Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | EcSMS35_1365 |
Symbol | cspC |
ID | 6142832 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Escherichia coli SMS-3-5 |
Kingdom | Bacteria |
Replicon accession | NC_010498 |
Strand | + |
Start bp | 1352658 |
End bp | 1352867 |
Gene Length | 210 bp |
Protein Length | 69 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 641616243 |
Product | cold shock-like protein CspC |
Protein accession | YP_001743423 |
Protein GI | 170682897 |
COG category | [K] Transcription |
COG ID | [COG1278] Cold shock proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.000234098 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 0.0150165 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAAAGA TTAAAGGTCA GGTTAAGTGG TTCAACGAGT CTAAAGGTTT TGGCTTCATT ACTCCGGCTG ATGGCAGCAA AGACGTGTTC GTACACTTCT CCGCTATCCA GGGTAATGGC TTCAAAACTC TGGCTGAAGG TCAGAACGTT GAGTTCGAAA TTCAGGACGG CCAGAAAGGT CCGGCAGCTG TTAACGTAAC AGCTATCTGA
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Protein sequence | MAKIKGQVKW FNESKGFGFI TPADGSKDVF VHFSAIQGNG FKTLAEGQNV EFEIQDGQKG PAAVNVTAI
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