantii Ech703  Bacteria  normal  n/a   
 
 
-
 
NC_012880  Dd703_2027  cold shock-like protein CspC  47.69 
 
 
69 aa  68.2  0.00000000004  Dickeya dadantii Ech703  Bacteria  normal  0.149984  n/a   
 
 
-
 
NC_009718  Fnod_0028  cold-shock DNA-binding domain-containing protein  53.85 
 
 
66 aa  67.8  0.00000000004  Fervidobacterium nodosum Rt17-B1  Bacteria  unclonable  0.00000000000670362  n/a   
 
 
-
 
NC_010498  EcSMS35_1365  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli SMS-3-5  Bacteria  hitchhiker  0.000234098  normal  0.0150165 
 
 
-
 
NC_012857  Rpic12D_3895  cold-shock DNA-binding domain protein  49.23 
 
 
67 aa  68.2  0.00000000004  Ralstonia pickettii 12D  Bacteria  normal  normal 
 
 
-
 
NC_014151  Cfla_0013  cold-shock DNA-binding domain protein  46.27 
 
 
67 aa  68.2  0.00000000004  Cellulomonas flavigena DSM 20109  Bacteria  normal  normal 
 
 
-
 
NC_009800  EcHS_A1913  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli HS  Bacteria  hitchhiker  0.00000000000658  n/a   
 
 
-
 
NC_012917  PC1_1920  cold shock-like protein CspC  47.69 
 
 
69 aa  68.2  0.00000000004  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.0000217103  n/a   
 
 
-
 
NC_011149  SeAg_B1294  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  decreased coverage  0.000000000000632959  n/a   
 
 
-
 
NC_011205  SeD_A1478  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  hitchhiker  0.000112944  normal  0.636634 
 
 
-
 
NC_012892  B21_01781  hypothetical protein  49.23 
 
 
69 aa  68.2  0.00000000004  Escherichia coli BL21  Bacteria  hitchhiker  0.000220518  n/a   
 
 
-
 
NC_010658  SbBS512_E2089  cold shock-like protein CspC  49.23 
 
 
69 aa  68.2  0.00000000004  Shigella boydii CDC 3083-94  Bacteria  unclonable  2.57783e-17  n/a   
 
 
-
 
NC_013093  Amir_6800  cold-shock DNA-binding domain protein  52.24 
 
 
67 aa  68.2  0.00000000004  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013172  Bfae_07120  cold-shock DNA-binding protein family  47.76 
 
 
67 aa  68.2  0.00000000004  Brachybacterium faecium DSM 4810  Bacteria  normal  0.976007  n/a   
 
 
-
 
NC_007952  Bxe_B2951  cold-shock DNA-binding protein family protein  47.69 
 
 
77 aa  67.8  0.00000000005  Burkholderia xenovorans LB400  Bacteria  normal  0.15288  normal 
 
 
-
 
NC_008541  Arth_1055  cold-shock DNA-binding protein family protein  46.27 
 
 
67 aa  67.8  0.00000000005  Arthrobacter sp. FB24  Bacteria  normal  0.481948  n/a   
 
 
-
 
NC_009483  Gura_4020  cold-shock DNA-binding domain-containing protein  53.12 
 
 
66 aa  67.8  0.00000000005  Geobacter uraniireducens Rf4  Bacteria  unclonable  0.0000000000184454  n/a   
 
 
-
 
NC_009636  Smed_2874  cold-shock DNA-binding domain-containing protein  55.22 
 
 
68 aa  67.8  0.00000000005  Sinorhizobium medicae WSM419  Bacteria  normal  normal 
 
 
-
 
NC_010086  Bmul_4166  cold-shock DNA-binding domain-containing protein  49.25 
 
 
67 aa  67.4  0.00000000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  0.745487  normal 
 
 
-
 
NC_009436  Ent638_1159  cold shock protein CspE  47.69 
 
 
69 aa  67.4  0.00000000006  Enterobacter sp. 638  Bacteria  normal  normal  0.752683 
 
 
-
 
NC_012848  Rleg_5163  cold-shock DNA-binding domain protein  60 
 
 
67 aa  67.4  0.00000000006  Rhizobium leguminosarum bv. trifolii WSM1325  Bacteria  normal  0.160929  normal  0.551155 
 
 
-
 
NC_013421  Pecwa_3159  cold shock protein CspE  47.69 
 
 
69 aa  67.4  0.00000000006  Pectobacterium wasabiae WPP163  Bacteria  unclonable  0.00000139034  n/a   
 
 
-
 
NC_007404  Tbd_0679  cold-shock DNA-binding protein family protein  46.27 
 
 
68 aa  67.4  0.00000000006  Thiobacillus denitrificans ATCC 25259  Bacteria  normal  0.233328  normal  0.774201 
 
 
-
 
NC_007511  Bcep18194_B1151  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  67.4  0.00000000006  Burkholderia sp. 383  Bacteria  normal  0.0114699  normal  0.306384 
 
 
-
 
NC_011205  SeD_A0730  cold shock protein CspE  47.69 
 
 
69 aa  67.4  0.00000000006  Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853  Bacteria  normal  normal 
 
 
-
 
NC_007802  Jann_3625  cold-shock DNA-binding protein family protein  47.06 
 
 
68 aa  67.4  0.00000000006  Jannaschia sp. CCS1  Bacteria  normal  0.164813  normal  0.0835288 
 
 
-
 
NC_007952  Bxe_B2780  cold-shock DNA-binding protein family protein  47.76 
 
 
67 aa  67.4  0.00000000006  Burkholderia xenovorans LB400  Bacteria  hitchhiker  0.00000626517  normal 
 
 
-
 
NC_007963  Csal_0751  cold-shock DNA-binding protein family protein  46.97 
 
 
67 aa  67.4  0.00000000006  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_012917  PC1_1172  cold shock protein CspE  47.69 
 
 
69 aa  67.4  0.00000000006  Pectobacterium carotovorum subsp. carotovorum PC1  Bacteria  unclonable  0.0000586616  n/a   
 
 
-
 
NC_013530  Xcel_0103  cold-shock DNA-binding domain protein  44.78 
 
 
67 aa  67.4  0.00000000006  Xylanimonas cellulosilytica DSM 15894  Bacteria  normal  n/a   
 
 
-
 
NC_010552  BamMC406_4522  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  67.4  0.00000000006  Burkholderia ambifaria MC40-6  Bacteria  normal  0.044588  normal  0.193224 
 
 
-
 
NC_008391  Bamb_4064  cold-shock DNA-binding domain-containing protein  47.76 
 
 
67 aa  67.4  0.00000000006  Burkholderia ambifaria AMMD  Bacteria  normal  0.325578  normal  0.535982 
 
 
-
 
NC_011149  SeAg_B0670  cold shock protein CspE  47.69 
 
 
69 aa  67.4  0.00000000006  Salmonella enterica subsp. enterica serovar Agona str. SL483  Bacteria  hitchhiker  0.00211319  n/a   
 
 
-
 
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